Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003181

Physical Location & Seq

Genomic Coordinates Forward (+)

61532543 .. 61533695

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004701

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGACCGTGAGAGACGAAACCCTCACAACTCCTCCTCGCACTCCAATCCCCGACCTCCTCCACAATTTCATCTTCTCCCACTCCCACACTCTCCTCTTCGCCGCCCCCGACCTCTCTCCGCCGGAGGTGACGTCAGAGGCCTTCTTTCTCCTCACCTATGCTTTGCTTGTTCATTTTAACCTCAGTAAATTTCGATTTCAGATCCATGACGTCGGCCATCGTCTTCCTCTGGAATCAATCCCCGTCCTTCGTTTTAGGCGTATTATGAGCACCTGCCAGAGGAAGTGTTCTCCGGCTGATGAGATTCAGCAGGTGAAGTTCCTTCTGCGCGTAATTGAGAGCTGTCATTCGGAGTTAAGCAGCTCATCGCTTTCGATTTGCAAACAGAGCTCTGCTTCTGAAGTGGGAAAGAGAAAGCCAATGCCGTTTTATTTATCTCTCCTGCATTGTCTGCACTTGACTCTCGCAGATCTCAAGTGTTCCCTCTCTGGCCATGTGTCTGGTTTTGTAGCTGCTTTGCGAATGTTCTTGTCCTATGGTATTAGTAGTCGAAGTCAGCTTACCAGGCCGGTAACCGGTCAGAAGGAGAGTGAACTTGGTGTAGCCAGCCTCAAAGTCTGGTTTGGAAAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4042 HEAT

Protein Analysis

212

Amino Acids

23.67

Weight (kDa)

