Rmu_ssc0000422.1_g000024

HEAT repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000422.1
Physical Location & Seq
Forward (+)
106227 .. 121731
15505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000422.1_g000024.1.cds

Sequence Viewer

Length: 5319 bp
atgggagggactgagaagacgagcaaggtcgttatgacggcgtctgtatcacaatcgccggtcaggtggtggcggacggcgtttctgaccgtcagagacgaaaccctcacgactcctcctcgcactccaatcccggaactcctccacaatttcatcttctcccactcccacactctcctctccgccgcccccgacctccctccgcaggaggtgacgtcagatttgttgttcctaacggaattgatcaccaccaagtctcacggcgccggcgatttgacccctacctacgctcacacaattcacctgatccatgacgttagccatcgtcttcctctggaagtcaattcagcttcgtggactctcatgcttgacggtttcggcaacatgcttcaattcttcattgcctcttcgtcatttgcgcccagcatggaatgcttacagactctgaggcgtgttatgagcacctaccagaggaagtgttttccggccgatgagattcagctggttaagttccttctgcgcgtaattgagagctgtcattcagagttaagtagctcattgcattcaattcgcaaccagagctctgcttctgaagttggaaagagaaagccatcgccgcaacattgcagcttatgggaagctcagacccttgcattcaatatgcttggagaaacaatctctagggccggctcgttgtttcccgtggatatctggaaatcatctattgaggtttttaggaaagtgatggatgtattggcagctaaaagcctgcttgtagaagacactgtaatgtcgaggttttatttatctctcctgcattgtctgcacttgactctctcagatcgtaagtgttcccactctgaccatgtgtcaggttttgtagctgctttgcgaatgttcttgtcctatggtattagtagtagaagccagcttaccaggccggcaactggtcaaaaggagagtgaacttagtgtagccagccttaagtctggtttggaagatcctaaaaagacagatcgtagtccatatagacctccacacctacgcaaaagggacagttcaaagcagattggagctcgaggttctcaaggtttatcagatcaggaatcttccacgcttgactttgcctcatcagattcagattatagtgacagtgatggatcacttaaagacactgagagcattcagaaatcgaaggtcagagtagctgccactgtttgtatacaggtagcagagtttaaagagtcttctaaaaggggatcttttacagcactttcaagttcccttggacatatactaatgcagcttcatacaggtattttatacttaattcaacgagaaactcatagtagattgctggcatccttgttcaagattctcatgcttttgatatcatctacaccttgcttgactacagctctgaatacctcaccatcctcaccgcaaatcaaagaaatgcttcagagagagatatttaatggttttgccgaggccaaaaagaagtcgggtgttctttttacgttgtttcaattttcagaacaagttagcaacctgccaatatgcttcgaggctcttcaggcgcttagggctgtgtcgcacaattaccccagtataatgttttcctgttgggaacaaatttccaccattgtttatcaccttttgagggcagctactcctgaagttcctgcaggacaatggaaagggcatactggaaattctgttggattcattggggaaaaactcattacagctgctattagagttttggatgaatctcttcgtgcaatatctggatttaaaggaactgaagaccctttagacgataaactacttgatgccccatttacttctgactgcataaggatgaagaaagtttcatcagctccttcatatgaactagagagcttggaaaatactagagatgaacccacatcatgtcagtctggaattgagcaatggtgtgaggcaattgagaagcatatgcctttaattctacaacatacttctgcaatggtgagagctgcctcagttacctgttttgcgggtataacttcttctgtgttctgcacactctcgaaggaaaaacgggacttcattctttcatctttagttcgtgctgccgttcacggtgatgtaccttcagttagggcagctgcttgtcgggccattggtgtcatttcatgttttcctcaagtttctcaaagtgcagagatccttgataagtttgttcatgctgtggagagtaacactcgtgatcctttggtctcggtccgaataactgcttcttgggctttggcaaacatatgcgattctatccatcattgtattgatgattttagcttggaaaagactgaaggctctcttaaaatttctcaattatttaccttattaaccgagtgcgctttgcgtctgactaaggatggagacaagattaaatcaaatgctgtaagagctctagggaatctttcaagatctatcaaatgtacaattgaatttgaggcgccaggggattatgggaaaggttgtcaaagagatgtatcaatatcatactatccagcttctttgagagattcgcattggcttgatagggttgttcaggcatttatttcttgtgttacgactggtaatgtcaaggtccaatggaatgtttgtcatgctttgagcaacctatttctgaacgagacattaagactgcaagacatggattgggctccatctgtgtttagtattcttctactgctgttacgtgattcttccaactttaagatcagaatccaagcagctgctgctctggctgttccagcatcggtccaatggaatgtttgtcatgctttgagcaacctatttctgaacgagacattaagactgcaagacatggattgggctccatctgtgttcagtattcttctactactgttacgtgattcttccaactttaagatcagaatccaagcagctgctgctctggctgttccagcatcggtgcatgattatggggaatctttctcagacgtcatccagggtctggagcatatattagagaatcaaggttcagaccagattgcatcaccatcaaatttcaaatatagggttgcccttgaaaagcagttaacctcaaccatgttgcatgttctcatcctcgcttcaagctctgatcatgaaccagtgaaagtttttcttgtaaaaaaagcctcattctttgaagactggttcaaggcactgtgctcatcactaggagagtcgagtagtcaaccggaacttgaaaataagaagtcccttgagaacccaaagaaagagatgatatgcaatgcaattcggtcactaattcagctgtacaatgacaggaagcatcatgcaattgccgagaaatttgagaagttagagaaaagcatacaattcagcttctgtttcttgcaattagagaccaaaatggctagggactatggtggtggatcaccaaagcaccaccagcttgaatccaagaagaagaggctgactatgatctttggggttagtgcactttgcatagtaagttactgcttaggagcttggcaaaccacttctgctcccgtcagtcggtctgaactctacaacagggttggttgcgatgatgtttctagccaaatgaagacctccaatgcctcatcggagtctgttgcacctcacttggatttcgaaagccatcaccaagtgaatatcaacaaatccgaggcagtccagaagttcccaccgtgtgccatgacgtacagtgagtacactccttgccaggatccgaatagggggagaaaattcgacaggaaaatgttgaagtacagagagcggcattgccccactaaagaagaacaactcctttgcttgataccggctccaccaaagtacaagactccttttatgtggcctcagagccgggatttcgcctggtatgacaacattccgcatagggagcttagcattgagaaagctgttcagaattggattcaagttgagggtgaccggtttagattccctggtggaggtaccatgtttccaaaaggagctgattcttatatagatgacattaatgcgctcattcctcttactaagggtcaaatcagaactgcaattgacacaggctgtggtgttgcaagttggggtgcttacttgttgaagaggaatatcttgacaatgtcttttgctccaagagatacgcatgcagcacaggtccagttcgcattagagagaggagttcctgctatgattggtgtcatgggttcaaaaaggcttccctacccggccagggctttcgatatggctcactgttcccgctgcttgataccgtggcagaattatgatggtctgtatctaattgaagtggacagagttctaaggccgggcgcttactggattctttccgggccccctattaactggaaaaaacactggagaggatgggagagaacccaagaagacttgaaacaagagcaagatgctattgaggctgttgcgaagagcttgtgctggaagaaggtgattcagaagaatgatcttgctatctggcaaaagcctcttaatcacattgaatgcatcagaagcaggaatgtcgttaagacaccacatctatgcaaatcagacaatccagatatggcttgggacagaaatatggaaacttgcattacacctctaccagaggcaaacaatccgaatgatgttgctggtggggcattggagaagtggcctgagcgtgcatttgccatcccgcctagaatcagcagtggttcaataccaggaatcaccccggagaaacttaaagaggataatgatctgtggaagcagaggatggaacgttacaagcggattgtaccaatttccaaaggacggtataggaatgtgatggacatgaatgcttacctcggtggatttgctgctgcagcgtcgaaatatccagtctgggttatgaacacagttcctgccaatacaaaccaggacactcttggtgtgatttatgaaaggggtttcattggtacctaccaggattggtgtgaaggattttcgacgtaccccagaacttatgatctcatccatgctggcggtgtcttcagtatatatcaggacaggtgtgacatcacatacatattgctggaaatggatagaattctgaggccagaaggaaccgttatatttagggatactgtggagatacttacgaagataaaggccattacagatgggatgaggtggaagagtcaaattatggatcatgagagtggaccttttaatccagagaaaattctagttgctgtcaaaacctactggactggtgaagctaataagcaaagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1772

Amino Acids

198.64

Weight (kDa)

8.31

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 218, 3015
Acc36I ACCTGC 1 cut(s) 1560
Acc65I GGTACC 2 cut(s) 4016, 5000
AccB1I GGYRCC 4 cut(s) 263, 2500, 4016, 5000
AccB7I CCANNNNNTGG 1 cut(s) 3025
AccBSI CCGCTC 1 cut(s) 3820
AccI GTMKAC 1 cut(s) 1222
AccII CGCG 1 cut(s) 522
AclI AACGTT 1 cut(s) 4822
AcoI YGGCCR 2 cut(s) 486, 4272
AcsI RAATTY 9 cut(s) 1635, 1714, 2367, 2492, 3076, 3368, 3788, 5130, 5265
AcuI CTGAAG 8 cut(s) 612, 1445, 1559, 1698, 1827, 2124, 2373, 5059
AcyI GRCGYC 5 cut(s) 41, 215, 264, 2501, 3012
AdeI CACNNNGTG 2 cut(s) 3691, 3734
AflII CTTAAG 1 cut(s) 983
AgeI ACCGGT 1 cut(s) 3993
AhdI GACNNNNNGTC 1 cut(s) 868
Alw21I GWGCWC 6 cut(s) 464, 584, 1078, 2455, 3227, 3520
Alw26I GTCTC 7 cut(s) 90, 261, 2269, 2418, 2675, 2849, 3416
Alw44I GTGCAC 1 cut(s) 3516
AlwNI CAGNNNCTG 6 cut(s) 445, 2786, 2960, 3025, 3405, 4946
Ama87I CYCGRG 1 cut(s) 1077
ApaI GGGCCC 1 cut(s) 4398
ApaLI GTGCAC 1 cut(s) 3516
ApoI RAATTY 9 cut(s) 1635, 1714, 2367, 2492, 3076, 3368, 3788, 5130, 5265
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
AseI ATTAAT 1 cut(s) 4059
AsiGI ACCGGT 1 cut(s) 3993
Asp700I GAANNNNTTC 2 cut(s) 1458, 1776
Asp718I GGTACC 2 cut(s) 4016, 5000
AspLEI GCGC 8 cut(s) 266, 421, 522, 1582, 2402, 2503, 4066, 4376
AspS9I GGNCC 9 cut(s) 684, 2163, 2269, 2635, 2809, 4201, 4394, 4395, 5246
AsuC2I CCSGG 6 cut(s) 134, 3908, 4271, 4371, 4393, 4775
AsuII TTCGAA 1 cut(s) 3675
AvaI CYCGRG 1 cut(s) 1077
AvaII GGWCC 5 cut(s) 2269, 2635, 2809, 4201, 5246
BaeGI GKGCMC 2 cut(s) 3520, 4398
BamHI GGATCC 1 cut(s) 3769
BanI GGYRCC 4 cut(s) 263, 2500, 4016, 5000
BanII GRGCYC 6 cut(s) 584, 1078, 2455, 2713, 2887, 4398
