Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003181

Physical Location & Seq

Genomic Coordinates Forward (+)

16953014 .. 16954125

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11750.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGATTCGCTCGTTCATCGGCTCTTCGTCCTTCACGCCGGTTATGGAAGCTCTACAGACTCTAAGACGTGTTATGAGCGCGTATCAGAGGAAATGCACGACGGGGGAGGAGGTTCAGCTGGTGAAGTTCCTGCTGCGCATCATTGAGAGCTCTCATGCAGAGTTGAGCTCAGTTTGCAACCAAAGCTCGGTTCTTGAAGCTGGGAAGAGAATGCCGGTGCCTCGATATTGTAGCTTATGGGAAGTTCAGACACTTGCATTTACCATGCTTGGAGAGGCAATCTCCAGAGTTGGTTTAACCTTGCCATTGGACATCTGGGGATCAACAATCGAGGTTTTTAGGAAAGTGATGGATGGCTTGGCAACTAAAAGCCAGCTTGTGGAAGACGCTTTTATGTCCAGGTTTTATTTATCTCTTCTGCATTGTCTGCATTTGACTCTCGCGGATCGTAAGTGTTCGCTTTCTGACCATGTGTCAAGTTTTGTGGCTGCTTTGCGAATGTTCTTTTCCTATGGCATTAATAGTAGAACCCAACATACCTGTTCAGCAATTGGTCAAAAGGAAAAAGAACTTACTTTAGCAAGCCTTAAGTTGGGTTTGGAAGATTCTAAAAAGACGGATCGTACTCCATATAGGCCTCCACACCTGCGCCAAAGGGACAATTCAAATATGAAGAAGAGTGGAGCTCAAGGTTCTCAAAGTTTATCGGATCGATCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4042 HEAT

Protein Analysis

241

Amino Acids

26.95

Weight (kDa)

