Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Forward (+)

23489300 .. 23501121

Gene Structure 11822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG244400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGATGAATGAGAGTATTCGAGAAAGTTTACGTGCACGTGTTGGGAAGCTATCTCATGGTAAGAAGAAAGGAGCAATTGAAGAACGAGAAGAACTTTTGAGACGGATGACGTGCTTCCAAGCTTGGAAGAACAAGGAGTGCGTCTACTGTACCCAAGAGGCCCAAATATTGGAACTAAGGTCCCTTAACAGAGAATTGCAGCTGCACATTTTGGAACTTGCTGATATTCCTGTGGAGAGACCATCACATTATGCAAGGAGAGTGGAAGAAGTATCTCTTATATTCAAGAACTTGCATCATCTTTTGAACTCATTGCGACCCCATCAGGCTAGGAGACCTCCGGAGGACCGTAGCGTGAGGCGGCTGCCTCACTCCACACCCCTTAGGCTAGTACTAACTGACTTCAACGGGACGTGTTTTCTTGTCGTCAATAGTAAAGAGATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

149

Amino Acids

17.53

Weight (kDa)

9.58

Isoelectric Point (pI)

70.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	52 - 112	1.9e-16	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	144
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	1 cut(s)	361
AcvI	CACGTG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	151, 393
AfiI	CCNNNNNNNGG	1 cut(s)	169
AflIII	ACRYGT	2 cut(s)	37, 413
AgsI	TTSAA	4 cut(s)	80, 286, 307, 406
AjiI	CACGTC	2 cut(s)	111, 414
AluBI	AGCT	3 cut(s)	49, 122, 202
AluI	AGCT	3 cut(s)	49, 122, 202
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	3 cut(s)	94, 232, 328
Alw44I	GTGCAC	1 cut(s)	33
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	1 cut(s)	159
ApaLI	GTGCAC	1 cut(s)	33
ApeKI	GCWGC	3 cut(s)	199, 202, 364
AspS9I	GGNCC	3 cut(s)	160, 180, 346
AvaII	GGWCC	2 cut(s)	180, 346
AxyI	CCTNAGG	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	37
BbrPI	CACGTG	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	3 cut(s)	189, 211, 351
BccI	CCATC	2 cut(s)	250, 330
BcoDI	GTCTC	3 cut(s)	94, 232, 328
BfaI	CTAG	2 cut(s)	330, 389
BisI	GCNGC	4 cut(s)	200, 203, 362, 365
BlsI	GCNGC	4 cut(s)	201, 204, 363, 366
BmcAI	AGTACT	1 cut(s)	393
Bme18I	GGWCC	2 cut(s)	180, 346
BmgBI	CACGTC	2 cut(s)	111, 414
BmgT120I	GGNCC	3 cut(s)	160, 180, 346
BmiI	GGNNCC	1 cut(s)	182
BmsI	GCATC	1 cut(s)	304
BsaAI	YACGTR	2 cut(s)	32, 38
BsaI	GGTCTC	2 cut(s)	232, 328
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse21I	CCTNAGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	311
BseAI	TCCGGA	1 cut(s)	340
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	3 cut(s)	189, 211, 351
BsgI	GTGCAG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	2 cut(s)	166, 424
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	3 cut(s)	94, 232, 328
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	2 cut(s)	166, 424
BsnI	GGCC	1 cut(s)	161
Bso31I	GGTCTC	2 cut(s)	232, 328
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	340
BspACI	CCGC	1 cut(s)	361
BspANI	GGCC	1 cut(s)	161
BspEI	TCCGGA	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	182
BspTNI	GGTCTC	2 cut(s)	232, 328
BsrDI	GCAATG	1 cut(s)	311
Bst4CI	ACNGT	2 cut(s)	149, 350
BstBAI	YACGTR	2 cut(s)	32, 38
BstDEI	CTNAG	2 cut(s)	176, 383
BstF5I	GGATG	1 cut(s)	111
BstMAI	GTCTC	3 cut(s)	94, 232, 328
BstSLI	GKGCMC	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	189, 211, 351
Bsu36I	CCTNAGG	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	161
BtrI	CACGTC	2 cut(s)	111, 414
BtsCI	GGATG	1 cut(s)	111
