Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003181

Physical Location & Seq

Genomic Coordinates Forward (+)

14923547 .. 14924229

Gene Structure 683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g11840.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCGGCAGCGGTATCATCACCGTCGTCATCACCAGTACGGTGGTGGAGGACGGCGTTTCTAACAGTGAGGGACGAAACCCTAACAACTCCTCTACGCACTCCGATCCCCGAACTCCTCCATCATTCCATCTTCTCCCATTCCCATACTCTCCTCTTCGCCGCGCCCGACCTCCCTCCTCAGGAAGTCACCTCCGATTTGCTCTTCGTCATGGAGCTCGTCACCGCGAAGCCTCACGGCGGAGAAGACCTTACTCCGACCTTCACTCACATAACTCACTTGCTTCGTGGACTCTCCTCATCGACTTCTTCAACAAAATGCTGCGCTATTTCATCGGCTCTTCGTCGTTCACGCCGGTTATGGAACTCTACAGACTCTAGGGCGTGTTATGAGCACGTATCAGAGGAAATGCTCGATGGCGGAGGAGGTTCTGCTGGTGAAGTTCCTGCTGCGAATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4042

Protein Analysis

154

Amino Acids

16.62

Weight (kDa)

6.28

Isoelectric Point (pI)

70.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38120 AT4G38120 AT4G38120 AT4G38120
fragaria_vesca	FvH4_5g10170 FvH4_5g10170 FvH4_5g10170
malus_domestica	MD06G1127500.v1.1 MD14G1142800.v1.1 MD14G1142900.v1.1 MD14G1143100.v1.1
prunus_persica	Prupe.5G137300_v2.0.a1 Prupe.5G137300_v2.0.a1
pyrus_communis	pycom06g11740 pycom06g11750 pycom06g11760 pycom14g11840 pycom14g11850 pycom14g11860
rosa_chinensis	RchiOBHm_Chr7g0188101 RchiOBHm_Chr7g0188111 RchiOBHm_Chr7g0188121 RchiOBHm_Chr7g0188131
rosa_laevigata	RLG00000004701 RLG00000004726
rosa_multiflora	Rmu_co8421553.1_g000001 Rmu_ssc0000422.1_g000024
rosa_roxburghii	Rroxscaffold_3G00266750
rosa_rugosa	Rorug06G0488300
rosa_samantha	Rh7AG092500 Rh7AG092600 Rh7BG094200 Rh7CG093700 Rh7CG093900 Rh7DG094500 Rh7DG094600
rosa_wichuraiana	Rw7G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	164, 227
AciI	CCGC	6 cut(s)	5, 11, 162, 225, 240, 420
AclWI	GGATC	1 cut(s)	100
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	181, 239
AgsI	TTSAA	1 cut(s)	312
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw21I	GWGCWC	2 cut(s)	219, 396
AlwI	GGATC	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	8, 321, 449
AspLEI	GCGC	2 cut(s)	166, 326
AsuHPI	GGTGA	5 cut(s)	12, 24, 181, 214, 449
AxyI	CCTNAGG	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	219, 396
BbvI	GCAGC	3 cut(s)	20, 308, 436
BccI	CCATC	3 cut(s)	129, 137, 410
BceAI	ACGGC	2 cut(s)	69, 253
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	5 cut(s)	6, 9, 162, 322, 450
BlsI	GCNGC	5 cut(s)	7, 10, 163, 323, 451
BpiI	GAAGAC	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 239
Bse118I	RCCGGY	1 cut(s)	354
Bse1I	ACTGG	1 cut(s)	35
Bse21I	CCTNAGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	181, 239
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	6 cut(s)	81, 107, 143, 168, 286, 438
BseXI	GCAGC	3 cut(s)	20, 308, 436
Bsh1236I	CGCG	2 cut(s)	164, 227
BsiHKAI	GWGCWC	2 cut(s)	219, 396
BsiSI	CCGG	1 cut(s)	355
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	181, 239
BsmFI	GGGAC	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	219, 396
Bsp143I	GATC	1 cut(s)	105
BspACI	CCGC	6 cut(s)	5, 11, 162, 225, 240, 420
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	2 cut(s)	164, 227
BspPI	GGATC	1 cut(s)	100
BspQI	GCTCTTC	2 cut(s)	209, 345
BsrFI	RCCGGY	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	354
BssMI	GATC	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	24, 42, 67
Bst6I	CTCTTC	3 cut(s)	161, 209, 345
