Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Forward (+)

15907946 .. 15910518

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G181600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGATCCCAAATCAGCTCCGGAGCTGCCCCCTCCGATTGAAGGGACATACATTTGCTGTGGTGGCAATTACACTACTGATGACATTCTTCCGAGCTTGGAAGATCAGGGAGTGCGTCAACTGTATCCAAAAGGCCCAAACATTGCTATGCCTCCCTCCGTTCTAGTTTTAATTATTTATTTTAAGAAGGAACTGAGGTCACTTAACAGAGAATTGCAGCTGCACATTTTGGAGCTGGCTGATATTCTTGTAGAGAGACCATCACAGTATGCGAGGAGTGTGGAAGATATATCTCTTATCTTCAAGAACTTGCATCATCTTCTCAACTCATTGTGCCCCCATCAAGCTAGGGCAACGTTAATTCACATTCTAGAACTTCAGATACAACGTCGTAAACAAGCTGTGGAGGATATAAAGAGGAGGAGAGAAGAAGCACAGAGACTTCTCAAGGACTCTATTGGAACGATGGAGGACACCGGCGCATCTTTTGTGCTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

167

Amino Acids

18.92

Weight (kDa)

6.52

Isoelectric Point (pI)

70.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	19
AclI	AACGTT	1 cut(s)	356
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	41, 304
AluBI	AGCT	7 cut(s)	17, 25, 96, 220, 235, 347, 401
AluI	AGCT	7 cut(s)	17, 25, 96, 220, 235, 347, 401
Alw26I	GTCTC	2 cut(s)	250, 433
AlwI	GGATC	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	3 cut(s)	25, 217, 220
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	3 cut(s)	12, 207, 229
BccI	CCATC	3 cut(s)	268, 348, 460
BciVI	GTATCC	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	250, 433
BfaI	CTAG	3 cut(s)	164, 348, 371
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	3 cut(s)	26, 218, 221
BlsI	GCNGC	3 cut(s)	27, 219, 222
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	2 cut(s)	322, 491
BpuEI	CTTGAG	1 cut(s)	431
BsaI	GGTCTC	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse118I	RCCGGY	1 cut(s)	476
Bse3DI	GCAATG	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	185
BseRI	GAGGAG	3 cut(s)	289, 433, 436
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	3 cut(s)	12, 207, 229
BsgI	GTGCAG	1 cut(s)	206
BshFI	GGCC	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	20, 477
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	2 cut(s)	250, 433
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	4, 103
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	186
BspEI	TCCGGA	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	476
BssAI	RCCGGY	1 cut(s)	476
BssMI	GATC	2 cut(s)	4, 103
Bst4CI	ACNGT	2 cut(s)	123, 267
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	2 cut(s)	7, 106
BstMAI	GTCTC	2 cut(s)	250, 433
BstMBI	GATC	2 cut(s)	4, 103
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	3 cut(s)	12, 207, 229
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	1 cut(s)	482
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	1 cut(s)	104
CviJI	RGCY	9 cut(s)	17, 25, 96, 135, 220, 235, 239, 347, 401
CviKI_1	RGCY	9 cut(s)	17, 25, 96, 135, 220, 235, 239, 347, 401
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	2 cut(s)	6, 105
DpnII	GATC	2 cut(s)	4, 103
Eco31I	GGTCTC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	362
FaiI	YATR	5 cut(s)	49, 149, 270, 290, 413
FaqI	GGGAC	1 cut(s)	58
Fnu4HI	GCNGC	3 cut(s)	26, 218, 221
Fsp4HI	GCNGC	3 cut(s)	26, 218, 221
FspBI	CTAG	3 cut(s)	164, 348, 371
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	3 cut(s)	26, 218, 221
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	2 cut(s)	20, 477
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	482
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HincII	GTYRAC	1 cut(s)	119
HindII	GTYRAC	1 cut(s)	119
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	2 cut(s)	20, 477
Hpy166II	GTNNAC	2 cut(s)	119, 395
Hpy188I	TCNGA	3 cut(s)	36, 93, 381
Hpy188III	TCNNGA	3 cut(s)	20, 304, 371
Hpy8I	GTNNAC	2 cut(s)	119, 395
Hpy99I	CGWCG	1 cut(s)	393
HpyAV	CCTTC	2 cut(s)	35, 181
HpyCH4III	ACNGT	2 cut(s)	123, 267
HpyCH4IV	ACGT	2 cut(s)	356, 388
HpyCH4V	TGCA	3 cut(s)	217, 223, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	2 cut(s)	356, 388
HspAI	GCGC	1 cut(s)	480
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	4, 103
LmnI	GCTCC	3 cut(s)	22, 22, 232
LpnPI	CCDG	4 cut(s)	33, 92, 221, 490
Lsp1109I	GCAGC	3 cut(s)	12, 207, 229
LweI	GCATC	2 cut(s)	322, 491
MaeI	CTAG	3 cut(s)	164, 348, 371
MaeII	ACGT	2 cut(s)	356, 388
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	2 cut(s)	6, 105
MboI	GATC	2 cut(s)	4, 103
MboII	GAAGA	6 cut(s)	80, 113, 292, 296, 311, 440
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	4 cut(s)	67, 171, 212, 360
MlyI	GAGTC	1 cut(s)	446
MnlI	CCTC	9 cut(s)	42, 162, 166, 189, 267, 400, 411, 414, 463
MroI	TCCGGA	1 cut(s)	19
MseI	TTAA	4 cut(s)	170, 183, 204, 359
MslI	CAYNNNNRTG	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	220
MspI	CCGG	2 cut(s)	20, 477
MwoI	GCNNNNNNNGC	1 cut(s)	63
NdeII	GATC	2 cut(s)	4, 103
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	27, 219, 222
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Psp1406I	AACGTT	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	134
PsrI	GAACNNNNNNTAC	2 cut(s)	366, 398
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	4 cut(s)	170, 183, 204, 359
SatI	GCNGC	3 cut(s)	26, 218, 221
Sau3AI	GATC	2 cut(s)	4, 103
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	338
SfaNI	GCATC	2 cut(s)	322, 491
SgrAI	CRCCGGYG	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	4 cut(s)	67, 171, 212, 360
SspMI	CTAG	3 cut(s)	164, 348, 371
TaaI	ACNGT	2 cut(s)	123, 267
TaiI	ACGT	2 cut(s)	359, 391
TasI	AATT	4 cut(s)	67, 171, 212, 360
Tru1I	TTAA	4 cut(s)	170, 183, 204, 359
Tru9I	TTAA	4 cut(s)	170, 183, 204, 359
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	3 cut(s)	25, 217, 220
Tsp45I	GTSAC	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	148
XbaI	TCTAGA	1 cut(s)	370
XspI	CTAG	3 cut(s)	164, 348, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.