Cfr13I	GGNCC	3 cut(s)	160, 180, 346
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	150, 392
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	7 cut(s)	49, 122, 161, 202, 329, 364, 388
CviKI_1	RGCY	7 cut(s)	49, 122, 161, 202, 329, 364, 388
CviQI	GTAC	2 cut(s)	150, 392
DdeI	CTNAG	2 cut(s)	176, 383
Eco31I	GGTCTC	2 cut(s)	232, 328
Eco47I	GGWCC	2 cut(s)	180, 346
Eco72I	CACGTG	1 cut(s)	38
Eco81I	CCTNAGG	1 cut(s)	383
EcoO109I	RGGNCCY	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	1 cut(s)	59
FaiI	YATR	3 cut(s)	57, 252, 281
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	2 cut(s)	166, 424
FatI	CATG	1 cut(s)	55
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	200, 203, 362, 365
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	200, 203, 362, 365
FspBI	CTAG	2 cut(s)	330, 389
GluI	GCNGC	4 cut(s)	200, 203, 362, 365
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	1 cut(s)	341
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	59
HindIII	AAGCTT	1 cut(s)	120
HpaII	CCGG	1 cut(s)	341
Hpy166II	GTNNAC	3 cut(s)	29, 35, 145
Hpy188III	TCNNGA	3 cut(s)	20, 286, 341
Hpy8I	GTNNAC	3 cut(s)	29, 35, 145
HpyCH4III	ACNGT	2 cut(s)	149, 350
HpyCH4IV	ACGT	4 cut(s)	31, 37, 110, 413
HpyCH4V	TGCA	5 cut(s)	35, 199, 205, 254, 295
HpyF3I	CTNAG	2 cut(s)	176, 383
HpySE526I	ACGT	4 cut(s)	31, 37, 110, 413
Hsp92II	CATG	1 cut(s)	59
Kpn2I	TCCGGA	1 cut(s)	340
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	3 cut(s)	243, 311, 354
Lsp1109I	GCAGC	3 cut(s)	189, 211, 351
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	2 cut(s)	330, 389
MaeII	ACGT	4 cut(s)	31, 37, 110, 413
MboII	GAAGA	5 cut(s)	76, 92, 101, 139, 278
MfeI	CAATTG	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	2 cut(s)	75, 194
MnlI	CCTC	5 cut(s)	151, 337, 348, 351, 378
MroI	TCCGGA	1 cut(s)	340
MseI	TTAA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	1 cut(s)	341
MunI	CAATTG	1 cut(s)	75
NlaIII	CATG	1 cut(s)	59
NlaIV	GGNNCC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	4 cut(s)	201, 204, 363, 366
PmaCI	CACGTG	1 cut(s)	38
PmlI	CACGTG	1 cut(s)	38
Ppu21I	YACGTR	2 cut(s)	32, 38
PpuMI	RGGWCCY	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	180
PspCI	CACGTG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	3 cut(s)	160, 180, 346
PspPPI	RGGWCCY	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	202
RsaI	GTAC	2 cut(s)	151, 393
RsaNI	GTAC	2 cut(s)	150, 392
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	4 cut(s)	200, 203, 362, 365
Sau96I	GGNCC	3 cut(s)	160, 180, 346
ScaI	AGTACT	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	9 cut(s)	34, 40, 51, 113, 124, 182, 204, 340, 416
SfaNI	GCATC	1 cut(s)	304
SinI	GGWCC	2 cut(s)	180, 346
Sse9I	AATT	2 cut(s)	75, 194
SsiI	CCGC	1 cut(s)	361
SspI	AATATT	1 cut(s)	168
SspMI	CTAG	2 cut(s)	330, 389
TaaI	ACNGT	2 cut(s)	149, 350
TaiI	ACGT	4 cut(s)	34, 40, 113, 416
TaqI	TCGA	1 cut(s)	19
TasI	AATT	2 cut(s)	75, 194
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseI	GCWGC	3 cut(s)	199, 202, 364
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	169
VneI	GTGCAC	1 cut(s)	33
VpaK11BI	GGWCC	2 cut(s)	180, 346
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	330, 389
ZrmI	AGTACT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.