Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8421553.1

Orthogroup ID

OG0003181

Physical Location & Seq

Genomic Coordinates Forward (+)

380 .. 1295

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8421553.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgggagggactgagaagacgagcaaggtcgttatgacggcgtctgtatcacaatcgccggtcaggtggtggcggacggcgtttctgaccgtcagagacgaaaccctcacgactcctcctcgcactccaatcccggaactcctccacaatttcatcttctcccactcccacactctcctctccgccgcccccgacctccctccgcaggaggtgacgtcagatttgttgttcctaacggaattgatcaccaccaagtctcacggcgccggcgatttgacccctaccttcgctcacacaattcacctgatccatgacgttagccatcgtcttcctctggaagtcaattcagcttcgtggactctcatgcttgacggtttcggcaacatgcttcaattcttcattgcctcttcgtcatttgcgcccagcatggaatgcttacagactctgaggcgtgttatgagcacctaccagaggaagtgttttccggccgatgagattcagctggttaagttccttctgcgcgtaattgagagctgtcattcagagttaagtagctcattgcattcaattcgcaaccagagctctgcttctgaagttggaaagagaaagccatcgccgcaacattgcagcttatgggaagctcagacccttgcattcaatatgcttggagaaacaatctctagggccggctcgttgtttcccgtggatatctggaaatcatctattgaggtagcaatccttttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4042 HEAT

Protein Analysis

248

Amino Acids

27.63

Weight (kDa)

6.59

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38120 AT4G38120 AT4G38120 AT4G38120
fragaria_vesca	FvH4_5g10170 FvH4_5g10170 FvH4_5g10170
malus_domestica	MD06G1127500.v1.1 MD14G1142800.v1.1 MD14G1142900.v1.1 MD14G1143100.v1.1
prunus_persica	Prupe.5G137300_v2.0.a1 Prupe.5G137300_v2.0.a1
pyrus_communis	pycom06g11740 pycom06g11750 pycom06g11760 pycom14g11840 pycom14g11850 pycom14g11860
rosa_chinensis	RchiOBHm_Chr7g0188101 RchiOBHm_Chr7g0188111 RchiOBHm_Chr7g0188121 RchiOBHm_Chr7g0188131
rosa_laevigata	RLG00000004701 RLG00000004726
rosa_multiflora	Rmu_co8421553.1_g000001 Rmu_ssc0000422.1_g000024
rosa_roxburghii	Rroxscaffold_3G00266750
rosa_rugosa	Rorug06G0488300
rosa_samantha	Rh7AG092500 Rh7AG092600 Rh7BG094200 Rh7CG093700 Rh7CG093900 Rh7DG094500 Rh7DG094600
rosa_wichuraiana	Rw7G007990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	263
AccII	CGCG	1 cut(s)	522
AciI	CCGC	5 cut(s)	73, 183, 186, 203, 617
AclWI	GGATC	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	612
AcyI	GRCGYC	3 cut(s)	41, 215, 264
AfiI	CCNNNNNNNGG	2 cut(s)	205, 471
AgsI	TTSAA	3 cut(s)	392, 567, 658
AluBI	AGCT	7 cut(s)	350, 502, 534, 555, 582, 630, 641
AluI	AGCT	7 cut(s)	350, 502, 534, 555, 582, 630, 641
Alw21I	GWGCWC	2 cut(s)	464, 584
Alw26I	GTCTC	2 cut(s)	90, 261
AlwI	GGATC	1 cut(s)	301
AlwNI	CAGNNNCTG	1 cut(s)	445
AoxI	GGCC	2 cut(s)	486, 684
ApeKI	GCWGC	1 cut(s)	627
ArsI	GACNNNNNNTTYG	2 cut(s)	205, 237
AspLEI	GCGC	3 cut(s)	266, 421, 522
AspS9I	GGNCC	1 cut(s)	684
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	3 cut(s)	223, 238, 293
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	584
BbsI	GAAGAC	2 cut(s)	23, 320
Bbv12I	GWGCWC	2 cut(s)	464, 584
BbvI	GCAGC	1 cut(s)	639
BccI	CCATC	2 cut(s)	330, 619
BceAI	ACGGC	3 cut(s)	54, 93, 277
BcgI	CGANNNNNNTGC	2 cut(s)	551, 585
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	90, 261
BfaI	CTAG	1 cut(s)	681
BfoI	RGCGCY	1 cut(s)	267
BisI	GCNGC	3 cut(s)	186, 617, 628
BlsI	GCNGC	3 cut(s)	187, 618, 629
Bme1390I	CCNGG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	684
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	134
BpiI	GAAGAC	2 cut(s)	23, 320
BpuMI	CCSGG	1 cut(s)	134
BsaHI	GRCGYC	3 cut(s)	41, 215, 264
BsaJI	CCNNGG	1 cut(s)	702
BsaXI	ACNNNNNCTCC	4 cut(s)	100, 130, 200, 230
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 471
Bse118I	RCCGGY	3 cut(s)	58, 266, 686
Bse3DI	GCAATG	3 cut(s)	399, 557, 622
BseDI	CCNNGG	1 cut(s)	702
BseLI	CCNNNNNNNGG	2 cut(s)	205, 471
BseMI	GCAATG	3 cut(s)	399, 557, 622
BseMII	CTCAG	2 cut(s)	437, 656
BseRI	GAGGAG	4 cut(s)	105, 108, 131, 167
BseX3I	CGGCCG	1 cut(s)	486
BseXI	GCAGC	1 cut(s)	639
BseYI	CCCAGC	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	522
Bsh1285I	CGRYCG	1 cut(s)	489
BshFI	GGCC	2 cut(s)	488, 686
BshNI	GGYRCC	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	489
BsiHKAI	GWGCWC	2 cut(s)	464, 584
BsiSI	CCGG	5 cut(s)	59, 134, 267, 485, 687
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	205, 471
BsmAI	GTCTC	2 cut(s)	90, 261
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	3 cut(s)	437, 562, 653
BsnI	GGCC	2 cut(s)	488, 686
Bsp1286I	GDGCHC	2 cut(s)	464, 584
Bsp143I	GATC	2 cut(s)	243, 306
BspACI	CCGC	5 cut(s)	73, 183, 186, 203, 617
BspANI	GGCC	2 cut(s)	488, 686
BspCNI	CTCAG	3 cut(s)	4, 438, 655
BspFNI	CGCG	1 cut(s)	522
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	301
BspT107I	GGYRCC	1 cut(s)	263
BsrDI	GCAATG	3 cut(s)	399, 557, 622
BsrFI	RCCGGY	3 cut(s)	58, 266, 686
BssAI	RCCGGY	3 cut(s)	58, 266, 686
BssECI	CCNNGG	1 cut(s)	702
BssMI	GATC	2 cut(s)	243, 306
BssNI	GRCGYC	3 cut(s)	41, 215, 264
Bst4CI	ACNGT	2 cut(s)	91, 374
Bst6I	CTCTTC	1 cut(s)	412
BstACI	GRCGYC	3 cut(s)	41, 215, 264
BstAPI	GCANNNNNTGC	1 cut(s)	432
BstC8I	GCNNGC	2 cut(s)	268, 688
BstDEI	CTNAG	3 cut(s)	12, 446, 642
BstDSI	CCRYGG	1 cut(s)	702
BstENI	CCTNNNNNAGG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	522
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	3 cut(s)	266, 421, 522
BstKTI	GATC	2 cut(s)	246, 309
BstMAI	GTCTC	2 cut(s)	90, 261
BstMBI	GATC	2 cut(s)	243, 306
BstMCI	CGRYCG	1 cut(s)	489
BstMWI	GCNNNNNNNGC	3 cut(s)	432, 579, 616
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	522
BstV1I	GCAGC	1 cut(s)	639
BstV2I	GAAGAC	2 cut(s)	23, 320
BstZI	CGGCCG	1 cut(s)	486
BsuRI	GGCC	2 cut(s)	488, 686
BtgI	CCRYGG	1 cut(s)	702
BtgZI	GCGATG	1 cut(s)	597
Cac8I	GCNNGC	2 cut(s)	268, 688
CaiI	CAGNNNCTG	1 cut(s)	445
CfoI	GCGC	3 cut(s)	266, 421, 522
Cfr10I	RCCGGY	3 cut(s)	58, 266, 686
Cfr13I	GGNCC	1 cut(s)	684
CseI	GACGC	1 cut(s)	30
CviAII	CATG	4 cut(s)	311, 364, 385, 427
DdeI	CTNAG	3 cut(s)	12, 446, 642