BarI GAAGNNNNNNTAC 4 cut(s) 916, 948, 2038, 2070
BauI CACGAG 1 cut(s) 2250
BbsI GAAGAC 9 cut(s) 23, 320, 786, 1239, 1815, 3210, 3635, 4452, 5065
Bbv12I GWGCWC 6 cut(s) 464, 584, 1078, 2455, 3227, 3520
BceAI ACGGC 4 cut(s) 54, 93, 277, 2105
BcgI CGANNNNNNTGC 4 cut(s) 551, 585, 4561, 4595
BciVI GTATCC 1 cut(s) 5158
BclI TGATCA 2 cut(s) 243, 3154
BcnI CCSGG 6 cut(s) 134, 3908, 4271, 4371, 4393, 4775
BcoDI GTCTC 7 cut(s) 90, 261, 2269, 2418, 2675, 2849, 3416
BfmI CTRYAG 3 cut(s) 1413, 1686, 4905
BfoI RGCGCY 4 cut(s) 267, 1583, 2504, 4377
BfrI CTTAAG 1 cut(s) 983
BfuAI ACCTGC 1 cut(s) 1560
BfuI GTATCC 1 cut(s) 5158
BglII AGATCT 1 cut(s) 2471
BlpI GCTNAGC 1 cut(s) 3947
Bme18I GGWCC 5 cut(s) 2269, 2635, 2809, 4201, 5246
BmeRI GACNNNNNGTC 1 cut(s) 868
BmeT110I CYCGRG 1 cut(s) 1077
BmgT120I GGNCC 9 cut(s) 684, 2163, 2269, 2635, 2809, 4201, 4394, 4395, 5246
BmrI ACTGGG 1 cut(s) 1602
BmsI GCATC 8 cut(s) 1370, 1825, 2813, 2987, 3074, 3358, 4456, 4572
BmuI ACTGGG 1 cut(s) 1602
BpiI GAAGAC 9 cut(s) 23, 320, 786, 1239, 1815, 3210, 3635, 4452, 5065
BplI GAGNNNNNCTC 2 cut(s) 2233, 2265
BpmI CTGGAG 2 cut(s) 3047, 4441
Bpu10I CCTNAGC 3 cut(s) 1583, 3541, 4716
Bpu1102I GCTNAGC 1 cut(s) 3947
Bpu14I TTCGAA 1 cut(s) 3675
BpuEI CTTGAG 3 cut(s) 1071, 2175, 3299
BpuMI CCSGG 6 cut(s) 134, 3908, 4271, 4371, 4393, 4775
BsaAI YACGTR 2 cut(s) 2747, 2921
BsaBI GATNNNNATC 3 cut(s) 2771, 2945, 4797
BsaHI GRCGYC 5 cut(s) 41, 215, 264, 2501, 3012
BsaI GGTCTC 2 cut(s) 2269, 3416
BsaWI WCCGGW 2 cut(s) 3253, 3993
BsaXI ACNNNNNCTCC 6 cut(s) 100, 130, 200, 230, 3550, 3580
Bse118I RCCGGY 6 cut(s) 58, 266, 686, 940, 3862, 3993
Bse3DI GCAATG 7 cut(s) 399, 557, 622, 1961, 2016, 3313, 3823
Bse8I GATNNNNATC 3 cut(s) 2771, 2945, 4797
BseJI GATNNNNATC 3 cut(s) 2771, 2945, 4797
BseMI GCAATG 7 cut(s) 399, 557, 622, 1961, 2016, 3313, 3823
BseMII CTCAG 9 cut(s) 437, 656, 852, 1167, 2040, 3021, 3914, 4707, 5126
BseRI GAGGAG 5 cut(s) 105, 108, 131, 167, 4236
BseSI GKGCMC 2 cut(s) 3520, 4398
BseX3I CGGCCG 1 cut(s) 486
BseYI CCCAGC 1 cut(s) 422
BsgI GTGCAG 3 cut(s) 809, 2050, 2226
Bsh1236I CGCG 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 489
BshNI GGYRCC 4 cut(s) 263, 2500, 4016, 5000
BshTI ACCGGT 1 cut(s) 3993
BsiEI CGRYCG 1 cut(s) 489
BsiHKAI GWGCWC 6 cut(s) 464, 584, 1078, 2455, 3227, 3520
BsiHKCI CYCGRG 1 cut(s) 1077
BslFI GGGAC 6 cut(s) 22, 1067, 2102, 3259, 3452, 4643
BsmAI GTCTC 7 cut(s) 90, 261, 2269, 2418, 2675, 2849, 3416