9.28

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38120 AT4G38120 AT4G38120 AT4G38120
fragaria_vesca	FvH4_5g10170 FvH4_5g10170 FvH4_5g10170
malus_domestica	MD06G1127500.v1.1 MD14G1142800.v1.1 MD14G1142900.v1.1 MD14G1143100.v1.1
prunus_persica	Prupe.5G137300_v2.0.a1 Prupe.5G137300_v2.0.a1
pyrus_communis	pycom06g11740 pycom06g11750 pycom06g11760 pycom14g11840 pycom14g11850 pycom14g11860
rosa_chinensis	RchiOBHm_Chr7g0188101 RchiOBHm_Chr7g0188111 RchiOBHm_Chr7g0188121 RchiOBHm_Chr7g0188131
rosa_laevigata	RLG00000004701 RLG00000004726
rosa_multiflora	Rmu_co8421553.1_g000001 Rmu_ssc0000422.1_g000024
rosa_roxburghii	Rroxscaffold_3G00266750
rosa_rugosa	Rorug06G0488300
rosa_samantha	Rh7AG092500 Rh7AG092600 Rh7BG094200 Rh7CG093700 Rh7CG093900 Rh7DG094500 Rh7DG094600
rosa_wichuraiana	Rw7G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	281, 301
AatII	GACGTC	2 cut(s)	134, 213
Acc36I	ACCTGC	2 cut(s)	281, 301
AccII	CGCG	1 cut(s)	330
AciI	CCGC	2 cut(s)	102, 119
AclWI	GGATC	1 cut(s)	196
AcoI	YGGCCR	2 cut(s)	214, 490
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	2 cut(s)	131, 210
AfiI	CCNNNNNNNGG	2 cut(s)	279, 575
AgeI	ACCGGT	1 cut(s)	575
AjnI	CCWGG	1 cut(s)	563
AluBI	AGCT	5 cut(s)	342, 363, 390, 512, 559
AluI	AGCT	5 cut(s)	342, 363, 390, 512, 559
Alw21I	GWGCWC	2 cut(s)	272, 392
Alw26I	GTCTC	1 cut(s)	6
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	4 cut(s)	138, 214, 490, 566
ApeKI	GCWGC	2 cut(s)	360, 512
ApoI	RAATTY	1 cut(s)	188
AsiGI	ACCGGT	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	330
AsuHPI	GGTGA	3 cut(s)	139, 145, 325
BalI	TGGCCA	1 cut(s)	492
BanII	GRGCYC	1 cut(s)	392
BarI	GAAGNNNNNNTAC	2 cut(s)	544, 576
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	2 cut(s)	272, 392
BbvI	GCAGC	2 cut(s)	372, 499
BccI	CCATC	1 cut(s)	225
BceAI	ACGGC	1 cut(s)	409
BciT130I	CCWGG	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	6
BfuAI	ACCTGC	2 cut(s)	281, 301
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	3 cut(s)	102, 361, 513
BlsI	GCNGC	3 cut(s)	103, 362, 514
Bme1390I	CCNGG	1 cut(s)	565
BmrFI	CCNGG	1 cut(s)	565
BpiI	GAAGAC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	458
BsaHI	GRCGYC	2 cut(s)	131, 210
BsaWI	WCCGGW	1 cut(s)	575
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 116, 146
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 575
Bse118I	RCCGGY	2 cut(s)	568, 575
BseBI	CCWGG	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	279, 575
BseMII	CTCAG	1 cut(s)	196
BseRI	GAGGAG	5 cut(s)	21, 24, 47, 83, 140
BseXI	GCAGC	2 cut(s)	372, 499
BsgI	GTGCAG	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	4 cut(s)	140, 216, 492, 568
BshTI	ACCGGT	1 cut(s)	575
BsiHKAI	GWGCWC	2 cut(s)	272, 392
BsiSI	CCGG	4 cut(s)	122, 293, 569, 576
BslI	CCNNNNNNNGG	2 cut(s)	279, 575
BsmAI	GTCTC	1 cut(s)	6
BsmBI	CGTCTC	1 cut(s)	6
BsnI	GGCC	4 cut(s)	140, 216, 492, 568
Bsp1286I	GDGCHC	2 cut(s)	272, 392
Bsp143I	GATC	2 cut(s)	201, 469
BspACI	CCGC	2 cut(s)	102, 119
BspANI	GGCC	4 cut(s)	140, 216, 492, 568
BspCNI	CTCAG	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	330
BspMI	ACCTGC	2 cut(s)	281, 301
BspPI	GGATC	1 cut(s)	196
BsrFI	RCCGGY	2 cut(s)	568, 575
BssAI	RCCGGY	2 cut(s)	568, 575
BssMI	GATC	2 cut(s)	201, 469
BssNI	GRCGYC	2 cut(s)	131, 210
Bst2UI	CCWGG	1 cut(s)	565
Bst4CI	ACNGT	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	101
BstACI	GRCGYC	2 cut(s)	131, 210
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	607
BstDEI	CTNAG	1 cut(s)	182
BstEII	GGTNACC	1 cut(s)	571
BstENI	CCTNNNNNAGG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	2 cut(s)	204, 472
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	2 cut(s)	201, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	387, 451, 565
BstNI	CCWGG	1 cut(s)	565
BstPI	GGTNACC	1 cut(s)	571
BstSCI	CCNGG	1 cut(s)	563
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	372, 499
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	2 cut(s)	201, 469
BstXI	CCANNNNNNTGG	1 cut(s)	500
BstYI	RGATCY	2 cut(s)	201, 469
BsuRI	GGCC	4 cut(s)	140, 216, 492, 568
BtgZI	GCGATG	1 cut(s)	351