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	2 cut(s)	245, 308
DpnII	GATC	2 cut(s)	243, 306
EaeI	YGGCCR	1 cut(s)	486
EagI	CGGCCG	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
EciI	GGCGGA	2 cut(s)	88, 172
Ecl136II	GAGCTC	1 cut(s)	582
EclXI	CGGCCG	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	584
Eco32I	GATATC	1 cut(s)	709
Eco52I	CGGCCG	1 cut(s)	486
Eco53kI	GAGCTC	1 cut(s)	582
Eco57I	CTGAAG	1 cut(s)	612
EcoICRI	GAGCTC	1 cut(s)	582
EcoNI	CCTNNNNNAGG	1 cut(s)	469
EcoRV	GATATC	1 cut(s)	709
EcoT38I	GRGCYC	1 cut(s)	584
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	4 cut(s)	314, 367, 388, 430
FaiI	YATR	9 cut(s)	35, 312, 365, 386, 428, 458, 634, 662, 745
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	4 cut(s)	310, 363, 384, 426
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	3 cut(s)	186, 617, 628
FriOI	GRGCYC	1 cut(s)	584
Fsp4HI	GCNGC	3 cut(s)	186, 617, 628
FspBI	CTAG	1 cut(s)	681
GlaI	GCGC	3 cut(s)	265, 420, 521
GluI	GCNGC	3 cut(s)	186, 617, 628
GsaI	CCCAGC	1 cut(s)	426
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	488, 686
HapII	CCGG	5 cut(s)	59, 134, 267, 485, 687
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	3 cut(s)	266, 421, 522
Hin1I	GRCGYC	3 cut(s)	41, 215, 264
Hin1II	CATG	4 cut(s)	314, 367, 388, 430
Hin6I	GCGC	3 cut(s)	264, 419, 520
HinP1I	GCGC	3 cut(s)	264, 419, 520
HinfI	GANTC	4 cut(s)	112, 358, 442, 496
HpaII	CCGG	5 cut(s)	59, 134, 267, 485, 687
HphI	GGTGA	3 cut(s)	223, 238, 293
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	7 cut(s)	87, 95, 220, 447, 544, 592, 645
Hpy188III	TCNNGA	3 cut(s)	109, 335, 712
Hpy8I	GTNNAC	1 cut(s)	357
HpyAV	CCTTC	2 cut(s)	295, 524
HpyCH4III	ACNGT	2 cut(s)	91, 374
HpyCH4IV	ACGT	2 cut(s)	215, 315
HpyCH4V	TGCA	3 cut(s)	562, 627, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	432, 579, 616
HpyF3I	CTNAG	3 cut(s)	12, 446, 642
HpySE526I	ACGT	2 cut(s)	215, 315
Hsp92I	GRCGYC	3 cut(s)	41, 215, 264
Hsp92II	CATG	4 cut(s)	314, 367, 388, 430
HspAI	GCGC	3 cut(s)	264, 419, 520
KasI	GGCGCC	1 cut(s)	263
KroI	GCCGGC	2 cut(s)	266, 686
KroNI	GCCGGC	2 cut(s)	268, 688
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	243, 306
Lsp1109I	GCAGC	1 cut(s)	639
MaeI	CTAG	1 cut(s)	681
MaeII	ACGT	2 cut(s)	215, 315
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	245, 308
MboI	GATC	2 cut(s)	243, 306
MboII	GAAGA	5 cut(s)	28, 148, 320, 388, 399
MhlI	GDGCHC	2 cut(s)	464, 584
MluCI	AATT	7 cut(s)	148, 239, 297, 343, 392, 525, 567
Mly113I	GGCGCC	1 cut(s)	264
MlyI	GAGTC	3 cut(s)	106, 352, 436
MmeI	TCCRAC	1 cut(s)	577
MreI	CGCCGGCG	1 cut(s)	266
MroNI	GCCGGC	2 cut(s)	266, 686
MseI	TTAA	2 cut(s)	507, 548
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	5 cut(s)	59, 134, 267, 485, 687
MspR9I	CCNGG	1 cut(s)	134
Mva1269I	GAATGC	3 cut(s)	437, 562, 653
MvnI	CGCG	1 cut(s)	522
MwoI	GCNNNNNNNGC	3 cut(s)	432, 579, 616
NaeI	GCCGGC	2 cut(s)	268, 688
NarI	GGCGCC	1 cut(s)	264
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	2 cut(s)	243, 306
NgoMIV	GCCGGC	2 cut(s)	266, 686
NlaIII	CATG	4 cut(s)	314, 367, 388, 430
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	3 cut(s)	437, 562, 653
PdiI	GCCGGC	2 cut(s)	268, 688
PfeI	GAWTC	1 cut(s)	496
PflFI	GACNNNGTC	1 cut(s)	40
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	187, 618, 629
PleI	GAGTC	3 cut(s)	106, 352, 436
PluTI	GGCGCC	1 cut(s)	267
PpsI	GAGTC	3 cut(s)	106, 352, 436
Psp124BI	GAGCTC	1 cut(s)	584
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	684
PstNI	CAGNNNCTG	1 cut(s)	445
PsyI	GACNNNGTC	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	502
SacI	GAGCTC	1 cut(s)	584
SaqAI	TTAA	2 cut(s)	507, 548
SatI	GCNGC	3 cut(s)	186, 617, 628
Sau3AI	GATC	2 cut(s)	243, 306
Sau96I	GGNCC	1 cut(s)	684
SchI	GAGTC	3 cut(s)	106, 352, 436
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	2 cut(s)	464, 584
SfoI	GGCGCC	1 cut(s)	265
SgrAI	CRCCGGYG	1 cut(s)	266
Sse9I	AATT	7 cut(s)	148, 239, 297, 343, 392, 525, 567
SsiI	CCGC	5 cut(s)	73, 183, 186, 203, 617
SspDI	GGCGCC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	681
SstI	GAGCTC	1 cut(s)	584
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	91, 374
TaiI	ACGT	2 cut(s)	218, 318
TasI	AATT	7 cut(s)	148, 239, 297, 343, 392, 525, 567
TauI	GCSGC	2 cut(s)	188, 619
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	2 cut(s)	507, 548
Tru9I	TTAA	2 cut(s)	507, 548
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	627
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	142, 388
TspGWI	ACGGA	1 cut(s)	251
Tth111I	GACNNNGTC	1 cut(s)	40
XagI	CCTNNNNNAGG	1 cut(s)	469
XceI	RCATGY	1 cut(s)	388
XspI	CTAG	1 cut(s)	681
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.