Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Forward (+)

5746998 .. 5750273

Gene Structure 3276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1050700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTACATCGACGTATCCACCACCACCCCCATATTATAGGCTCTACAAAGATTACTTGCAAGACCCCAAATCAGCCCCGGAGCCTCCCCCTCCAATTGAAGGGCCATTCCTTTGCTACGGTGCTAATCACACTATTGATGAGATACTTCCAAGCTTGGAAGAACAGGGAGTGCGTCAACTCTACCCAAAAGGCCCAAATATTGACTTTAAAAAGGAATTAAGGTCACTTAACAGAGAATTGCAGCTGCACATTTTGGAGCTGGCTGATATTCTTGTAGAGAGACCATCACAATACGCAAGGAGAGTGGAAGAGATATCTCTCATCTTCAAGAACTTACATCATCTTCTCAACTCATTGCGGCCCCATCAGGCTAGAGCAACGCTAATTCACATTCTAGAACTTCAGATACAACGTCGTAAACAAGCTGTGGAGGATATAAAGAGGAGGAGAGAAGAAGCACAGGGACTTCTCAAGGAGTCTATTGGAACGTTGGAGGACAACGGTGCATCTTTTGCTCTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

176

Amino Acids

20.22

Weight (kDa)

7.03

Isoelectric Point (pI)

79.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	3 - 157	4.3e-44	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	361
AclI	AACGTT	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	101, 331
AluBI	AGCT	4 cut(s)	156, 247, 262, 428
AluI	AGCT	4 cut(s)	156, 247, 262, 428
Alw26I	GTCTC	1 cut(s)	277
AoxI	GGCC	3 cut(s)	104, 193, 362
ApeKI	GCWGC	2 cut(s)	244, 247
AspS9I	GGNCC	3 cut(s)	104, 194, 363
AsuC2I	CCSGG	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	234, 256
BccI	CCATC	2 cut(s)	295, 375
BciVI	GTATCC	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	2 cut(s)	375, 398
BfuI	GTATCC	1 cut(s)	27
BisI	GCNGC	3 cut(s)	245, 248, 362
BlsI	GCNGC	3 cut(s)	246, 249, 363
Bme1390I	CCNGG	1 cut(s)	80
BmgT120I	GGNCC	3 cut(s)	104, 194, 363
BmiI	GGNNCC	2 cut(s)	84, 365
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	518
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMI	GCAATG	1 cut(s)	356
BseRI	GAGGAG	2 cut(s)	460, 463
BseXI	GCAGC	2 cut(s)	234, 256
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	106, 195, 364
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	3 cut(s)	106, 195, 364
Bso31I	GGTCTC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	361
BspANI	GGCC	3 cut(s)	106, 195, 364
BspLI	GGNNCC	2 cut(s)	84, 365
BspTNI	GGTCTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	122, 506
Bst6I	CTCTTC	1 cut(s)	306
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	1 cut(s)	264
BstMAI	GTCTC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	234, 256
BsuI	GTATCC	1 cut(s)	27
BsuRI	GGCC	3 cut(s)	106, 195, 364
Cac8I	GCNNGC	1 cut(s)	264
Cfr13I	GGNCC	3 cut(s)	104, 194, 363
CseI	GACGC	1 cut(s)	164
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
DraI	TTTAAA	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	277
Eco32I	GATATC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	389
EcoRV	GATATC	1 cut(s)	318
FaiI	YATR	3 cut(s)	34, 39, 440
FaqI	GGGAC	1 cut(s)	480
Fnu4HI	GCNGC	3 cut(s)	245, 248, 362
Fsp4HI	GCNGC	3 cut(s)	245, 248, 362
FspBI	CTAG	2 cut(s)	375, 398
GluI	GCNGC	3 cut(s)	245, 248, 362
HaeIII	GGCC	3 cut(s)	106, 195, 364
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	179
HindII	GTYRAC	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	179, 422
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	2 cut(s)	331, 398
Hpy8I	GTNNAC	2 cut(s)	179, 422
Hpy99I	CGWCG	2 cut(s)	16, 420
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	2 cut(s)	122, 506
HpyCH4IV	ACGT	3 cut(s)	14, 415, 491
HpyCH4V	TGCA	4 cut(s)	61, 244, 250, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpySE526I	ACGT	3 cut(s)	14, 415, 491
LmnI	GCTCC	2 cut(s)	82, 259
LpnPI	CCDG	5 cut(s)	93, 152, 248, 356, 449
Lsp1109I	GCAGC	2 cut(s)	234, 256
LweI	GCATC	1 cut(s)	518
MaeI	CTAG	2 cut(s)	375, 398
MaeII	ACGT	3 cut(s)	14, 415, 491
MaeIII	GTNAC	1 cut(s)	225
MboII	GAAGA	5 cut(s)	173, 319, 323, 338, 467
MfeI	CAATTG	1 cut(s)	96
MluCI	AATT	4 cut(s)	96, 218, 239, 387
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	6 cut(s)	96, 102, 427, 438, 441, 490
MseI	TTAA	3 cut(s)	210, 221, 231
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	80
MunI	CAATTG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	515
NciI	CCSGG	1 cut(s)	80
NlaIV	GGNNCC	2 cut(s)	84, 365
NmuCI	GTSAC	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	246, 249, 363
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Psp1406I	AACGTT	1 cut(s)	491
PspN4I	GGNNCC	2 cut(s)	84, 365
PspPI	GGNCC	3 cut(s)	104, 194, 363
PsrI	GAACNNNNNNTAC	2 cut(s)	393, 425
PvuII	CAGCTG	1 cut(s)	247
SaqAI	TTAA	3 cut(s)	210, 221, 231
SatI	GCNGC	3 cut(s)	245, 248, 362
Sau96I	GGNCC	3 cut(s)	104, 194, 363
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	8 cut(s)	17, 158, 227, 249, 264, 418, 430, 494
SfaNI	GCATC	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	4 cut(s)	96, 218, 239, 387
SsiI	CCGC	1 cut(s)	361
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	2 cut(s)	375, 398
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	122, 506
TaiI	ACGT	3 cut(s)	17, 418, 494
TaqI	TCGA	1 cut(s)	11
TasI	AATT	4 cut(s)	96, 218, 239, 387
TauI	GCSGC	1 cut(s)	364
Tru1I	TTAA	3 cut(s)	210, 221, 231
Tru9I	TTAA	3 cut(s)	210, 221, 231
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	2 cut(s)	244, 247
Tsp45I	GTSAC	1 cut(s)	225
XbaI	TCTAGA	1 cut(s)	397
XspI	CTAG	2 cut(s)	375, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.