Rh7AG092500

Domain of unknown function (DUF4042)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003181
Physical Location & Seq
Forward (+)
7054209 .. 7056870
2662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG092500.1

Sequence Viewer

Length: 693 bp
ATGATGCTTGATGGTTTCGGCAACATGCTTCAATTTTTCATTGCCTCTTCATCATTTACGCCCAGCATGGAATGCTTACAGACTCTGAGGCGTGCTATGAGCACCTACCAGAGGAAGTGTTCTCTGGCCGATGAGATTCAGCTGATCTTAAGTGTTCCCTCCCTGACCATGTTTTGTAGCTGCTTTGCAAATGTTCTTGTTAGTAGTAGAAGCCAGCTTACCAGGCCGGTAACTGGTCAAAAGGAGAGTGAACTGAGTGTAGCAAGCCTTAAGTCTGATGAGGAATCTTCCACACTTGACCTCGCCTCTCTGATTTATAGTGACAGTGATGGATCACTTAAAGACACTGAGAGCATTCAGAAATCGAAGGTCAGAGTAGCTGCCACTGTTTGTATACAGGATATCTGTCAAGCTGATTCGAAATCATTTAGTAGCCAATGGACACTGCTTTTGCCAACCAATGATGTATTACAACCTAGGAAGTTTGAAGCAACACTAATGACTTGTTTGCTGTTTGATCCCTATTTGAAGGCACGGGTTGCATCTGCCTCAACTCTGGAAGCAATGTTGGATGGGCCTTCTTCTGTTTTTCTGCTGGTAGCAGAGTTCAAAGAGTCTTCTAAAAGGGGATCTTTTACAGCACTTTCAAGTTCCCTTGGACATATACTAATGCAGCTTCATACAGGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4042

Protein Analysis

230

Amino Acids

25.18

Weight (kDa)

