Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Forward (+)

22128315 .. 22132317

Gene Structure 4003 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG131400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCAATTTCAGATTTACCAAATTGCTGGGGGGGCGCTCTTTGTCTCTATTTCTGTAAGCAAGCATCAGGTTTACCTATATTCTCTGTTCAGGTTTGGCAGCAAGGTTCTTGAAATGGCTACAGCGACCTACCCACCTCCACCACCGTATTATAAGCTATACAAAGATTACTTGCAAGATCCCAAATCCGCTCCTGAGCCGCCGCCACCAATTGAAGGGACATACATTTGCTATGGTGCTAATTACACCACAGATGACGTGCTTCCAAGCTTGGAAGAACAGGGAGTGCGTCAACTGTACCCAAAAGGCCCAAATATTGATTTTAAGAAGGAACTGAGGTCCCTTAACAGAGAATTGCAGCTGCACATTTTGGAACTCGCTGATATTCTCGTGGAGAGACCATCACAATATGCAAGGAGAGTGGAAGAAATATCTCTTATATTCAAGAACTTGCATCATCTTCTGAACTCATTGCGGCCCCATCAGGCTAGGGCAACACTAATTCACATTCTAGAACTTCAGATTAAACGACGTAAACAAGCTGTTGAGGATATAAAGAGGAGGAGAGAAGAAGCACAGGCACTTCTGAAGGAGTCCCTTGAATCGTTGGAGGACACTGGTGCATCTCTTATGTTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

213

Amino Acids

24.61

Weight (kDa)

8.49

Isoelectric Point (pI)