BsmBI CGTCTC 1 cut(s) 90
BsmFI GGGAC 6 cut(s) 22, 1067, 2102, 3259, 3452, 4643
BsmI GAATGC 6 cut(s) 437, 562, 653, 1182, 4565, 4885
Bso31I GGTCTC 2 cut(s) 2269, 3416
BsoBI CYCGRG 1 cut(s) 1077
Bsp119I TTCGAA 1 cut(s) 3675
Bsp120I GGGCCC 1 cut(s) 4394
Bsp1286I GDGCHC 9 cut(s) 464, 584, 1078, 2455, 2713, 2887, 3227, 3520, 4398
Bsp1407I TGTACA 2 cut(s) 2483, 3333
Bsp1720I GCTNAGC 1 cut(s) 3947
BspFNI CGCG 1 cut(s) 522
BspHI TCATGA 2 cut(s) 3157, 5236
BspMAI CTGCAG 2 cut(s) 1690, 4909
BspMI ACCTGC 1 cut(s) 1560
BspQI GCTCTTC 2 cut(s) 1578, 4481
BspT104I TTCGAA 1 cut(s) 3675
BspT107I GGYRCC 4 cut(s) 263, 2500, 4016, 5000
BspTI CTTAAG 1 cut(s) 983
BspTNI GGTCTC 2 cut(s) 2269, 3416
BsrBI CCGCTC 1 cut(s) 3820
BsrDI GCAATG 7 cut(s) 399, 557, 622, 1961, 2016, 3313, 3823
BsrFI RCCGGY 6 cut(s) 58, 266, 686, 940, 3862, 3993
BsrGI TGTACA 2 cut(s) 2483, 3333
BssAI RCCGGY 6 cut(s) 58, 266, 686, 940, 3862, 3993
BssNAI GTATAC 1 cut(s) 1223
BssNI GRCGYC 5 cut(s) 41, 215, 264, 2501, 3012
BssSI CACGAG 1 cut(s) 2250
BssT1I CCWWGG 1 cut(s) 1285
Bst1107I GTATAC 1 cut(s) 1223
Bst2BI CACGAG 1 cut(s) 2250
Bst6I CTCTTC 7 cut(s) 412, 1578, 1782, 3482, 4142, 4481, 5213
BstACI GRCGYC 5 cut(s) 41, 215, 264, 2501, 3012
BstAFI CTTAAG 1 cut(s) 983
BstAPI GCANNNNNTGC 4 cut(s) 432, 823, 2786, 2960
BstAUI TGTACA 2 cut(s) 2483, 3333
BstBAI YACGTR 2 cut(s) 2747, 2921
BstBI TTCGAA 1 cut(s) 3675
BstDSI CCRYGG 2 cut(s) 702, 4316
BstEII GGTNACC 1 cut(s) 3989
BstENI CCTNNNNNAGG 2 cut(s) 469, 4011
BstFNI CGCG 1 cut(s) 522
BstH2I RGCGCY 4 cut(s) 267, 1583, 2504, 4377
BstHHI GCGC 8 cut(s) 266, 421, 522, 1582, 2402, 2503, 4066, 4376
BstMAI GTCTC 7 cut(s) 90, 261, 2269, 2418, 2675, 2849, 3416
BstMCI CGRYCG 1 cut(s) 489
BstNSI RCATGY 3 cut(s) 388, 3131, 4193
BstPI GGTNACC 1 cut(s) 3989
BstSFI CTRYAG 3 cut(s) 1413, 1686, 4905
BstSLI GKGCMC 2 cut(s) 3520, 4398
BstUI CGCG 1 cut(s) 522
BstV2I GAAGAC 9 cut(s) 23, 320, 786, 1239, 1815, 3210, 3635, 4452, 5065
BstX2I RGATCY 5 cut(s) 1000, 1259, 2211, 2471, 3769
BstYI RGATCY 5 cut(s) 1000, 1259, 2211, 2471, 3769
BstZ17I GTATAC 1 cut(s) 1223
BstZI CGGCCG 1 cut(s) 486
BsuI GTATCC 1 cut(s) 5158
BtgI CCRYGG 2 cut(s) 702, 4316
BtgZI GCGATG 2 cut(s) 597, 3621
BtsI GCAGTG 1 cut(s) 4756
BveI ACCTGC 1 cut(s) 1560
CaiI CAGNNNCTG 6 cut(s) 445, 2786, 2960, 3025, 3405, 4946
CciI TCATGA 2 cut(s) 3157, 5236
CfoI GCGC 8 cut(s) 266, 421, 522, 1582, 2402, 2503, 4066, 4376