5.45

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4042 PF13251 123 - 229 1.7e-31 Domain of unknown function (DUF4042)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 394
AclWI GGATC 3 cut(s) 340, 512, 637
AcoI YGGCCR 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 111, 233
AflII CTTAAG 2 cut(s) 148, 269
AgsI TTSAA 5 cut(s) 32, 488, 529, 610, 648
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 6 cut(s) 142, 180, 217, 380, 413, 676
AluI AGCT 6 cut(s) 142, 180, 217, 380, 413, 676
Alw21I GWGCWC 1 cut(s) 104
AlwI GGATC 3 cut(s) 340, 512, 637
AlwNI CAGNNNCTG 1 cut(s) 85
AoxI GGCC 3 cut(s) 126, 224, 575
ApeKI GCWGC 3 cut(s) 180, 380, 673
ArsI GACNNNNNNTTYG 2 cut(s) 433, 465
AspA2I CCTAGG 1 cut(s) 476
AspS9I GGNCC 1 cut(s) 575
AsuII TTCGAA 1 cut(s) 419
AvrII CCTAGG 1 cut(s) 476
BarI GAAGNNNNNNTAC 2 cut(s) 202, 234
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 167, 367, 685
BccI CCATC 3 cut(s) 5, 323, 566
BciT130I CCWGG 1 cut(s) 223
BfaI CTAG 1 cut(s) 477
BfrI CTTAAG 2 cut(s) 148, 269
BisI GCNGC 3 cut(s) 181, 381, 674
BlnI CCTAGG 1 cut(s) 476
BlsI GCNGC 3 cut(s) 182, 382, 675
Bme1390I CCNGG 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 575
BmrFI CCNGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 551
BpiI GAAGAC 1 cut(s) 609
Bpu14I TTCGAA 1 cut(s) 419
BsaJI CCNNGG 2 cut(s) 476, 655
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 233
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 2 cut(s) 39, 570
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 476, 655
BseGI GGATG 1 cut(s) 577
BseLI CCNNNNNNNGG 2 cut(s) 111, 233
BseMI GCAATG 2 cut(s) 39, 570
BseMII CTCAG 3 cut(s) 77, 245, 339
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 3 cut(s) 167, 367, 685
BseYI CCCAGC 1 cut(s) 62
BshFI GGCC 3 cut(s) 128, 226, 577
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 111, 233
BsmI GAATGC 2 cut(s) 77, 354
BsnI GGCC 3 cut(s) 128, 226, 577
Bsp119I TTCGAA 1 cut(s) 419
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 4 cut(s) 144, 332, 517, 629
BspANI GGCC 3 cut(s) 128, 226, 577
BspCNI CTCAG 3 cut(s) 78, 246, 340
BspPI GGATC 3 cut(s) 340, 512, 637
BspT104I TTCGAA 1 cut(s) 419
BspTI CTTAAG 2 cut(s) 148, 269
BsrDI GCAATG 2 cut(s) 39, 570
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 476, 655
BssMI GATC 4 cut(s) 144, 332, 517, 629
BssNAI GTATAC 1 cut(s) 395
BssT1I CCWWGG 2 cut(s) 476, 655
Bst1107I GTATAC 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 223
Bst4CI ACNGT 2 cut(s) 326, 388
Bst6I CTCTTC 1 cut(s) 52
BstAFI CTTAAG 2 cut(s) 148, 269
BstAPI GCANNNNNTGC 2 cut(s) 72, 539
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 3 cut(s) 93, 215, 265
BstDEI CTNAG 3 cut(s) 86, 254, 348
BstENI CCTNNNNNAGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 577
BstKTI GATC 4 cut(s) 147, 335, 520, 632
BstMBI GATC 4 cut(s) 144, 332, 517, 629
BstMWI GCNNNNNNNGC 3 cut(s) 72, 223, 539
BstNI CCWGG 1 cut(s) 223
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 221
BstV1I GCAGC 3 cut(s) 167, 367, 685
BstV2I GAAGAC 1 cut(s) 609
BstX2I RGATCY 1 cut(s) 629
BstYI RGATCY 1 cut(s) 629
BstZ17I GTATAC 1 cut(s) 395
BsuRI GGCC 3 cut(s) 128, 226, 577
BtsCI GGATG 1 cut(s) 577
BtsI GCAGTG 1 cut(s) 443
BtsIMutI CAGTG 4 cut(s) 331, 345, 384, 443
Cac8I GCNNGC 3 cut(s) 93, 215, 265
CaiI CAGNNNCTG 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 575
CviAII CATG 3 cut(s) 25, 67, 169
DdeI CTNAG 3 cut(s) 86, 254, 348
