Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Reverse (-)

25995489 .. 25997019

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAGGCTGAGAGATTTTAAGAAGGAATTGAGGTCCCTTAACAGAGAATTGCAGCTGCACATTTTTGAACTTGCTGATATTCTTGTGGAGAGACCATCACAATATGCAAGGAGAGTGGAAGAAATATCTCTTATATTCCAGAACTTGCATCATCGTCTGAACTCATTGCGGCCCCATCAGGCTAGGGCAACACTAATTCACATTCTAGAACTTCAGACAAAACGACGTAAACAAGCTGTTGAGGATATACAGAGAAAGAGAGAAGAAGCACAGGCACTTCTGAAGGAGTCCCTTGAATCATTGGACACTGGTGCATCTCTTATGTTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

110

Amino Acids

13.12

Weight (kDa)

9.97

Isoelectric Point (pI)

69.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	5 - 94	2.6e-26	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	169
AcuI	CTGAAG	2 cut(s)	197, 302
AgsI	TTSAA	3 cut(s)	68, 296, 328
AluBI	AGCT	2 cut(s)	55, 236
AluI	AGCT	2 cut(s)	55, 236
Alw26I	GTCTC	1 cut(s)	85
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	52, 55
AspS9I	GGNCC	2 cut(s)	33, 171
AvaII	GGWCC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	42, 64
BccI	CCATC	2 cut(s)	103, 183
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	2 cut(s)	183, 206
BisI	GCNGC	3 cut(s)	53, 56, 170
BlsI	GCNGC	3 cut(s)	54, 57, 171
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	33, 171
BmiI	GGNNCC	2 cut(s)	35, 173
BmsI	GCATC	2 cut(s)	157, 323
BsaI	GGTCTC	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	42, 64
BsgI	GTGCAG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	172
BslFI	GGGAC	2 cut(s)	19, 274
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	2 cut(s)	19, 274
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	85
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	35, 173
BspTNI	GGTCTC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	313
BstDEI	CTNAG	1 cut(s)	8
BstMAI	GTCTC	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	42, 64
BsuRI	GGCC	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	306
Cfr13I	GGNCC	2 cut(s)	33, 171
CspCI	CAANNNNNGTGG	2 cut(s)	96, 131
CviJI	RGCY	5 cut(s)	7, 55, 172, 182, 236
CviKI_1	RGCY	5 cut(s)	7, 55, 172, 182, 236
DdeI	CTNAG	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	33
Eco57I	CTGAAG	2 cut(s)	197, 302
EcoO109I	RGGNCCY	1 cut(s)	33
FaiI	YATR	4 cut(s)	105, 134, 248, 323
FaqI	GGGAC	2 cut(s)	19, 274
Fnu4HI	GCNGC	3 cut(s)	53, 56, 170
Fsp4HI	GCNGC	3 cut(s)	53, 56, 170
FspBI	CTAG	2 cut(s)	183, 206
GluI	GCNGC	3 cut(s)	53, 56, 170
HaeIII	GGCC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	287, 296
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	3 cut(s)	159, 216, 282
Hpy188III	TCNNGA	2 cut(s)	139, 206
Hpy8I	GTNNAC	1 cut(s)	230
Hpy99I	CGWCG	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	16, 277
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	5 cut(s)	52, 58, 107, 148, 314
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	226
LpnPI	CCDG	4 cut(s)	152, 164, 257, 294
Lsp1109I	GCAGC	2 cut(s)	42, 64
LweI	GCATC	2 cut(s)	157, 323
MaeI	CTAG	2 cut(s)	183, 206
MaeII	ACGT	1 cut(s)	226
MboII	GAAGA	2 cut(s)	131, 275
MluCI	AATT	3 cut(s)	26, 47, 195
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	2 cut(s)	24, 235
MseI	TTAA	2 cut(s)	18, 39
MspA1I	CMGCKG	1 cut(s)	55
NlaIV	GGNNCC	2 cut(s)	35, 173
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	54, 57, 171
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PpuMI	RGGWCCY	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	33
PspN4I	GGNNCC	2 cut(s)	35, 173
PspPI	GGNCC	2 cut(s)	33, 171
PspPPI	RGGWCCY	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	18, 39
SatI	GCNGC	3 cut(s)	53, 56, 170
Sau96I	GGNCC	2 cut(s)	33, 171
SchI	GAGTC	1 cut(s)	296
SetI	ASST	4 cut(s)	35, 57, 229, 238
SfaNI	GCATC	2 cut(s)	157, 323
SinI	GGWCC	1 cut(s)	33
Sse9I	AATT	3 cut(s)	26, 47, 195
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	2 cut(s)	183, 206
TaiI	ACGT	1 cut(s)	229
TasI	AATT	3 cut(s)	26, 47, 195
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	18, 39
Tru9I	TTAA	2 cut(s)	18, 39
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	2 cut(s)	52, 55
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	33
XbaI	TCTAGA	1 cut(s)	205
XspI	CTAG	2 cut(s)	183, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.