Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Forward (+)

28931059 .. 28935512

Gene Structure 4454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG144900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTACAGCGACCTACCCACCTCCACCACCGTTTTATAAGCTATACAAAGATTACTTACAAGATCCCAAATCCGCTCCTGAGCCGCCGCCACCAATTGAAGGGACATACATTTGCTATGGTGCTAATTACACCACAGATGACGTGCTTCCAAGCTTGGAAGAACAGGGAGTGCGTCAACTGTACCCAAAAGGCCCAAATATTGATTTTAAGAAGGAACTAAGGTCCCTTAACAGAGAATTGCAGCTGCACATTTTGGAACTCGCTGATATTCTCGTGGAGAGACCATCACAATATGCAAGGAGAGTGGAAGAAATATCTCTTATATTCAAGAACTTGCATCATCTTCTGAACTCATTGCGGCCCCATCAGGCTAGGGCAACACTAATTCACATTCTAGAACTTCAGATTAAACGACGTAAACAAGCTGTTGAGGATATAAAGAGGTATGCTTTCAACAATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

155

Amino Acids

18.13

Weight (kDa)

8.58

Isoelectric Point (pI)

81.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	4 - 149	2.5e-44	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
AccBSI	CCGCTC	1 cut(s)	77
AciI	CCGC	4 cut(s)	75, 86, 89, 361
AclWI	GGATC	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	389
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	101, 331, 457
AjiI	CACGTC	1 cut(s)	145
AluBI	AGCT	4 cut(s)	43, 156, 247, 428
AluI	AGCT	4 cut(s)	43, 156, 247, 428
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	2 cut(s)	193, 362
ApeKI	GCWGC	2 cut(s)	244, 247
AspS9I	GGNCC	3 cut(s)	194, 225, 363
AvaII	GGWCC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	234, 256
BccI	CCATC	2 cut(s)	295, 375
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	2 cut(s)	375, 398
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	5 cut(s)	86, 89, 245, 248, 362
BlsI	GCNGC	5 cut(s)	87, 90, 246, 249, 363
Bme18I	GGWCC	1 cut(s)	225
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	3 cut(s)	194, 225, 363
BmiI	GGNNCC	2 cut(s)	227, 365
BmsI	GCATC	1 cut(s)	349
Bpu10I	CCTNAGC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	356
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	234, 256
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	2 cut(s)	195, 364
BslFI	GGGAC	2 cut(s)	118, 211
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	1 cut(s)	277
BsmFI	GGGAC	2 cut(s)	118, 211
BsnI	GGCC	2 cut(s)	195, 364
Bso31I	GGTCTC	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	4 cut(s)	75, 86, 89, 361
BspANI	GGCC	2 cut(s)	195, 364
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	227, 365
BspPI	GGATC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	277
BsrBI	CCGCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	356
BssMI	GATC	1 cut(s)	64
BssSI	CACGAG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	33, 183
BstDEI	CTNAG	2 cut(s)	81, 221
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	234, 256
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	195, 364
BtrI	CACGTC	1 cut(s)	145
Cfr13I	GGNCC	3 cut(s)	194, 225, 363
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	184
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviJI	RGCY	9 cut(s)	5, 43, 85, 156, 195, 247, 364, 374, 428
CviKI_1	RGCY	9 cut(s)	5, 43, 85, 156, 195, 247, 364, 374, 428
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	81, 221
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	225
FaiI	YATR	8 cut(s)	39, 46, 109, 120, 297, 326, 440, 450
FaqI	GGGAC	2 cut(s)	118, 211
Fnu4HI	GCNGC	5 cut(s)	86, 89, 245, 248, 362
Fsp4HI	GCNGC	5 cut(s)	86, 89, 245, 248, 362
FspBI	CTAG	2 cut(s)	375, 398
GluI	GCNGC	5 cut(s)	86, 89, 245, 248, 362
HaeIII	GGCC	2 cut(s)	195, 364
HgaI	GACGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	179
HindII	GTYRAC	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	179, 422
Hpy188I	TCNGA	2 cut(s)	351, 408
Hpy188III	TCNNGA	3 cut(s)	80, 331, 398
Hpy8I	GTNNAC	2 cut(s)	179, 422
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	2 cut(s)	95, 208
HpyCH4III	ACNGT	2 cut(s)	33, 183
HpyCH4IV	ACGT	2 cut(s)	144, 418
HpyCH4V	TGCA	4 cut(s)	244, 250, 299, 340
HpyF3I	CTNAG	2 cut(s)	81, 221
HpySE526I	ACGT	2 cut(s)	144, 418
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	3 cut(s)	93, 152, 356
Lsp1109I	GCAGC	2 cut(s)	234, 256
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	375, 398
MaeII	ACGT	2 cut(s)	144, 418
MalI	GATC	1 cut(s)	66
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	173, 323, 338
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	5 cut(s)	96, 127, 239, 387, 460
MnlI	CCTC	3 cut(s)	33, 427, 438
MseI	TTAA	3 cut(s)	210, 231, 411
MspA1I	CMGCKG	1 cut(s)	247
MunI	CAATTG	1 cut(s)	96
NdeII	GATC	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	227, 365
PkrI	GCNGC	5 cut(s)	87, 90, 246, 249, 363
PpuMI	RGGWCCY	1 cut(s)	225
PsiI	TTATAA	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	227, 365
PspPI	GGNCC	3 cut(s)	194, 225, 363
PspPPI	RGGWCCY	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	3 cut(s)	210, 231, 411
SatI	GCNGC	5 cut(s)	86, 89, 245, 248, 362
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	3 cut(s)	194, 225, 363
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	225
Sse9I	AATT	5 cut(s)	96, 127, 239, 387, 460
SsiI	CCGC	4 cut(s)	75, 86, 89, 361
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	2 cut(s)	375, 398
TaaI	ACNGT	2 cut(s)	33, 183
TaiI	ACGT	2 cut(s)	147, 421
TasI	AATT	5 cut(s)	96, 127, 239, 387, 460
TauI	GCSGC	3 cut(s)	88, 91, 364
Tru1I	TTAA	3 cut(s)	210, 231, 411
Tru9I	TTAA	3 cut(s)	210, 231, 411
TseI	GCWGC	2 cut(s)	244, 247
VpaK11BI	GGWCC	1 cut(s)	225
XbaI	TCTAGA	1 cut(s)	397
XspI	CTAG	2 cut(s)	375, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.