9.41

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38120 AT4G38120 AT4G38120 AT4G38120
fragaria_vesca	FvH4_5g10170 FvH4_5g10170 FvH4_5g10170
malus_domestica	MD06G1127500.v1.1 MD14G1142800.v1.1 MD14G1142900.v1.1 MD14G1143100.v1.1
prunus_persica	Prupe.5G137300_v2.0.a1 Prupe.5G137300_v2.0.a1
pyrus_communis	pycom06g11740 pycom06g11750 pycom06g11760 pycom14g11840 pycom14g11850 pycom14g11860
rosa_chinensis	RchiOBHm_Chr7g0188101 RchiOBHm_Chr7g0188111 RchiOBHm_Chr7g0188121 RchiOBHm_Chr7g0188131
rosa_laevigata	RLG00000004701 RLG00000004726
rosa_multiflora	Rmu_co8421553.1_g000001 Rmu_ssc0000422.1_g000024
rosa_roxburghii	Rroxscaffold_3G00266750
rosa_rugosa	Rorug06G0488300
rosa_samantha	Rh7AG092500 Rh7AG092600 Rh7BG094200 Rh7CG093700 Rh7CG093900 Rh7DG094500 Rh7DG094600
rosa_wichuraiana	Rw7G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	654
Acc16I	TGCGCA	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	654
AccB1I	GGYRCC	1 cut(s)	217
AccB7I	CCANNNNNTGG	1 cut(s)	379
AccII	CGCG	2 cut(s)	80, 443
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	4 cut(s)	328, 453, 627, 717
AfaI	GTAC	1 cut(s)	625
AfiI	CCNNNNNNNGG	3 cut(s)	187, 379, 592
AflII	CTTAAG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	197, 666
AhdI	GACNNNNNGTC	1 cut(s)	472
AjiI	CACGTC	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	398
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	9 cut(s)	50, 118, 150, 168, 186, 200, 234, 376, 686
AluI	AGCT	9 cut(s)	50, 118, 150, 168, 186, 200, 234, 376, 686
Alw21I	GWGCWC	3 cut(s)	152, 170, 688
AlwI	GGATC	4 cut(s)	328, 453, 627, 717
AoxI	GGCC	1 cut(s)	635
ApeKI	GCWGC	2 cut(s)	133, 488
AseI	ATTAAT	1 cut(s)	519
AspLEI	GCGC	3 cut(s)	80, 138, 651
AsuHPI	GGTGA	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	217
BanII	GRGCYC	3 cut(s)	152, 170, 688
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	3 cut(s)	152, 170, 688
BbvI	GCAGC	2 cut(s)	120, 475
BccI	CCATC	2 cut(s)	343, 347
BciT130I	CCWGG	1 cut(s)	400
BfmI	CTRYAG	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	587
BfuAI	ACCTGC	1 cut(s)	654
BisI	GCNGC	2 cut(s)	134, 489
BlsI	GCNGC	2 cut(s)	135, 490
Bme1390I	CCNGG	1 cut(s)	400
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmgBI	CACGTC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	390
BplI	GAGNNNNNCTC	6 cut(s)	152, 184, 266, 298, 670, 702
BpmI	CTGGAG	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	672
Bsa29I	ATCGAT	1 cut(s)	712
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 379, 592
Bse118I	RCCGGY	2 cut(s)	37, 214
BseBI	CCWGG	1 cut(s)	400
BseCI	ATCGAT	1 cut(s)	712
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	3 cut(s)	187, 379, 592
BseMII	CTCAG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	120, 475
BseYI	CCCAGC	1 cut(s)	200
Bsh1236I	CGCG	2 cut(s)	80, 443
BshFI	GGCC	1 cut(s)	637
BshNI	GGYRCC	1 cut(s)	217
BshVI	ATCGAT	1 cut(s)	712
BsiHKAI	GWGCWC	3 cut(s)	152, 170, 688
BsiSI	CCGG	2 cut(s)	38, 215
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	3 cut(s)	187, 379, 592
BsmFI	GGGAC	1 cut(s)	671
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	637
Bsp1286I	GDGCHC	3 cut(s)	152, 170, 688
Bsp143I	GATC	5 cut(s)	320, 445, 619, 709, 713
BspACI	CCGC	1 cut(s)	443
BspANI	GGCC	1 cut(s)	637
BspCNI	CTCAG	1 cut(s)	182
BspDI	ATCGAT	1 cut(s)	712
BspFNI	CGCG	2 cut(s)	80, 443
BspLI	GGNNCC	1 cut(s)	219
BspMI	ACCTGC	1 cut(s)	654
BspPI	GGATC	4 cut(s)	328, 453, 627, 717
BspQI	GCTCTTC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	217
BspTI	CTTAAG	1 cut(s)	587
BsrFI	RCCGGY	2 cut(s)	37, 214
BssAI	RCCGGY	2 cut(s)	37, 214
BssMI	GATC	5 cut(s)	320, 445, 619, 709, 713
Bst2UI	CCWGG	1 cut(s)	400
Bst6I	CTCTTC	4 cut(s)	28, 200, 420, 671
BstAFI	CTTAAG	1 cut(s)	587
BstAPI	GCANNNNNTGC	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	374, 583
BstDEI	CTNAG	3 cut(s)	62, 169, 717
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	2 cut(s)	80, 443
BstHHI	GCGC	3 cut(s)	80, 138, 651
BstKTI	GATC	5 cut(s)	323, 448, 622, 712, 716
BstMBI	GATC	5 cut(s)	320, 445, 619, 709, 713
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 183, 427
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	53
BstUI	CGCG	2 cut(s)	80, 443
BstV1I	GCAGC	2 cut(s)	120, 475
BstV2I	GAAGAC	1 cut(s)	390
Bsu15I	ATCGAT	1 cut(s)	712
BsuRI	GGCC	1 cut(s)	637
BsuTUI	ATCGAT	1 cut(s)	712