Cfr10I RCCGGY 6 cut(s) 58, 266, 686, 940, 3862, 3993
Cfr13I GGNCC 9 cut(s) 684, 2163, 2269, 2635, 2809, 4201, 4394, 4395, 5246
CpoI CGGWCCG 1 cut(s) 2269
CseI GACGC 3 cut(s) 30, 2396, 4899
CspAI ACCGGT 1 cut(s) 3993
CspI CGGWCCG 1 cut(s) 2269
DinI GGCGCC 2 cut(s) 265, 2502
DraI TTTAAA 2 cut(s) 1240, 1798
DraIII CACNNNGTG 2 cut(s) 3691, 3734
DriI GACNNNNNGTC 1 cut(s) 868
EaeI YGGCCR 2 cut(s) 486, 4272
EagI CGGCCG 1 cut(s) 486
Eam1104I CTCTTC 7 cut(s) 412, 1578, 1782, 3482, 4142, 4481, 5213
Eam1105I GACNNNNNGTC 1 cut(s) 868
EarI CTCTTC 7 cut(s) 412, 1578, 1782, 3482, 4142, 4481, 5213
EciI GGCGGA 2 cut(s) 88, 172
Ecl136II GAGCTC 3 cut(s) 582, 1076, 2453
EclXI CGGCCG 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 1285
Eco24I GRGCYC 6 cut(s) 584, 1078, 2455, 2713, 2887, 4398
Eco31I GGTCTC 2 cut(s) 2269, 3416
Eco32I GATATC 2 cut(s) 709, 1392
Eco47I GGWCC 5 cut(s) 2269, 2635, 2809, 4201, 5246
Eco52I CGGCCG 1 cut(s) 486
Eco53kI GAGCTC 3 cut(s) 582, 1076, 2453
Eco57I CTGAAG 8 cut(s) 612, 1445, 1559, 1698, 1827, 2124, 2373, 5059
Eco88I CYCGRG 1 cut(s) 1077
Eco91I GGTNACC 1 cut(s) 3989
EcoICRI GAGCTC 3 cut(s) 582, 1076, 2453
EcoNI CCTNNNNNAGG 2 cut(s) 469, 4011
EcoO109I RGGNCCY 1 cut(s) 4395
EcoO65I GGTNACC 1 cut(s) 3989
EcoRI GAATTC 1 cut(s) 5130
EcoRV GATATC 2 cut(s) 709, 1392
EcoT14I CCWWGG 1 cut(s) 1285
EcoT22I ATGCAT 1 cut(s) 4565
EcoT38I GRGCYC 6 cut(s) 584, 1078, 2455, 2713, 2887, 4398
EgeI GGCGCC 2 cut(s) 265, 2502
EheI GGCGCC 2 cut(s) 265, 2502
ErhI CCWWGG 1 cut(s) 1285
Esp3I CGTCTC 1 cut(s) 90
FalI AAGNNNNNCTT 8 cut(s) 1246, 1278, 1443, 1475, 2346, 2378, 3162, 3194
FaqI GGGAC 6 cut(s) 22, 1067, 2102, 3259, 3452, 4643
FauI CCCGC 3 cut(s) 2035, 4310, 4743
FauNDI CATATG 3 cut(s) 1891, 1980, 2303
FbaI TGATCA 2 cut(s) 243, 3154
FblI GTMKAC 1 cut(s) 1222
FriOI GRGCYC 6 cut(s) 584, 1078, 2455, 2713, 2887, 4398
GlaI GCGC 8 cut(s) 265, 420, 521, 1581, 2401, 2502, 4065, 4375
GsaI CCCAGC 1 cut(s) 426
GsuI CTGGAG 2 cut(s) 3047, 4441
HaeII RGCGCY 4 cut(s) 267, 1583, 2504, 4377
HgaI GACGC 3 cut(s) 30, 2396, 4899
HhaI GCGC 8 cut(s) 266, 421, 522, 1582, 2402, 2503, 4066, 4376
Hin1I GRCGYC 5 cut(s) 41, 215, 264, 2501, 3012
Hin6I GCGC 8 cut(s) 264, 419, 520, 1580, 2400, 2501, 4064, 4374
HinP1I GCGC 8 cut(s) 264, 419, 520, 1580, 2400, 2501, 4064, 4374
HincII GTYRAC 2 cut(s) 3111, 3251
HindII GTYRAC 2 cut(s) 3111, 3251
HpaI GTTAAC 1 cut(s) 3111
Hpy99I CGWCG 2 cut(s) 4915, 5035
HpyAV CCTTC 9 cut(s) 524, 1189, 1896, 2071, 2148, 2348, 4498, 5015, 5138
