Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003181

Physical Location & Seq

Genomic Coordinates Forward (+)

23561391 .. 23562381

Gene Structure 991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1142800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCGGCAGCGGCATCATCACCGTCGTCATCGCCAGTACGGTGGTGGAGGACGGCGTTTCTAACAGTGAGGGACAAAACCCTAACAACTCCTTTACGCACTCCAATCCCCGAACTCCTCCATCATTCCATCTTCTCCCATTCCCATACTCTCCTCTCCGCCGCCCCCGACCTCCCTCCTCAGGAAGTCACCTCCCATTTGCTCTTCGTCATGGAGCTCGTCACCGCGAAGCCTCACAGCGGAGAAGACCTTACTCCGACCTTCACTCACATAACTCACTTGATCCATGACATCTCCCATCGCATTCCTCTCGTAATCAATTCAGCTTCGTGGACTCTCCTCCTCGACTTCGTCAACAAAATGCTTCGCTATTTCATCGGCTCTTCGTCGTTCACGCAGGTTATGGAAGCTCTACAGACTCTAAGGCGTGTTATGAGCACGTATCAGAGGAAACGCTCGATGGCGGAGGAGGTTCTGCTGGTGAAGTTCCTGCTGCGAATCATTGAGAGCTCTCACGCAGAGTTGAGCTGCTTTTCAAACTCGATTCTCAACCAAAGCTCGGTTCTTGAAGTTGGGAAGAGAATGCCGGTCCCTCGATATGGAAGCTTATGGGAAATTCAGACACTTGCGTTTACTATGGTTGGAGAGGCAATCTCCCGAGTTGGCTCATACTTTCCATTGGACATCTGGAGATCAACGATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4042

Protein Analysis

236

Amino Acids

26.6

Weight (kDa)

8.82

Isoelectric Point (pI)

