Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Reverse (-)

39154097 .. 39158921

Gene Structure 4825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008785

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGATTTCAAATCAGGTGAACAAATTGCTGGCTTACCTATATTCTCTGTTCAGGTTTGGCAACAAGGTGCTTGAAATGGCTACAGCGACCTACCCACCACCACCACCATATTATAAGCTATACAAAGATTACTTGCAAGATCCCAAATCTGCTCCTGAGCCGCCGCCACCAATTGAAGGGACATACATTTGCTATGGTGCTAATTACACTACAGATGACGTGCTTCCAAGCTTGGAAGAACAGGGAGTGCGTCAACTGTACCCAAAAGGCCCAAATATTGATTTTAAGAAGGAACTAAGGTCCCTTAACAGAGAATTGCAGCTGCACATTTTGGAACTCGCTGATATTCTCGTGGAGAGACCATCACAATATGCAAGGAGAGTGGAAGAAATATCTCTTATATTCAAGAACTTGCATCATCTTCTGAACTCATTGCGGCCCCATCAGGCTAGGGCAACACTAATTCACATTCTAGAACTTCAGATAAAACGACGTAAACAAGCTGTTGAGGATATAAAGAGGAGGAGAGAAGAAGCACGGGCACTTCTAAAGGAGTCCCTTGAATCGTTGGAGGACACTGGTGCATCTCTTATGCTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

201

Amino Acids

23.24

Weight (kDa)

8.82

Isoelectric Point (pI)

70.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	29 - 183	8.8e-46	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AciI	CCGC	3 cut(s)	161, 164, 436
AclWI	GGATC	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	464
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	5 cut(s)	9, 74, 176, 406, 563
AjiI	CACGTC	1 cut(s)	220
AluBI	AGCT	4 cut(s)	118, 231, 322, 503
AluI	AGCT	4 cut(s)	118, 231, 322, 503
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	2 cut(s)	268, 437
ApeKI	GCWGC	2 cut(s)	319, 322
AspS9I	GGNCC	3 cut(s)	269, 300, 438
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	544
BauI	CACGAG	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	309, 331
BccI	CCATC	2 cut(s)	370, 450
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	2 cut(s)	450, 473
BfmI	CTRYAG	2 cut(s)	81, 210
BisI	GCNGC	5 cut(s)	161, 164, 320, 323, 437
BlsI	GCNGC	5 cut(s)	162, 165, 321, 324, 438
Bme18I	GGWCC	1 cut(s)	300
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	3 cut(s)	269, 300, 438
BmiI	GGNNCC	2 cut(s)	302, 440
BmsI	GCATC	2 cut(s)	424, 593
Bpu10I	CCTNAGC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	583
Bse3DI	GCAATG	1 cut(s)	431
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	431
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	583
BseRI	GAGGAG	2 cut(s)	535, 538
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	2 cut(s)	309, 331
BsgI	GTGCAG	1 cut(s)	308
BshFI	GGCC	2 cut(s)	270, 439
BslFI	GGGAC	3 cut(s)	193, 286, 541
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	3 cut(s)	193, 286, 541
BsnI	GGCC	2 cut(s)	270, 439
Bso31I	GGTCTC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	3 cut(s)	161, 164, 436
BspANI	GGCC	2 cut(s)	270, 439
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	302, 440
BspPI	GGATC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	583
BssMI	GATC	1 cut(s)	139
BssSI	CACGAG	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	156, 296
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	139
BstSFI	CTRYAG	2 cut(s)	81, 210
BstSLI	GKGCMC	1 cut(s)	544
BstV1I	GCAGC	2 cut(s)	309, 331
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	270, 439
BtrI	CACGTC	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	576
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	3 cut(s)	269, 300, 438
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	259
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	156, 296
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eco31I	GGTCTC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	300
FaqI	GGGAC	3 cut(s)	193, 286, 541
Fnu4HI	GCNGC	5 cut(s)	161, 164, 320, 323, 437
Fsp4HI	GCNGC	5 cut(s)	161, 164, 320, 323, 437
FspBI	CTAG	2 cut(s)	450, 473
GluI	GCNGC	5 cut(s)	161, 164, 320, 323, 437
HaeIII	GGCC	2 cut(s)	270, 439
HgaI	GACGC	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	254
HindII	GTYRAC	1 cut(s)	254
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	2 cut(s)	554, 563
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	3 cut(s)	19, 254, 497
Hpy188I	TCNGA	2 cut(s)	426, 483
Hpy188III	TCNNGA	3 cut(s)	155, 406, 473
Hpy8I	GTNNAC	3 cut(s)	19, 254, 497
Hpy99I	CGWCG	1 cut(s)	495
HpyAV	CCTTC	2 cut(s)	170, 283
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4IV	ACGT	2 cut(s)	219, 493
HpyCH4V	TGCA	6 cut(s)	136, 319, 325, 374, 415, 584
HpyF3I	CTNAG	2 cut(s)	156, 296
HpySE526I	ACGT	2 cut(s)	219, 493
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	6 cut(s)	14, 37, 168, 227, 431, 564
Lsp1109I	GCAGC	2 cut(s)	309, 331
LweI	GCATC	2 cut(s)	424, 593
MaeI	CTAG	2 cut(s)	450, 473
MaeII	ACGT	2 cut(s)	219, 493
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	4 cut(s)	248, 398, 413, 542
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	5 cut(s)	23, 171, 202, 314, 462
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	1 cut(s)	549
MnlI	CCTC	4 cut(s)	502, 513, 516, 565
MseI	TTAA	2 cut(s)	285, 306
MspA1I	CMGCKG	1 cut(s)	322
MunI	CAATTG	1 cut(s)	171
NdeII	GATC	1 cut(s)	139
NlaIV	GGNNCC	2 cut(s)	302, 440
PfeI	GAWTC	1 cut(s)	563
PkrI	GCNGC	5 cut(s)	162, 165, 321, 324, 438
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PpuMI	RGGWCCY	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	302, 440
PspPI	GGNCC	3 cut(s)	269, 300, 438
PspPPI	RGGWCCY	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	285, 306
SatI	GCNGC	5 cut(s)	161, 164, 320, 323, 437
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	3 cut(s)	269, 300, 438
SchI	GAGTC	1 cut(s)	563
SduI	GDGCHC	1 cut(s)	544
SfaNI	GCATC	2 cut(s)	424, 593
SfcI	CTRYAG	2 cut(s)	81, 210
SinI	GGWCC	1 cut(s)	300
Sse9I	AATT	5 cut(s)	23, 171, 202, 314, 462
SsiI	CCGC	3 cut(s)	161, 164, 436
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	2 cut(s)	450, 473
TaaI	ACNGT	1 cut(s)	258
TaiI	ACGT	2 cut(s)	222, 496
TasI	AATT	5 cut(s)	23, 171, 202, 314, 462
TauI	GCSGC	3 cut(s)	163, 166, 439
TfiI	GAWTC	1 cut(s)	563
Tru1I	TTAA	2 cut(s)	285, 306
Tru9I	TTAA	2 cut(s)	285, 306
TscAI	CASTG	1 cut(s)	583
TseI	GCWGC	2 cut(s)	319, 322
TspRI	CASTG	1 cut(s)	583
VpaK11BI	GGWCC	1 cut(s)	300
XbaI	TCTAGA	1 cut(s)	472
XspI	CTAG	2 cut(s)	450, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.