HpyCH4IV ACGT 9 cut(s) 215, 315, 1520, 2746, 2920, 3012, 3743, 4822, 5033
HpySE526I ACGT 9 cut(s) 215, 315, 1520, 2746, 2920, 3012, 3743, 4822, 5033
Hsp92I GRCGYC 5 cut(s) 41, 215, 264, 2501, 3012
HspAI GCGC 8 cut(s) 264, 419, 520, 1580, 2400, 2501, 4064, 4374
KasI GGCGCC 2 cut(s) 263, 2500
KpnI GGTACC 2 cut(s) 4020, 5004
KroI GCCGGC 3 cut(s) 266, 686, 940
KroNI GCCGGC 3 cut(s) 268, 688, 942
Ksp22I TGATCA 2 cut(s) 243, 3154
KspAI GTTAAC 1 cut(s) 3111
LguI GCTCTTC 2 cut(s) 1578, 4481
LweI GCATC 8 cut(s) 1370, 1825, 2813, 2987, 3074, 3358, 4456, 4572
MaeII ACGT 9 cut(s) 215, 315, 1520, 2746, 2920, 3012, 3743, 4822, 5033
MbiI CCGCTC 1 cut(s) 3820
MfeI CAATTG 4 cut(s) 1968, 2487, 3357, 4101
MflI RGATCY 5 cut(s) 1000, 1259, 2211, 2471, 3769
MhlI GDGCHC 9 cut(s) 464, 584, 1078, 2455, 2713, 2887, 3227, 3520, 4398
Mly113I GGCGCC 2 cut(s) 264, 2501
MlyI GAGTC 9 cut(s) 106, 352, 436, 826, 1253, 3248, 3659, 3877, 5230
MmeI TCCRAC 4 cut(s) 577, 1702, 2781, 2955
Mph1103I ATGCAT 1 cut(s) 4565
MreI CGCCGGCG 1 cut(s) 266
MroNI GCCGGC 3 cut(s) 266, 686, 940
MroXI GAANNNNTTC 2 cut(s) 1458, 1776
MslI CAYNNNNRTG 6 cut(s) 788, 1862, 2130, 2991, 4597, 5241
MspA1I CMGCKG 7 cut(s) 502, 1751, 2153, 2783, 2957, 3331, 4305
MspCI CTTAAG 1 cut(s) 983
MunI CAATTG 4 cut(s) 1968, 2487, 3357, 4101
Mva1269I GAATGC 6 cut(s) 437, 562, 653, 1182, 4565, 4885
MvnI CGCG 1 cut(s) 522
NaeI GCCGGC 3 cut(s) 268, 688, 942
NarI GGCGCC 2 cut(s) 264, 2501
NciI CCSGG 6 cut(s) 134, 3908, 4271, 4371, 4393, 4775
NdeI CATATG 3 cut(s) 1891, 1980, 2303
NgoMIV GCCGGC 3 cut(s) 266, 686, 940
NmeAIII GCCGAG 2 cut(s) 1513, 3388
NmuCI GTSAC 5 cut(s) 211, 1148, 3318, 3989, 5096
NsiI ATGCAT 1 cut(s) 4565
NspI RCATGY 3 cut(s) 388, 3131, 4193
NspV TTCGAA 1 cut(s) 3675
PaeI GCATGC 1 cut(s) 4193
PaeR7I CTCGAG 1 cut(s) 1077
PagI TCATGA 2 cut(s) 3157, 5236
PciSI GCTCTTC 2 cut(s) 1578, 4481
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 6 cut(s) 437, 562, 653, 1182, 4565, 4885
PdiI GCCGGC 3 cut(s) 268, 688, 942
PdmI GAANNNNTTC 2 cut(s) 1458, 1776
PflFI GACNNNGTC 2 cut(s) 40, 4165
PflMI CCANNNNNTGG 1 cut(s) 3025
PfoI TCCNGGA 1 cut(s) 132
PinAI ACCGGT 1 cut(s) 3993
PleI GAGTC 9 cut(s) 106, 352, 436, 826, 1252, 3247, 3658, 3877, 5229
PluTI GGCGCC 2 cut(s) 267, 2504
PpsI GAGTC 9 cut(s) 106, 352, 436, 826, 1252, 3247, 3658, 3877, 5229
Ppu21I YACGTR 2 cut(s) 2747, 2921
PshBI ATTAAT 1 cut(s) 4059
Psp124BI GAGCTC 3 cut(s) 584, 1078, 2455