60.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38120 AT4G38120 AT4G38120 AT4G38120
fragaria_vesca	FvH4_5g10170 FvH4_5g10170 FvH4_5g10170
malus_domestica	MD06G1127500.v1.1 MD14G1142800.v1.1 MD14G1142900.v1.1 MD14G1143100.v1.1
prunus_persica	Prupe.5G137300_v2.0.a1 Prupe.5G137300_v2.0.a1
pyrus_communis	pycom06g11740 pycom06g11750 pycom06g11760 pycom14g11840 pycom14g11850 pycom14g11860
rosa_chinensis	RchiOBHm_Chr7g0188101 RchiOBHm_Chr7g0188111 RchiOBHm_Chr7g0188121 RchiOBHm_Chr7g0188131
rosa_laevigata	RLG00000004701 RLG00000004726
rosa_multiflora	Rmu_co8421553.1_g000001 Rmu_ssc0000422.1_g000024
rosa_roxburghii	Rroxscaffold_3G00266750
rosa_rugosa	Rorug06G0488300
rosa_samantha	Rh7AG092500 Rh7AG092600 Rh7BG094200 Rh7CG093700 Rh7CG093900 Rh7DG094500 Rh7DG094600
rosa_wichuraiana	Rw7G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AccII	CGCG	1 cut(s)	227
AciI	CCGC	7 cut(s)	5, 11, 159, 162, 225, 240, 464
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	615
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	4 cut(s)	181, 239, 559, 599
AgsI	TTSAA	2 cut(s)	537, 569
AjuI	GAANNNNNNNTTGG	2 cut(s)	546, 578
AluBI	AGCT	7 cut(s)	217, 326, 410, 510, 528, 558, 606
AluI	AGCT	7 cut(s)	217, 326, 410, 510, 528, 558, 606
Alw21I	GWGCWC	3 cut(s)	219, 440, 512
AlwI	GGATC	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	657
ApeKI	GCWGC	3 cut(s)	8, 493, 528
ApoI	RAATTY	1 cut(s)	615
AspS9I	GGNCC	1 cut(s)	589
AsuHPI	GGTGA	4 cut(s)	12, 181, 214, 493
AvaI	CYCGRG	1 cut(s)	657
AvaII	GGWCC	1 cut(s)	589
AxyI	CCTNAGG	1 cut(s)	180
BanII	GRGCYC	2 cut(s)	219, 512
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	3 cut(s)	219, 440, 512
BbvI	GCAGC	3 cut(s)	20, 480, 515
BccI	CCATC	4 cut(s)	129, 137, 306, 454
BceAI	ACGGC	1 cut(s)	69
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BfmI	CTRYAG	1 cut(s)	413
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	6 cut(s)	6, 9, 12, 162, 494, 529
BlsI	GCNGC	6 cut(s)	7, 10, 13, 163, 495, 530
Bme18I	GGWCC	1 cut(s)	589
BmeT110I	CYCGRG	1 cut(s)	657
BmgT120I	GGNCC	1 cut(s)	589
BmiI	GGNNCC	1 cut(s)	591
BmsI	GCATC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	252
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
BsaAI	YACGTR	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 239, 559, 599
Bse118I	RCCGGY	1 cut(s)	586
Bse1I	ACTGG	1 cut(s)	35
Bse21I	CCTNAGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	4 cut(s)	181, 239, 559, 599
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	6 cut(s)	107, 143, 168, 329, 332, 482
BseXI	GCAGC	3 cut(s)	20, 480, 515
Bsh1236I	CGCG	1 cut(s)	227
BsiHKAI	GWGCWC	3 cut(s)	219, 440, 512
BsiHKCI	CYCGRG	1 cut(s)	657
BsiSI	CCGG	1 cut(s)	587
BslFI	GGGAC	2 cut(s)	86, 575
BslI	CCNNNNNNNGG	4 cut(s)	181, 239, 559, 599
BsmFI	GGGAC	2 cut(s)	86, 575
BsmI	GAATGC	2 cut(s)	303, 588
BsoBI	CYCGRG	1 cut(s)	657
Bsp1286I	GDGCHC	3 cut(s)	219, 440, 512
Bsp143I	GATC	2 cut(s)	282, 692
BspACI	CCGC	7 cut(s)	5, 11, 159, 162, 225, 240, 464
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	591
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	277
BspQI	GCTCTTC	2 cut(s)	209, 388
BsrFI	RCCGGY	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	586
BssMI	GATC	2 cut(s)	282, 692
Bst4CI	ACNGT	3 cut(s)	24, 42, 67
Bst6I	CTCTTC	3 cut(s)	209, 388, 572
BstBAI	YACGTR	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	180, 422
BstFNI	CGCG	1 cut(s)	227
BstKTI	GATC	2 cut(s)	285, 695
BstMBI	GATC	2 cut(s)	282, 692
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	413
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	20, 480, 515
BstV2I	GAAGAC	1 cut(s)	252
BstXI	CCANNNNNNTGG	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	180
BtgZI	GCGATG	2 cut(s)	15, 284