64.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	42 - 196	1.9e-45	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	153
AccBSI	CCGCTC	1 cut(s)	191
AciI	CCGC	4 cut(s)	189, 200, 203, 475
AclWI	GGATC	1 cut(s)	173
AcuI	CTGAAG	2 cut(s)	503, 608
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	5 cut(s)	113, 215, 445, 602, 637
AjiI	CACGTC	1 cut(s)	259
AluBI	AGCT	4 cut(s)	157, 270, 361, 542
AluI	AGCT	4 cut(s)	157, 270, 361, 542
Alw26I	GTCTC	2 cut(s)	49, 391
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	2 cut(s)	307, 476
ApeKI	GCWGC	3 cut(s)	99, 358, 361
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	3 cut(s)	308, 339, 477
AvaII	GGWCC	1 cut(s)	339
BauI	CACGAG	1 cut(s)	389
BbvI	GCAGC	3 cut(s)	111, 348, 370
BccI	CCATC	2 cut(s)	409, 489
BcoDI	GTCTC	2 cut(s)	49, 391
BfaI	CTAG	2 cut(s)	489, 512
BfmI	CTRYAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	6 cut(s)	100, 200, 203, 359, 362, 476
BlsI	GCNGC	6 cut(s)	101, 201, 204, 360, 363, 477
Bme18I	GGWCC	1 cut(s)	339
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	3 cut(s)	308, 339, 477
BmiI	GGNNCC	2 cut(s)	341, 479
BmsI	GCATC	3 cut(s)	73, 463, 632
Bpu10I	CCTNAGC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	470
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	2 cut(s)	186, 326
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	2 cut(s)	574, 577
BseXI	GCAGC	3 cut(s)	111, 348, 370
BseYI	CCCAGC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	2 cut(s)	309, 478
BslFI	GGGAC	3 cut(s)	232, 325, 580
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	2 cut(s)	49, 391
BsmFI	GGGAC	3 cut(s)	232, 325, 580
BsnI	GGCC	2 cut(s)	309, 478
Bso31I	GGTCTC	1 cut(s)	391
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	4 cut(s)	189, 200, 203, 475
BspANI	GGCC	2 cut(s)	309, 478
BspCNI	CTCAG	2 cut(s)	187, 327
BspLI	GGNNCC	2 cut(s)	341, 479
BspPI	GGATC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	391
BsrBI	CCGCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	622
BssMI	GATC	1 cut(s)	178
BssSI	CACGAG	1 cut(s)	389
Bst2BI	CACGAG	1 cut(s)	389
Bst4CI	ACNGT	2 cut(s)	147, 297
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	195, 335
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	1 cut(s)	181
BstMAI	GTCTC	2 cut(s)	49, 391
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	111, 348, 370
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	309, 478
BtrI	CACGTC	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	615
Cac8I	GCNNGC	1 cut(s)	62
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	308, 339, 477
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	298
CspCI	CAANNNNNGTGG	2 cut(s)	402, 437
CviJI	RGCY	9 cut(s)	119, 157, 199, 270, 309, 361, 478, 488, 542
CviKI_1	RGCY	9 cut(s)	119, 157, 199, 270, 309, 361, 478, 488, 542
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	195, 335
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	339
Eco57I	CTGAAG	2 cut(s)	503, 608
EcoO109I	RGGNCCY	1 cut(s)	339
FaiI	YATR	9 cut(s)	79, 153, 160, 223, 234, 411, 440, 554, 632
FaqI	GGGAC	3 cut(s)	232, 325, 580
Fnu4HI	GCNGC	6 cut(s)	100, 200, 203, 359, 362, 476
Fsp4HI	GCNGC	6 cut(s)	100, 200, 203, 359, 362, 476
FspBI	CTAG	2 cut(s)	489, 512
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	6 cut(s)	100, 200, 203, 359, 362, 476
GsaI	CCCAGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	309, 478
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	37
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HindIII	AAGCTT	1 cut(s)	268
HinfI	GANTC	2 cut(s)	593, 602
Hpy166II	GTNNAC	3 cut(s)	73, 293, 536
Hpy188I	TCNGA	4 cut(s)	12, 465, 522, 588
Hpy188III	TCNNGA	4 cut(s)	110, 194, 445, 512
Hpy8I	GTNNAC	3 cut(s)	73, 293, 536
Hpy99I	CGWCG	1 cut(s)	534
HpyAV	CCTTC	3 cut(s)	209, 322, 583
HpyCH4III	ACNGT	2 cut(s)	147, 297
HpyCH4IV	ACGT	2 cut(s)	258, 532
HpyCH4V	TGCA	7 cut(s)	4, 175, 358, 364, 413, 454, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	2 cut(s)	195, 335
HpySE526I	ACGT	2 cut(s)	258, 532
HspAI	GCGC	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	8 cut(s)	12, 53, 76, 207, 266, 470, 563, 603
Lsp1109I	GCAGC	3 cut(s)	111, 348, 370
LweI	GCATC	3 cut(s)	73, 463, 632
MaeI	CTAG	2 cut(s)	489, 512
MaeII	ACGT	2 cut(s)	258, 532
MalI	GATC	1 cut(s)	180
MbiI	CCGCTC	1 cut(s)	191
MboI	GATC	1 cut(s)	178
MboII	GAAGA	4 cut(s)	287, 437, 452, 581
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	6 cut(s)	5, 21, 210, 241, 353, 501
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	6 cut(s)	147, 330, 541, 552, 555, 604
MseI	TTAA	3 cut(s)	324, 345, 525
MspA1I	CMGCKG	1 cut(s)	361
MunI	CAATTG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	1 cut(s)	178
NlaIV	GGNNCC	2 cut(s)	341, 479
PfeI	GAWTC	1 cut(s)	602
PkrI	GCNGC	6 cut(s)	101, 201, 204, 360, 363, 477
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
PpuMI	RGGWCCY	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	341, 479
PspPI	GGNCC	3 cut(s)	308, 339, 477
PspPPI	RGGWCCY	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	361
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	3 cut(s)	324, 345, 525
SatI	GCNGC	6 cut(s)	100, 200, 203, 359, 362, 476
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	3 cut(s)	308, 339, 477
SchI	GAGTC	1 cut(s)	602
SfaNI	GCATC	3 cut(s)	73, 463, 632
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	339
Sse9I	AATT	6 cut(s)	5, 21, 210, 241, 353, 501
SsiI	CCGC	4 cut(s)	189, 200, 203, 475
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	2 cut(s)	489, 512
TaaI	ACNGT	2 cut(s)	147, 297
TaiI	ACGT	2 cut(s)	261, 535
TasI	AATT	6 cut(s)	5, 21, 210, 241, 353, 501
TauI	GCSGC	3 cut(s)	202, 205, 478
TfiI	GAWTC	1 cut(s)	602
Tru1I	TTAA	3 cut(s)	324, 345, 525
Tru9I	TTAA	3 cut(s)	324, 345, 525
TscAI	CASTG	1 cut(s)	622
TseI	GCWGC	3 cut(s)	99, 358, 361
TspRI	CASTG	1 cut(s)	622
VpaK11BI	GGWCC	1 cut(s)	339
XbaI	TCTAGA	1 cut(s)	511
XspI	CTAG	2 cut(s)	489, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.