Psp1406I AACGTT 1 cut(s) 4822
PspEI GGTNACC 1 cut(s) 3989
PspFI CCCAGC 1 cut(s) 422
PspOMI GGGCCC 1 cut(s) 4394
PspPI GGNCC 9 cut(s) 684, 2163, 2269, 2635, 2809, 4201, 4394, 4395, 5246
PspXI VCTCGAGB 1 cut(s) 1077
PstI CTGCAG 2 cut(s) 1690, 4909
PstNI CAGNNNCTG 6 cut(s) 445, 2786, 2960, 3025, 3405, 4946
PsuI RGATCY 5 cut(s) 1000, 1259, 2211, 2471, 3769
PsyI GACNNNGTC 2 cut(s) 40, 4165
PvuII CAGCTG 6 cut(s) 502, 1751, 2153, 2783, 2957, 3331
RseI CAYNNNNRTG 6 cut(s) 788, 1862, 2130, 2991, 4597, 5241
Rsr2I CGGWCCG 1 cut(s) 2269
RsrII CGGWCCG 1 cut(s) 2269
SacI GAGCTC 3 cut(s) 584, 1078, 2455
SapI GCTCTTC 2 cut(s) 1578, 4481
Sau96I GGNCC 9 cut(s) 684, 2163, 2269, 2635, 2809, 4201, 4394, 4395, 5246
SbfI CCTGCAGG 1 cut(s) 1690
SchI GAGTC 9 cut(s) 106, 352, 436, 826, 1253, 3248, 3659, 3877, 5230
SdaI CCTGCAGG 1 cut(s) 1690
SduI GDGCHC 9 cut(s) 464, 584, 1078, 2455, 2713, 2887, 3227, 3520, 4398
SfaNI GCATC 8 cut(s) 1370, 1825, 2813, 2987, 3074, 3358, 4456, 4572
SfcI CTRYAG 3 cut(s) 1413, 1686, 4905
SfoI GGCGCC 2 cut(s) 265, 2502
Sfr274I CTCGAG 1 cut(s) 1077
SfuI TTCGAA 1 cut(s) 3675
SgrAI CRCCGGYG 1 cut(s) 266
SinI GGWCC 5 cut(s) 2269, 2635, 2809, 4201, 5246
SlaI CTCGAG 1 cut(s) 1077
SmiMI CAYNNNNRTG 6 cut(s) 788, 1862, 2130, 2991, 4597, 5241
SmlI CTYRAG 5 cut(s) 983, 1077, 1086, 2190, 3278
SmoI CTYRAG 5 cut(s) 983, 1077, 1086, 2190, 3278
SphI GCATGC 1 cut(s) 4193
Sse8387I CCTGCAGG 1 cut(s) 1690
SspDI GGCGCC 2 cut(s) 263, 2500
SstI GAGCTC 3 cut(s) 584, 1078, 2455
StyI CCWWGG 1 cut(s) 1285
TaiI ACGT 9 cut(s) 218, 318, 1523, 2749, 2923, 3015, 3746, 4825, 5036
TaqII GACCGA 4 cut(s) 2257, 2797, 3306, 3567
TatI WGTACW 5 cut(s) 2483, 3333, 3753, 3810, 3876
TauI GCSGC 3 cut(s) 188, 619, 3823
TseFI GTSAC 5 cut(s) 211, 1148, 3318, 3989, 5096
Tsp45I GTSAC 5 cut(s) 211, 1148, 3318, 3989, 5096
TspGWI ACGGA 1 cut(s) 251
Tth111I GACNNNGTC 2 cut(s) 40, 4165
Van91I CCANNNNNTGG 1 cut(s) 3025
Vha464I CTTAAG 1 cut(s) 983
VneI GTGCAC 1 cut(s) 3516
VpaK11BI GGWCC 5 cut(s) 2269, 2635, 2809, 4201, 5246
VspI ATTAAT 1 cut(s) 4059
XagI CCTNNNNNAGG 2 cut(s) 469, 4011
XapI RAATTY 9 cut(s) 1635, 1714, 2367, 2492, 3076, 3368, 3788, 5130, 5265
XceI RCATGY 3 cut(s) 388, 3131, 4193
XcmI CCANNNNNNNNNTGG 2 cut(s) 4623, 4967
XhoI CTCGAG 1 cut(s) 1077
XmiI GTMKAC 1 cut(s) 1222
XmnI GAANNNNTTC 2 cut(s) 1458, 1776
ZraI GACGTC 2 cut(s) 216, 3013
Zsp2I ATGCAT 1 cut(s) 4565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.