Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Forward (+)

23705048 .. 23715056

Gene Structure 10009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG249000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGAGTACGTATTCAAGAAAGTTTAGGTGCACGTGTTGGGAAGCTATCTCATGATAAGAAGAAAGCAATTGAAGAAGAAGAAGAACTTTTGAGACGGCTGATGTGCTTCCAAGCTTGGAAGAACAGGAAGTGCGTCAACTGTACCCAAAAGGCCCAAATATTGAAGGAATTGAGGTCCCTTAACAGAGAATTGCAGCTGCACATTTTTGAACTTGCTGATATTCTTGTGGAGAGACCATCACAATATGCAAGGAGAGTGGAAGAAATATCTCTTATATTCCAGAACTTGCATCATCGTCTGAACTCATTGCGGCCCCATCAGGCTAGGGTAACACTAATTCACATTCTAGAACTTCAGACAAAACGACATAAACAAGCTGTTGAGGATATACAGAGGTTAATAGGTAAGACGCATAGCTATGTGTTGGATATAAGCTGCGGTTCATTCCGTAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

153

Amino Acids

18.15

Weight (kDa)

9.91

Isoelectric Point (pI)

66.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	47 - 138	6.5e-24	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	313, 441
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	341
AcvI	CACGTG	1 cut(s)	35
AfaI	GTAC	2 cut(s)	9, 145
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	4 cut(s)	17, 74, 166, 212
AluBI	AGCT	6 cut(s)	46, 116, 199, 380, 420, 438
AluI	AGCT	6 cut(s)	46, 116, 199, 380, 420, 438
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	2 cut(s)	88, 229
Alw44I	GTGCAC	1 cut(s)	30
AoxI	GGCC	2 cut(s)	153, 314
ApaLI	GTGCAC	1 cut(s)	30
ApeKI	GCWGC	3 cut(s)	196, 199, 438
ApoI	RAATTY	1 cut(s)	456
AspS9I	GGNCC	3 cut(s)	154, 177, 315
AvaII	GGWCC	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	34
BbrPI	CACGTG	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	3 cut(s)	186, 208, 425
BccI	CCATC	2 cut(s)	247, 327
BceAI	ACGGC	1 cut(s)	113
BcoDI	GTCTC	2 cut(s)	88, 229
BfaI	CTAG	2 cut(s)	327, 350
BisI	GCNGC	4 cut(s)	197, 200, 314, 439
BlsI	GCNGC	4 cut(s)	198, 201, 315, 440
Bme18I	GGWCC	1 cut(s)	177
BmgT120I	GGNCC	3 cut(s)	154, 177, 315
BmiI	GGNNCC	2 cut(s)	179, 317
BmsI	GCATC	1 cut(s)	301
BsaAI	YACGTR	2 cut(s)	11, 35
BsaI	GGTCTC	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	3 cut(s)	186, 208, 425
BsgI	GTGCAG	1 cut(s)	185
BshFI	GGCC	2 cut(s)	155, 316
BsiHKAI	GWGCWC	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	163
BsmAI	GTCTC	2 cut(s)	88, 229
BsmBI	CGTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	155, 316
Bso31I	GGTCTC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	34
BspACI	CCGC	2 cut(s)	313, 441
BspANI	GGCC	2 cut(s)	155, 316
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	179, 317
BspTNI	GGTCTC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	143
BstBAI	YACGTR	2 cut(s)	11, 35
BstMAI	GTCTC	2 cut(s)	88, 229
BstSLI	GKGCMC	1 cut(s)	34
BstSNI	TACGTA	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	186, 208, 425
BsuRI	GGCC	2 cut(s)	155, 316
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	3 cut(s)	154, 177, 315
CseI	GACGC	2 cut(s)	124, 421
Csp6I	GTAC	2 cut(s)	8, 144
CspCI	CAANNNNNGTGG	2 cut(s)	240, 275
CviAII	CATG	1 cut(s)	53
CviQI	GTAC	2 cut(s)	8, 144
Eco105I	TACGTA	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	341
Eco72I	CACGTG	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	1 cut(s)	56
FaiI	YATR	8 cut(s)	54, 249, 278, 372, 392, 417, 423, 434
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	1 cut(s)	52
Fnu4HI	GCNGC	4 cut(s)	197, 200, 314, 439
Fsp4HI	GCNGC	4 cut(s)	197, 200, 314, 439
FspBI	CTAG	2 cut(s)	327, 350
GluI	GCNGC	4 cut(s)	197, 200, 314, 439
HaeIII	GGCC	2 cut(s)	155, 316
HgaI	GACGC	2 cut(s)	124, 421
Hin1II	CATG	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	114
Hpy166II	GTNNAC	2 cut(s)	32, 139
Hpy188I	TCNGA	2 cut(s)	303, 360
Hpy188III	TCNNGA	4 cut(s)	17, 53, 283, 350
Hpy8I	GTNNAC	2 cut(s)	32, 139
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	2 cut(s)	10, 34
HpyCH4V	TGCA	5 cut(s)	32, 196, 202, 251, 292
HpySE526I	ACGT	2 cut(s)	10, 34
Hsp92II	CATG	1 cut(s)	56
LpnPI	CCDG	3 cut(s)	112, 296, 308
Lsp1109I	GCAGC	3 cut(s)	186, 208, 425
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	327, 350
MaeII	ACGT	2 cut(s)	10, 34
MaeIII	GTNAC	1 cut(s)	331
MboII	GAAGA	7 cut(s)	73, 86, 89, 92, 95, 133, 275
MfeI	CAATTG	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	5 cut(s)	69, 170, 191, 339, 456
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	3 cut(s)	168, 379, 390
MseI	TTAA	2 cut(s)	183, 401
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	199
MunI	CAATTG	1 cut(s)	69
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	2 cut(s)	179, 317
PagI	TCATGA	1 cut(s)	52
PkrI	GCNGC	4 cut(s)	198, 201, 315, 440
PmaCI	CACGTG	1 cut(s)	35
PmlI	CACGTG	1 cut(s)	35
Ppu21I	YACGTR	2 cut(s)	11, 35
PpuMI	RGGWCCY	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	177
PspCI	CACGTG	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	179, 317
PspPI	GGNCC	3 cut(s)	154, 177, 315
PspPPI	RGGWCCY	1 cut(s)	177
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	2 cut(s)	9, 145
RsaNI	GTAC	2 cut(s)	8, 144
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	2 cut(s)	183, 401
SatI	GCNGC	4 cut(s)	197, 200, 314, 439
Sau96I	GGNCC	3 cut(s)	154, 177, 315
SduI	GDGCHC	1 cut(s)	34
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	420
SnaBI	TACGTA	1 cut(s)	11
Sse9I	AATT	5 cut(s)	69, 170, 191, 339, 456
SsiI	CCGC	2 cut(s)	313, 441
SspI	AATATT	1 cut(s)	162
SspMI	CTAG	2 cut(s)	327, 350
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	2 cut(s)	13, 37
TasI	AATT	5 cut(s)	69, 170, 191, 339, 456
TauI	GCSGC	1 cut(s)	316
Tru1I	TTAA	2 cut(s)	183, 401
Tru9I	TTAA	2 cut(s)	183, 401
TseI	GCWGC	3 cut(s)	196, 199, 438
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	440
VneI	GTGCAC	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	177
XapI	RAATTY	1 cut(s)	456
XbaI	TCTAGA	1 cut(s)	349
XspI	CTAG	2 cut(s)	327, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.