BveI	ACCTGC	2 cut(s)	281, 301
Cac8I	GCNNGC	1 cut(s)	607
CfoI	GCGC	1 cut(s)	330
Cfr10I	RCCGGY	2 cut(s)	568, 575
CspAI	ACCGGT	1 cut(s)	575
CviAII	CATG	2 cut(s)	206, 494
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	2 cut(s)	203, 471
DpnII	GATC	2 cut(s)	201, 469
EaeI	YGGCCR	2 cut(s)	214, 490
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EciI	GGCGGA	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	390
Eco147I	AGGCCT	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	420
Eco91I	GGTNACC	1 cut(s)	571
EcoICRI	GAGCTC	1 cut(s)	390
EcoNI	CCTNNNNNAGG	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	563
EcoT38I	GRGCYC	1 cut(s)	392
Esp3I	CGTCTC	1 cut(s)	6
FaeI	CATG	2 cut(s)	209, 497
FaiI	YATR	5 cut(s)	159, 207, 266, 495, 537
FatI	CATG	2 cut(s)	205, 493
Fnu4HI	GCNGC	3 cut(s)	102, 361, 513
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	3 cut(s)	102, 361, 513
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	3 cut(s)	102, 361, 513
HaeIII	GGCC	4 cut(s)	140, 216, 492, 568
HapII	CCGG	4 cut(s)	122, 293, 569, 576
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	2 cut(s)	131, 210
Hin1II	CATG	2 cut(s)	209, 497
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HinfI	GANTC	3 cut(s)	233, 304, 460
HpaII	CCGG	4 cut(s)	122, 293, 569, 576
HphI	GGTGA	3 cut(s)	139, 145, 325
Hpy166II	GTNNAC	1 cut(s)	593
Hpy188I	TCNGA	5 cut(s)	136, 201, 352, 400, 582
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	1 cut(s)	593
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	4 cut(s)	151, 257, 332, 577
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	2 cut(s)	131, 210
HpyCH4V	TGCA	3 cut(s)	381, 445, 454
HpyF10VI	GCNNNNNNNGC	3 cut(s)	387, 451, 565
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	2 cut(s)	131, 210
Hsp92I	GRCGYC	2 cut(s)	131, 210
Hsp92II	CATG	2 cut(s)	209, 497
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	201, 469
Lsp1109I	GCAGC	2 cut(s)	372, 499
MaeII	ACGT	2 cut(s)	131, 210
MaeIII	GTNAC	2 cut(s)	127, 571
MalI	GATC	2 cut(s)	203, 471
MboI	GATC	2 cut(s)	201, 469
MboII	GAAGA	3 cut(s)	64, 88, 215
MflI	RGATCY	2 cut(s)	201, 469
MhlI	GDGCHC	2 cut(s)	272, 392
MlsI	TGGCCA	1 cut(s)	492
MluCI	AATT	3 cut(s)	64, 188, 333
MluNI	TGGCCA	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	454
Mox20I	TGGCCA	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	492
MseI	TTAA	2 cut(s)	177, 356
Msp20I	TGGCCA	1 cut(s)	492
MspI	CCGG	4 cut(s)	122, 293, 569, 576
MspR9I	CCNGG	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	565
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	387, 451, 565
NdeII	GATC	2 cut(s)	201, 469
NlaIII	CATG	2 cut(s)	209, 497
NmuCI	GTSAC	1 cut(s)	127
PaqCI	CACCTGC	2 cut(s)	281, 301
PceI	AGGCCT	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 256
PfeI	GAWTC	2 cut(s)	233, 304
PinAI	ACCGGT	1 cut(s)	575
PkrI	GCNGC	3 cut(s)	103, 362, 514
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
Psp124BI	GAGCTC	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	563
PspEI	GGTNACC	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	563
PsuI	RGATCY	2 cut(s)	201, 469
SacI	GAGCTC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	177, 356
SatI	GCNGC	3 cut(s)	102, 361, 513
Sau3AI	GATC	2 cut(s)	201, 469
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	1 cut(s)	565
SduI	GDGCHC	2 cut(s)	272, 392
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	3 cut(s)	64, 188, 333
SseBI	AGGCCT	1 cut(s)	140
SsiI	CCGC	2 cut(s)	102, 119
SstI	GAGCTC	1 cut(s)	392
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	563
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	2 cut(s)	134, 213
TaqI	TCGA	3 cut(s)	193, 374, 550
TasI	AATT	3 cut(s)	64, 188, 333
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	233, 304
Tru1I	TTAA	2 cut(s)	177, 356
Tru9I	TTAA	2 cut(s)	177, 356
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	360, 512
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	58, 161
XagI	CCTNNNNNAGG	1 cut(s)	277
XapI	RAATTY	1 cut(s)	188
ZraI	GACGTC	2 cut(s)	132, 211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.