Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Reverse (-)

767435 .. 768917

Gene Structure 1483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCTACAGCTACGTATCCGCCTCCTCCACCATATTACAGACTCTACAAGGATTACTCAGAAAACCCTAATTCTGCTCCTGAACCTCCTCCTCCGATTGAAGGCACCTACGTCTGTTTTGGAGGCAACTATACTACTGAAGATGTTCTTCCAAGCTTAGAAGAACAAGGAGTGCCTCAACTTTATCCCAAAGATTCTAATCTTGATTACAAGAATGAACTCAGGTCACTGAATAGAGAACTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGACAGACCTTCTCAATATGCGAAGAGGATTGGTGAAATTTCTTCTATCTTCAAGAATTTGCATCACCTTCTCAATTCCTTGAGGCCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACAGAGGAAACAAGCTGTGGAAGACATTAAAAGAAGAAGAGAAGAAGCACAGCGACTTCTAAAGGATGCTTACCTCACTTTAGATGGTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

168

Amino Acids

19.42

Weight (kDa)

5.96

Isoelectric Point (pI)

73.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	4 - 158	2.9e-46	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AciI	CCGC	1 cut(s)	20
AcsI	RAATTY	3 cut(s)	315, 334, 408
AcuI	CTGAAG	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	101, 331, 407, 413
AluBI	AGCT	4 cut(s)	11, 156, 262, 428
AluI	AGCT	4 cut(s)	11, 156, 262, 428
AoxI	GGCC	1 cut(s)	362
ApoI	RAATTY	3 cut(s)	315, 334, 408
Asp700I	GAANNNNTTC	1 cut(s)	144
AsuHPI	GGTGA	3 cut(s)	323, 335, 359
BanI	GGYRCC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	441
BccI	CCATC	1 cut(s)	491
BciVI	GTATCC	1 cut(s)	27
BfmI	CTRYAG	2 cut(s)	6, 242
BfuI	GTATCC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	106
BmsI	GCATC	2 cut(s)	349, 469
BpiI	GAAGAC	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	379
BsaAI	YACGTR	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse8I	GATNNNNATC	1 cut(s)	198
BseGI	GGATG	1 cut(s)	484
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	2 cut(s)	72, 235
BseRI	GAGGAG	3 cut(s)	15, 78, 81
BshFI	GGCC	1 cut(s)	364
BshNI	GGYRCC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	101
BsnI	GGCC	1 cut(s)	364
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	2 cut(s)	71, 234
BspLI	GGNNCC	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	2 cut(s)	296, 445
BstBAI	YACGTR	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	3 cut(s)	58, 157, 221
BstF5I	GGATG	1 cut(s)	484
BstSFI	CTRYAG	2 cut(s)	6, 242
BstSNI	TACGTA	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	441
BsuI	GTATCC	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	264
CviJI	RGCY	6 cut(s)	5, 11, 156, 262, 364, 428
CviKI_1	RGCY	6 cut(s)	5, 11, 156, 262, 364, 428
DdeI	CTNAG	3 cut(s)	58, 157, 221
Eam1104I	CTCTTC	2 cut(s)	296, 445
EarI	CTCTTC	2 cut(s)	296, 445
EciI	GGCGGA	1 cut(s)	9
Eco105I	TACGTA	1 cut(s)	15
Eco147I	AGGCCT	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	159
FaiI	YATR	6 cut(s)	34, 132, 252, 254, 297, 398
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FokI	GGATG	1 cut(s)	491
HaeIII	GGCC	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	2 cut(s)	42, 194
HphI	GGTGA	3 cut(s)	323, 335, 359
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	61, 96
Hpy188III	TCNNGA	3 cut(s)	80, 203, 331
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	3 cut(s)	95, 297, 356
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4IV	ACGT	2 cut(s)	14, 111
HpyCH4V	TGCA	1 cut(s)	340
HpyF3I	CTNAG	3 cut(s)	58, 157, 221
HpySE526I	ACGT	2 cut(s)	14, 111
LmnI	GCTCC	2 cut(s)	82, 259
LpnPI	CCDG	2 cut(s)	93, 208
LweI	GCATC	2 cut(s)	349, 469
MaeII	ACGT	2 cut(s)	14, 111
MaeIII	GTNAC	2 cut(s)	225, 246
MluCI	AATT	5 cut(s)	70, 315, 334, 352, 408
MlyI	GAGTC	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	1 cut(s)	441
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	225
PceI	AGGCCT	1 cut(s)	364
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	194
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
Ppu21I	YACGTR	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	106
PsrI	GAACNNNNNNTAC	2 cut(s)	231, 263
SaqAI	TTAA	1 cut(s)	441
SchI	GAGTC	1 cut(s)	36
SfaNI	GCATC	2 cut(s)	349, 469
SfcI	CTRYAG	2 cut(s)	6, 242
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
SnaBI	TACGTA	1 cut(s)	15
Sse9I	AATT	5 cut(s)	70, 315, 334, 352, 408
SseBI	AGGCCT	1 cut(s)	364
SsiI	CCGC	1 cut(s)	20
StuI	AGGCCT	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	246
TaiI	ACGT	2 cut(s)	17, 114
TasI	AATT	5 cut(s)	70, 315, 334, 352, 408
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	234
XapI	RAATTY	3 cut(s)	315, 334, 408
XmnI	GAANNNNTTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.