Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Forward (+)

3815464 .. 3817595

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G024200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCAGATGGAGACTGATGACATTCTTCCGAGCTTGGAAGATCAGGGAGTGCATCAACTGTATCCAAAAGGCCCAAACATTGATTTTAAGAAGGAACTGAGGTCACTTAACAGAGAATTGCAGCTGCACATTTTGGAGCTGGCTGATATTCTTGTAGAGAGACCTTCACAGTACGCAAGGAGATTGGAAGATATATCTCTTGTCTTCAAGAACTTGCATCATCTTCTCAACTCATTGCGTCCCCATCAAGCTAGGGCAACGTTAATTCACATTCTAGAACTTCAAATACAACGTCGTAAACAAGTTGTGGAGGATATAAAGAGGAGGAGAGAAGAAGCACGGAGACTTCTCAAGGAGTCTATTGGAACGTTGGAGGACACCGACGCATCTTTTGTGCTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

135

Amino Acids

15.83

Weight (kDa)

7.03

Isoelectric Point (pI)

74.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	2 cut(s)	260, 368
AfaI	GTAC	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	208, 284
AluBI	AGCT	4 cut(s)	33, 124, 139, 251
AluI	AGCT	4 cut(s)	33, 124, 139, 251
Alw26I	GTCTC	3 cut(s)	5, 154, 337
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	121, 124
ArsI	GACNNNNNNTTYG	3 cut(s)	277, 309, 374
AspS9I	GGNCC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	111, 133
BccI	CCATC	1 cut(s)	252
BciVI	GTATCC	1 cut(s)	72
BcoDI	GTCTC	3 cut(s)	5, 154, 337
BfaI	CTAG	2 cut(s)	252, 275
BfuI	GTATCC	1 cut(s)	72
BisI	GCNGC	2 cut(s)	122, 125
BlsI	GCNGC	2 cut(s)	123, 126
BmgT120I	GGNCC	1 cut(s)	71
BmsI	GCATC	3 cut(s)	61, 226, 395
BpiI	GAAGAC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	89
BseRI	GAGGAG	2 cut(s)	337, 340
BseXI	GCAGC	2 cut(s)	111, 133
BsgI	GTGCAG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	225
BsmAI	GTCTC	3 cut(s)	5, 154, 337
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	72
Bso31I	GGTCTC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	40
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	233
BssMI	GATC	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	60, 171
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	98
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	3 cut(s)	5, 154, 337
BstMBI	GATC	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	111, 133
BstV2I	GAAGAC	1 cut(s)	196
BsuI	GTATCC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	71
CseI	GACGC	2 cut(s)	227, 392
Csp6I	GTAC	1 cut(s)	172
CviJI	RGCY	6 cut(s)	33, 72, 124, 139, 143, 251
CviKI_1	RGCY	6 cut(s)	33, 72, 124, 139, 143, 251
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	154
FaiI	YATR	2 cut(s)	194, 317
FaqI	GGGAC	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	122, 125
Fsp4HI	GCNGC	2 cut(s)	122, 125
FspBI	CTAG	2 cut(s)	252, 275
GluI	GCNGC	2 cut(s)	122, 125
HaeIII	GGCC	1 cut(s)	72
HgaI	GACGC	2 cut(s)	227, 392
HinfI	GANTC	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	2 cut(s)	208, 275
Hpy8I	GTNNAC	1 cut(s)	299
Hpy99I	CGWCG	2 cut(s)	297, 386
HpyAV	CCTTC	2 cut(s)	85, 174
HpyCH4III	ACNGT	2 cut(s)	60, 171
HpyCH4IV	ACGT	3 cut(s)	260, 292, 368
HpyCH4V	TGCA	5 cut(s)	4, 52, 121, 127, 217
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	3 cut(s)	260, 292, 368
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	2 cut(s)	29, 125
Lsp1109I	GCAGC	2 cut(s)	111, 133
LweI	GCATC	3 cut(s)	61, 226, 395
MaeI	CTAG	2 cut(s)	252, 275
MaeII	ACGT	3 cut(s)	260, 292, 368
MaeIII	GTNAC	1 cut(s)	102
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	6 cut(s)	17, 50, 196, 200, 215, 344
MluCI	AATT	2 cut(s)	116, 264
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	5 cut(s)	93, 304, 315, 318, 367
MseI	TTAA	3 cut(s)	87, 108, 263
MspA1I	CMGCKG	1 cut(s)	124
NdeII	GATC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	123, 126
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
Psp1406I	AACGTT	2 cut(s)	260, 368
PspPI	GGNCC	1 cut(s)	71
PsrI	GAACNNNNNNTAC	2 cut(s)	270, 302
PvuII	CAGCTG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SaqAI	TTAA	3 cut(s)	87, 108, 263
SatI	GCNGC	2 cut(s)	122, 125
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	365
SetI	ASST	9 cut(s)	35, 104, 126, 141, 166, 253, 263, 295, 371
SfaNI	GCATC	3 cut(s)	61, 226, 395
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	116, 264
SspMI	CTAG	2 cut(s)	252, 275
TaaI	ACNGT	2 cut(s)	60, 171
TaiI	ACGT	3 cut(s)	263, 295, 371
TasI	AATT	2 cut(s)	116, 264
Tru1I	TTAA	3 cut(s)	87, 108, 263
Tru9I	TTAA	3 cut(s)	87, 108, 263
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	2 cut(s)	121, 124
Tsp45I	GTSAC	1 cut(s)	102
TspGWI	ACGGA	1 cut(s)	355
XbaI	TCTAGA	1 cut(s)	274
XspI	CTAG	2 cut(s)	252, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.