DpnI GATC 4 cut(s) 146, 334, 519, 631
DpnII GATC 4 cut(s) 144, 332, 517, 629
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 476, 655
Eco32I GATATC 1 cut(s) 403
EcoNI CCTNNNNNAGG 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 221
EcoRV GATATC 1 cut(s) 403
EcoT14I CCWWGG 2 cut(s) 476, 655
ErhI CCWWGG 2 cut(s) 476, 655
FaeI CATG 3 cut(s) 28, 70, 172
FalI AAGNNNNNCTT 2 cut(s) 616, 648
FatI CATG 3 cut(s) 24, 66, 168
FblI GTMKAC 1 cut(s) 394
Fnu4HI GCNGC 3 cut(s) 181, 381, 674
FokI GGATG 1 cut(s) 584
Fsp4HI GCNGC 3 cut(s) 181, 381, 674
FspBI CTAG 1 cut(s) 477
GluI GCNGC 3 cut(s) 181, 381, 674
GsaI CCCAGC 1 cut(s) 66
HaeIII GGCC 3 cut(s) 128, 226, 577
HapII CCGG 1 cut(s) 227
Hin1II CATG 3 cut(s) 28, 70, 172
HinfI GANTC 5 cut(s) 82, 136, 284, 416, 614
HpaII CCGG 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 251, 395
Hpy188I TCNGA 5 cut(s) 87, 277, 312, 360, 374
Hpy188III TCNNGA 1 cut(s) 557
Hpy8I GTNNAC 2 cut(s) 251, 395
HpyAV CCTTC 3 cut(s) 361, 523, 588
HpyCH4III ACNGT 2 cut(s) 326, 388
HpyCH4V TGCA 3 cut(s) 188, 542, 673
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 223, 539
HpyF3I CTNAG 3 cut(s) 86, 254, 348
Hsp92II CATG 3 cut(s) 28, 70, 172
Kzo9I GATC 4 cut(s) 144, 332, 517, 629
Lsp1109I GCAGC 3 cut(s) 167, 367, 685
LweI GCATC 1 cut(s) 551
MaeI CTAG 1 cut(s) 477
MaeIII GTNAC 2 cut(s) 229, 320
MalI GATC 4 cut(s) 146, 334, 519, 631
MboI GATC 4 cut(s) 144, 332, 517, 629
MboII GAAGA 4 cut(s) 39, 279, 573, 609
MflI RGATCY 1 cut(s) 629
MhlI GDGCHC 1 cut(s) 104
MluCI AATT 1 cut(s) 32
MlyI GAGTC 2 cut(s) 76, 623
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 8 cut(s) 55, 81, 105, 169, 274, 311, 316, 559
MseI TTAA 3 cut(s) 149, 270, 339
MspA1I CMGCKG 1 cut(s) 142
MspCI CTTAAG 2 cut(s) 148, 269
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 223
Mva1269I GAATGC 2 cut(s) 77, 354
MvaI CCWGG 1 cut(s) 223
MwoI GCNNNNNNNGC 3 cut(s) 72, 223, 539
NdeII GATC 4 cut(s) 144, 332, 517, 629
NlaIII CATG 3 cut(s) 28, 70, 172
NmuCI GTSAC 1 cut(s) 320
NspI RCATGY 1 cut(s) 28
NspV TTCGAA 1 cut(s) 419
PctI GAATGC 2 cut(s) 77, 354
PfeI GAWTC 3 cut(s) 136, 284, 416
PkrI GCNGC 3 cut(s) 182, 382, 675
PleI GAGTC 2 cut(s) 76, 622
PpsI GAGTC 2 cut(s) 76, 622
Psp6I CCWGG 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 62
PspGI CCWGG 1 cut(s) 221
PspPI GGNCC 1 cut(s) 575
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 629
PvuII CAGCTG 1 cut(s) 142
SaqAI TTAA 3 cut(s) 149, 270, 339
SatI GCNGC 3 cut(s) 181, 381, 674
Sau3AI GATC 4 cut(s) 144, 332, 517, 629
Sau96I GGNCC 1 cut(s) 575
SchI GAGTC 2 cut(s) 76, 623
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 1 cut(s) 551
SfuI TTCGAA 1 cut(s) 419
SmlI CTYRAG 2 cut(s) 148, 269
SmoI CTYRAG 2 cut(s) 148, 269
Sse9I AATT 1 cut(s) 32
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 221
StyI CCWWGG 2 cut(s) 476, 655
TaaI ACNGT 2 cut(s) 326, 388
TaqI TCGA 2 cut(s) 365, 419
TasI AATT 1 cut(s) 32
TfiI GAWTC 3 cut(s) 136, 284, 416
Tru1I TTAA 3 cut(s) 149, 270, 339
Tru9I TTAA 3 cut(s) 149, 270, 339
TscAI CASTG 4 cut(s) 331, 352, 391, 450
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 3 cut(s) 180, 380, 673
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 3 cut(s) 28, 39, 668
TspRI CASTG 4 cut(s) 331, 352, 391, 450
Vha464I CTTAAG 2 cut(s) 148, 269
XagI CCTNNNNNAGG 1 cut(s) 109
XceI RCATGY 1 cut(s) 28
XmaJI CCTAGG 1 cut(s) 476
XmiI GTMKAC 1 cut(s) 394
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.