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	586
Cfr13I	GGNCC	1 cut(s)	589
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	2 cut(s)	211, 287
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	2 cut(s)	180, 422
DpnI	GATC	2 cut(s)	284, 694
DpnII	GATC	2 cut(s)	282, 692
Eam1104I	CTCTTC	3 cut(s)	209, 388, 572
EarI	CTCTTC	3 cut(s)	209, 388, 572
EciI	GGCGGA	2 cut(s)	148, 479
Ecl136II	GAGCTC	2 cut(s)	217, 510
Eco24I	GRGCYC	2 cut(s)	219, 512
Eco47I	GGWCC	1 cut(s)	589
Eco53kI	GAGCTC	2 cut(s)	217, 510
Eco81I	CCTNAGG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	657
EcoICRI	GAGCTC	2 cut(s)	217, 510
EcoT38I	GRGCYC	2 cut(s)	219, 512
FaeI	CATG	2 cut(s)	214, 290
FaqI	GGGAC	2 cut(s)	86, 575
FatI	CATG	2 cut(s)	210, 286
Fnu4HI	GCNGC	6 cut(s)	6, 9, 12, 162, 494, 529
FriOI	GRGCYC	2 cut(s)	219, 512
Fsp4HI	GCNGC	6 cut(s)	6, 9, 12, 162, 494, 529
GluI	GCNGC	6 cut(s)	6, 9, 12, 162, 494, 529
HapII	CCGG	1 cut(s)	587
Hin1II	CATG	2 cut(s)	214, 290
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	604
HinfI	GANTC	4 cut(s)	334, 418, 498, 544
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	4 cut(s)	12, 181, 214, 493
Hpy166II	GTNNAC	4 cut(s)	333, 355, 393, 633
Hpy188I	TCNGA	3 cut(s)	258, 447, 621
Hpy188III	TCNNGA	4 cut(s)	182, 566, 657, 688
Hpy8I	GTNNAC	4 cut(s)	333, 355, 393, 633
Hpy99I	CGWCG	2 cut(s)	28, 391
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	3 cut(s)	24, 42, 67
HpyCH4IV	ACGT	1 cut(s)	440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	180, 422
HpySE526I	ACGT	1 cut(s)	440
Hsp92II	CATG	2 cut(s)	214, 290
Kzo9I	GATC	2 cut(s)	282, 692
LguI	GCTCTTC	2 cut(s)	209, 388
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	7 cut(s)	48, 167, 383, 464, 503, 600, 673
Lsp1109I	GCAGC	3 cut(s)	20, 480, 515
LweI	GCATC	1 cut(s)	23
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	187, 220
MalI	GATC	2 cut(s)	284, 694
MboI	GATC	2 cut(s)	282, 692
MboII	GAAGA	5 cut(s)	124, 196, 257, 375, 589
MhlI	GDGCHC	3 cut(s)	219, 440, 512
MluCI	AATT	2 cut(s)	319, 615
MlyI	GAGTC	2 cut(s)	328, 412
MmeI	TCCRAC	2 cut(s)	281, 622
MspA1I	CMGCKG	2 cut(s)	11, 240
MspI	CCGG	1 cut(s)	587
Mva1269I	GAATGC	2 cut(s)	303, 588
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	282, 692
NlaIII	CATG	2 cut(s)	214, 290
NlaIV	GGNNCC	1 cut(s)	591
NmuCI	GTSAC	2 cut(s)	187, 220
PciSI	GCTCTTC	2 cut(s)	209, 388
PctI	GAATGC	2 cut(s)	303, 588
PfeI	GAWTC	2 cut(s)	498, 544
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	6 cut(s)	7, 10, 13, 163, 495, 530
PleI	GAGTC	2 cut(s)	328, 412
PpsI	GAGTC	2 cut(s)	328, 412
Ppu21I	YACGTR	1 cut(s)	441
Psp124BI	GAGCTC	2 cut(s)	219, 512
PspN4I	GGNNCC	1 cut(s)	591
PspPI	GGNCC	1 cut(s)	589
PsyI	GACNNNGTC	1 cut(s)	350
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SacI	GAGCTC	2 cut(s)	219, 512
SapI	GCTCTTC	2 cut(s)	209, 388
SatI	GCNGC	6 cut(s)	6, 9, 12, 162, 494, 529
Sau3AI	GATC	2 cut(s)	282, 692
Sau96I	GGNCC	1 cut(s)	589
SchI	GAGTC	2 cut(s)	328, 412
SduI	GDGCHC	3 cut(s)	219, 440, 512
SfaNI	GCATC	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	589
Sse9I	AATT	2 cut(s)	319, 615
SsiI	CCGC	7 cut(s)	5, 11, 159, 162, 225, 240, 464
SstI	GAGCTC	2 cut(s)	219, 512
TaaI	ACNGT	3 cut(s)	24, 42, 67
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	4 cut(s)	345, 458, 542, 595
TasI	AATT	2 cut(s)	319, 615
TauI	GCSGC	3 cut(s)	8, 14, 164
TfiI	GAWTC	2 cut(s)	498, 544
TscAI	CASTG	1 cut(s)	72
TseFI	GTSAC	2 cut(s)	187, 220
TseI	GCWGC	3 cut(s)	8, 493, 528
Tsp45I	GTSAC	2 cut(s)	187, 220
TspDTI	ATGAA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	72
Tth111I	GACNNNGTC	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	589
XapI	RAATTY	1 cut(s)	615
XcmI	CCANNNNNNNNNTGG	2 cut(s)	42, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.