BstBAI	YACGTR	1 cut(s)	397
BstDEI	CTNAG	1 cut(s)	180
BstFNI	CGCG	2 cut(s)	164, 227
BstHHI	GCGC	2 cut(s)	166, 326
BstKTI	GATC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	105
BstSFI	CTRYAG	1 cut(s)	369
BstUI	CGCG	2 cut(s)	164, 227
BstV1I	GCAGC	3 cut(s)	20, 308, 436
BstV2I	GAAGAC	1 cut(s)	252
BstXI	CCANNNNNNTGG	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	72
CfoI	GCGC	2 cut(s)	166, 326
Cfr10I	RCCGGY	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	3 cut(s)	217, 232, 338
CviKI_1	RGCY	3 cut(s)	217, 232, 338
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
Eam1104I	CTCTTC	3 cut(s)	161, 209, 345
EarI	CTCTTC	3 cut(s)	161, 209, 345
EciI	GGCGGA	2 cut(s)	255, 435
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	217
Eco81I	CCTNAGG	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	1 cut(s)	214
FaiI	YATR	5 cut(s)	147, 212, 272, 361, 390
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	5 cut(s)	6, 9, 162, 322, 450
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	5 cut(s)	6, 9, 162, 322, 450
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	2 cut(s)	165, 325
GluI	GCNGC	5 cut(s)	6, 9, 162, 322, 450
HapII	CCGG	1 cut(s)	355
HhaI	GCGC	2 cut(s)	166, 326
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	2 cut(s)	164, 324
HinP1I	GCGC	2 cut(s)	164, 324
HinfI	GANTC	3 cut(s)	291, 374, 454
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	5 cut(s)	12, 24, 181, 214, 449
Hpy166II	GTNNAC	2 cut(s)	290, 350
Hpy188I	TCNGA	4 cut(s)	105, 196, 258, 403
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	2 cut(s)	290, 350
Hpy99I	CGWCG	2 cut(s)	28, 348
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	3 cut(s)	24, 42, 67
HpyCH4IV	ACGT	1 cut(s)	396
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	2 cut(s)	164, 324
Kzo9I	GATC	1 cut(s)	105
LguI	GCTCTTC	2 cut(s)	209, 345
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	4 cut(s)	48, 167, 368, 420
Lsp1109I	GCAGC	3 cut(s)	20, 308, 436
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	187, 220
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	6 cut(s)	124, 148, 196, 257, 300, 332
MhlI	GDGCHC	2 cut(s)	219, 396
MlyI	GAGTC	2 cut(s)	285, 368
MmeI	TCCRAC	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	355
MvnI	CGCG	2 cut(s)	164, 227
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	187, 220
PciSI	GCTCTTC	2 cut(s)	209, 345
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	5 cut(s)	7, 10, 163, 323, 451
PleI	GAGTC	2 cut(s)	285, 368
PpsI	GAGTC	2 cut(s)	285, 368
Ppu21I	YACGTR	1 cut(s)	397
Psp124BI	GAGCTC	1 cut(s)	219
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	219
SapI	GCTCTTC	2 cut(s)	209, 345
SatI	GCNGC	5 cut(s)	6, 9, 162, 322, 450
Sau3AI	GATC	1 cut(s)	105
SchI	GAGTC	2 cut(s)	285, 368
SduI	GDGCHC	2 cut(s)	219, 396
SetI	ASST	7 cut(s)	174, 194, 219, 252, 263, 399, 430
SfcI	CTRYAG	1 cut(s)	369
SsiI	CCGC	6 cut(s)	5, 11, 162, 225, 240, 420
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	24, 42, 67
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	2 cut(s)	302, 414
TauI	GCSGC	2 cut(s)	8, 164
TfiI	GAWTC	1 cut(s)	454
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	2 cut(s)	187, 220
TseI	GCWGC	3 cut(s)	8, 321, 449
Tsp45I	GTSAC	2 cut(s)	187, 220
TspDTI	ATGAA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	72
XcmI	CCANNNNNNNNNTGG	1 cut(s)	42
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.