BtrI	CACGTC	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	358
BveI	ACCTGC	1 cut(s)	654
Cac8I	GCNNGC	2 cut(s)	374, 583
CfoI	GCGC	3 cut(s)	80, 138, 651
Cfr10I	RCCGGY	2 cut(s)	37, 214
ClaI	ATCGAT	1 cut(s)	712
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	1 cut(s)	624
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	3 cut(s)	155, 265, 470
CviQI	GTAC	1 cut(s)	624
DdeI	CTNAG	3 cut(s)	62, 169, 717
DpnI	GATC	5 cut(s)	322, 447, 621, 711, 715
DpnII	GATC	5 cut(s)	320, 445, 619, 709, 713
DriI	GACNNNNNGTC	1 cut(s)	472
Eam1104I	CTCTTC	4 cut(s)	28, 200, 420, 671
Eam1105I	GACNNNNNGTC	1 cut(s)	472
EarI	CTCTTC	4 cut(s)	28, 200, 420, 671
Ecl136II	GAGCTC	3 cut(s)	150, 168, 686
Eco147I	AGGCCT	1 cut(s)	637
Eco24I	GRGCYC	3 cut(s)	152, 170, 688
Eco53kI	GAGCTC	3 cut(s)	150, 168, 686
EcoICRI	GAGCTC	3 cut(s)	150, 168, 686
EcoRII	CCWGG	1 cut(s)	398
EcoT38I	GRGCYC	3 cut(s)	152, 170, 688
FaeI	CATG	3 cut(s)	158, 268, 473
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	3 cut(s)	154, 264, 469
Fnu4HI	GCNGC	2 cut(s)	134, 489
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	3 cut(s)	152, 170, 688
Fsp4HI	GCNGC	2 cut(s)	134, 489
FspI	TGCGCA	1 cut(s)	137
GlaI	GCGC	3 cut(s)	79, 137, 650
GluI	GCNGC	2 cut(s)	134, 489
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	637
HapII	CCGG	2 cut(s)	38, 215
HgaI	GACGC	1 cut(s)	395
HhaI	GCGC	3 cut(s)	80, 138, 651
Hin1II	CATG	3 cut(s)	158, 268, 473
Hin6I	GCGC	3 cut(s)	78, 136, 649
HinP1I	GCGC	3 cut(s)	78, 136, 649
HinfI	GANTC	4 cut(s)	4, 58, 436, 605
HpaII	CCGG	2 cut(s)	38, 215
HphI	GGTGA	1 cut(s)	133
Hpy188I	TCNGA	4 cut(s)	87, 249, 466, 709
Hpy188III	TCNNGA	2 cut(s)	194, 285
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	6 cut(s)	96, 158, 177, 257, 421, 430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 183, 427
HpyF3I	CTNAG	3 cut(s)	62, 169, 717
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	3 cut(s)	158, 268, 473
HspAI	GCGC	3 cut(s)	78, 136, 649
Kzo9I	GATC	5 cut(s)	320, 445, 619, 709, 713
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	683
Lsp1109I	GCAGC	2 cut(s)	120, 475
LweI	GCATC	1 cut(s)	147
MaeII	ACGT	1 cut(s)	67
MalI	GATC	5 cut(s)	322, 447, 621, 711, 715
MboI	GATC	5 cut(s)	320, 445, 619, 709, 713
MboII	GAAGA	7 cut(s)	15, 217, 395, 407, 614, 685, 688
MfeI	CAATTG	1 cut(s)	549
MhlI	GDGCHC	3 cut(s)	152, 170, 688
MluCI	AATT	2 cut(s)	549, 661
MlyI	GAGTC	2 cut(s)	52, 430
MnlI	CCTC	7 cut(s)	81, 100, 103, 231, 268, 325, 648
MseI	TTAA	3 cut(s)	296, 519, 588
MspA1I	CMGCKG	1 cut(s)	118
MspCI	CTTAAG	1 cut(s)	587
MspI	CCGG	2 cut(s)	38, 215
MspR9I	CCNGG	1 cut(s)	400
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	400
MvnI	CGCG	2 cut(s)	80, 443
MwoI	GCNNNNNNNGC	3 cut(s)	174, 183, 427
NdeII	GATC	5 cut(s)	320, 445, 619, 709, 713
NlaIII	CATG	3 cut(s)	158, 268, 473
NlaIV	GGNNCC	1 cut(s)	219
NsbI	TGCGCA	1 cut(s)	137
PaqCI	CACCTGC	1 cut(s)	654
PceI	AGGCCT	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	28
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	4, 605
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	135, 490
PleI	GAGTC	2 cut(s)	52, 430
PpsI	GAGTC	2 cut(s)	52, 430
PshBI	ATTAAT	1 cut(s)	519
Psp124BI	GAGCTC	3 cut(s)	152, 170, 688
Psp6I	CCWGG	1 cut(s)	398
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	219
PsrI	GAACNNNNNNTAC	2 cut(s)	520, 552
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
SacI	GAGCTC	3 cut(s)	152, 170, 688
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	3 cut(s)	296, 519, 588
SatI	GCNGC	2 cut(s)	134, 489
Sau3AI	GATC	5 cut(s)	320, 445, 619, 709, 713
SchI	GAGTC	2 cut(s)	52, 430
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	3 cut(s)	152, 170, 688
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	587, 687
SmoI	CTYRAG	2 cut(s)	587, 687
Sse9I	AATT	2 cut(s)	549, 661
SseBI	AGGCCT	1 cut(s)	637
SsiI	CCGC	1 cut(s)	443
SstI	GAGCTC	3 cut(s)	152, 170, 688
StuI	AGGCCT	1 cut(s)	637
StyD4I	CCNGG	1 cut(s)	398
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	3 cut(s)	223, 330, 712
TasI	AATT	2 cut(s)	549, 661
TfiI	GAWTC	2 cut(s)	4, 605
Tru1I	TTAA	3 cut(s)	296, 519, 588
Tru9I	TTAA	3 cut(s)	296, 519, 588
TseI	GCWGC	2 cut(s)	133, 488
TspDTI	ATGAA	2 cut(s)	4, 686
TspGWI	ACGGA	1 cut(s)	632
Van91I	CCANNNNNTGG	1 cut(s)	379
Vha464I	CTTAAG	1 cut(s)	587
VspI	ATTAAT	1 cut(s)	519
XcmI	CCANNNNNNNNNTGG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.