Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Forward (+)

14977231 .. 14981276

Gene Structure 4046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTACAGCGACCTACCCACCTCCACCACCGTATTATAAGCTATACAAAGATTACCTGCAAGATCCAAAATCAGCTCCTGAGCCGCCACCACCTATTGAAGGGACATACATTTGCTATGGTGCCAATTACACTACGGATGACGTGCTTCCAAGCCTGGAAGAACAGGGAGTGCGTCAGCTGTACCCAAAAGGCCCAAATATTGATTTTAAGAAGGAATTACGATCCCTTAACAGAGAGTTACAGCTGCACATTTTGGAACTCGCTGATATTCTCGTGGAGAGGCCATCACAATATGCAAGGAGGGTGGAAGAAATATCTCTTATATTTAAGAACTTGCATCATCTTCTTAACTCATTGCGGCCCCATCAGGCTAGGGCAACGCTTATACACATTCTAGAACTTCAGATAAAACGACGTAAACAAGCTGTTGAGGATATAAAGAGGAGGAGAGAAGAAGCACAGGCACTTCTGAAGGAGTCCCTTGAATCGTTGGAGGACAATAGTGCAGCTCTTATGTTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

176

Amino Acids

20.3

Weight (kDa)

6.98

Isoelectric Point (pI)

80.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	4 - 158	1.5e-45	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
Acc36I	ACCTGC	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	122
AciI	CCGC	2 cut(s)	86, 361
AclWI	GGATC	2 cut(s)	59, 219
AcuI	CTGAAG	2 cut(s)	389, 494
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	101, 488, 523
AjiI	CACGTC	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	6 cut(s)	43, 77, 181, 247, 428, 512
AluI	AGCT	6 cut(s)	43, 77, 181, 247, 428, 512
AlwI	GGATC	2 cut(s)	59, 219
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	3 cut(s)	193, 284, 362
ApeKI	GCWGC	2 cut(s)	247, 509
AspS9I	GGNCC	2 cut(s)	194, 363
BanI	GGYRCC	1 cut(s)	122
BauI	CACGAG	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	234, 521
BccI	CCATC	2 cut(s)	295, 375
BciT130I	CCWGG	1 cut(s)	158
BfaI	CTAG	2 cut(s)	375, 398
BfmI	CTRYAG	1 cut(s)	6
BfuAI	ACCTGC	1 cut(s)	66
BisI	GCNGC	4 cut(s)	86, 248, 362, 510
BlsI	GCNGC	4 cut(s)	87, 249, 363, 511
Bme1390I	CCNGG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	194, 363
BmiI	GGNNCC	2 cut(s)	124, 365
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	349
Bpu10I	CCTNAGC	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	72
BseRI	GAGGAG	2 cut(s)	460, 463
BseXI	GCAGC	2 cut(s)	234, 521
BsgI	GTGCAG	2 cut(s)	233, 528
BshFI	GGCC	3 cut(s)	195, 286, 364
BshNI	GGYRCC	1 cut(s)	122
BslFI	GGGAC	2 cut(s)	118, 466
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmFI	GGGAC	2 cut(s)	118, 466
BsnI	GGCC	3 cut(s)	195, 286, 364
Bsp143I	GATC	2 cut(s)	64, 224
BspACI	CCGC	2 cut(s)	86, 361
BspANI	GGCC	3 cut(s)	195, 286, 364
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	124, 365
BspMI	ACCTGC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	59, 219
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	356
BssMI	GATC	2 cut(s)	64, 224
BssSI	CACGAG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	81
BstENI	CCTNNNNNAGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	2 cut(s)	67, 227
BstMBI	GATC	2 cut(s)	64, 224
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	234, 521
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	3 cut(s)	195, 286, 364
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	145
BveI	ACCTGC	1 cut(s)	66
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	194, 363
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	184
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	66, 226
DpnII	GATC	2 cut(s)	64, 224
Eco57I	CTGAAG	2 cut(s)	389, 494
EcoNI	CCTNNNNNAGG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	156
FaiI	YATR	9 cut(s)	39, 46, 109, 120, 297, 326, 389, 440, 518
FaqI	GGGAC	2 cut(s)	118, 466
Fnu4HI	GCNGC	4 cut(s)	86, 248, 362, 510
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	4 cut(s)	86, 248, 362, 510
FspBI	CTAG	2 cut(s)	375, 398
GluI	GCNGC	4 cut(s)	86, 248, 362, 510
HaeIII	GGCC	3 cut(s)	195, 286, 364
HgaI	GACGC	1 cut(s)	164
HinfI	GANTC	2 cut(s)	479, 488
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	2 cut(s)	408, 474
Hpy188III	TCNNGA	2 cut(s)	80, 398
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	3 cut(s)	95, 208, 469
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4IV	ACGT	2 cut(s)	144, 418
HpyCH4V	TGCA	5 cut(s)	61, 250, 299, 340, 509
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	2 cut(s)	144, 418
Kzo9I	GATC	2 cut(s)	64, 224
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	7 cut(s)	71, 93, 143, 152, 170, 356, 449
Lsp1109I	GCAGC	2 cut(s)	234, 521
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	375, 398
MaeII	ACGT	2 cut(s)	144, 418
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	2 cut(s)	66, 226
MboI	GATC	2 cut(s)	64, 224
MboII	GAAGA	4 cut(s)	173, 323, 338, 467
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	2 cut(s)	127, 218
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	7 cut(s)	33, 276, 297, 427, 438, 441, 490
MseI	TTAA	4 cut(s)	210, 231, 330, 351
MspA1I	CMGCKG	2 cut(s)	181, 247
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
NdeII	GATC	2 cut(s)	64, 224
NlaIV	GGNNCC	2 cut(s)	124, 365
PfeI	GAWTC	1 cut(s)	488
PkrI	GCNGC	4 cut(s)	87, 249, 363, 511
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PsiI	TTATAA	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	124, 365
PspPI	GGNCC	2 cut(s)	194, 363
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	2 cut(s)	181, 247
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	4 cut(s)	210, 231, 330, 351
SatI	GCNGC	4 cut(s)	86, 248, 362, 510
Sau3AI	GATC	2 cut(s)	64, 224
Sau96I	GGNCC	2 cut(s)	194, 363
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	158
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	6
Sse9I	AATT	2 cut(s)	127, 218
SsiI	CCGC	2 cut(s)	86, 361
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	2 cut(s)	375, 398
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	33
TaiI	ACGT	2 cut(s)	147, 421
TasI	AATT	2 cut(s)	127, 218
TauI	GCSGC	2 cut(s)	88, 364
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	4 cut(s)	210, 231, 330, 351
Tru9I	TTAA	4 cut(s)	210, 231, 330, 351
TseI	GCWGC	2 cut(s)	247, 509
TspGWI	ACGGA	1 cut(s)	152
XagI	CCTNNNNNAGG	1 cut(s)	99
XbaI	TCTAGA	1 cut(s)	397
XspI	CTAG	2 cut(s)	375, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.