Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Reverse (-)

12093721 .. 12097022

Gene Structure 3302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G086000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTACAGCGACATATCCACCACCACCACCATATTATAAGCTCTACAAAGATTACTTGCAAGATCCCAAATCAGCTCCGGAGCCGCCCCCTCCGATTGAAGGGACATACATTTGCTATGGTGGCAATTACACTACTGATGACATTCTTCCGAGCTTGGAAGATCAGGGAGTGCGTCAACTGTATCCAAAAGGCCCAAACATTGATTATAAGAAGGAACTGAGGTCACTTAACAGAGAATTACAGCTGCACATTTTGGAGCTGGCTGATATTCTTGTAGAGAGACCATCACAGTACGCGAGGAGAGTGGAAGATATATCTCTTATCTTCAAGAACTTGCATCATCTTCTCAACTCATTGCGTCCCCATCAAGCTAGGGCAACGCTAATTCACATTCTAGAACTTCAGATACAACGTCGTAAACAAGCTGTGGAGGATATAAAGAGGAGGAGAGAAGAAGCACAGAGACTTCTCAAGGAGTCTATTGGAACATTGGAGGACACCGGCGCATCTTTTGTGCTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

176

Amino Acids

20.29

Weight (kDa)

7.82

Isoelectric Point (pI)

75.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	39, 210
AccII	CGCG	1 cut(s)	299
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	389
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	2 cut(s)	101, 331
AluBI	AGCT	7 cut(s)	43, 77, 156, 247, 262, 374, 428
AluI	AGCT	7 cut(s)	43, 77, 156, 247, 262, 374, 428
Alw26I	GTCTC	2 cut(s)	277, 460
AlwI	GGATC	1 cut(s)	59
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	2 cut(s)	295, 375
BciVI	GTATCC	1 cut(s)	195
BcoDI	GTCTC	2 cut(s)	277, 460
BfaI	CTAG	2 cut(s)	375, 398
BfmI	CTRYAG	1 cut(s)	6
BfuI	GTATCC	1 cut(s)	195
BisI	GCNGC	2 cut(s)	86, 248
BlsI	GCNGC	2 cut(s)	87, 249
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	84
BmsI	GCATC	2 cut(s)	349, 518
BpuEI	CTTGAG	1 cut(s)	458
BsaI	GGTCTC	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse118I	RCCGGY	1 cut(s)	503
Bse3DI	GCAATG	1 cut(s)	356
BseAI	TCCGGA	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	212
BseRI	GAGGAG	3 cut(s)	316, 460, 463
BseXI	GCAGC	1 cut(s)	234
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	80, 504
BslFI	GGGAC	2 cut(s)	118, 348
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	2 cut(s)	277, 460
BsmFI	GGGAC	2 cut(s)	118, 348
BsnI	GGCC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	277
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	64, 163
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	213
BspEI	TCCGGA	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	356
BsrFI	RCCGGY	1 cut(s)	503
BssAI	RCCGGY	1 cut(s)	503
BssMI	GATC	2 cut(s)	64, 163
Bst4CI	ACNGT	2 cut(s)	183, 294
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	221
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	2 cut(s)	67, 166
BstMAI	GTCTC	2 cut(s)	277, 460
BstMBI	GATC	2 cut(s)	64, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	264
CfoI	GCGC	1 cut(s)	509
Cfr10I	RCCGGY	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	2 cut(s)	164, 350
Csp6I	GTAC	1 cut(s)	295
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	2 cut(s)	66, 165
DpnII	GATC	2 cut(s)	64, 163
Eco31I	GGTCTC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	389
FaiI	YATR	8 cut(s)	16, 34, 39, 109, 120, 210, 317, 440
FaqI	GGGAC	2 cut(s)	118, 348
Fnu4HI	GCNGC	2 cut(s)	86, 248
Fsp4HI	GCNGC	2 cut(s)	86, 248
FspBI	CTAG	2 cut(s)	375, 398
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	2 cut(s)	86, 248
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	2 cut(s)	80, 504
HgaI	GACGC	2 cut(s)	164, 350
HhaI	GCGC	1 cut(s)	509
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HincII	GTYRAC	1 cut(s)	179
HindII	GTYRAC	1 cut(s)	179
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	2 cut(s)	80, 504
Hpy166II	GTNNAC	2 cut(s)	179, 422
Hpy188I	TCNGA	3 cut(s)	96, 153, 408
Hpy188III	TCNNGA	3 cut(s)	80, 331, 398
Hpy8I	GTNNAC	2 cut(s)	179, 422
Hpy99I	CGWCG	1 cut(s)	420
HpyAV	CCTTC	2 cut(s)	95, 208
HpyCH4III	ACNGT	2 cut(s)	183, 294
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	3 cut(s)	61, 250, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	415
HspAI	GCGC	1 cut(s)	507
Kpn2I	TCCGGA	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	64, 163
LmnI	GCTCC	3 cut(s)	82, 82, 259
LpnPI	CCDG	4 cut(s)	93, 152, 248, 517
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	2 cut(s)	349, 518
MaeI	CTAG	2 cut(s)	375, 398
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	2 cut(s)	66, 165
MboI	GATC	2 cut(s)	64, 163
MboII	GAAGA	6 cut(s)	140, 173, 319, 323, 338, 467
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	3 cut(s)	127, 239, 387
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	7 cut(s)	102, 216, 294, 427, 438, 441, 490
MroI	TCCGGA	1 cut(s)	79
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	2 cut(s)	80, 504
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	123
NdeII	GATC	2 cut(s)	64, 163
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	87, 249
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PsiI	TTATAA	2 cut(s)	39, 210
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	194
PsrI	GAACNNNNNNTAC	2 cut(s)	393, 425
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	2 cut(s)	86, 248
Sau3AI	GATC	2 cut(s)	64, 163
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	488
SetI	ASST	9 cut(s)	45, 79, 158, 227, 249, 264, 376, 418, 430
SfaNI	GCATC	2 cut(s)	349, 518
SfcI	CTRYAG	1 cut(s)	6
SgrAI	CRCCGGYG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	3 cut(s)	127, 239, 387
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	2 cut(s)	375, 398
TaaI	ACNGT	2 cut(s)	183, 294
TaiI	ACGT	1 cut(s)	418
TasI	AATT	3 cut(s)	127, 239, 387
TauI	GCSGC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	225
XbaI	TCTAGA	1 cut(s)	397
XspI	CTAG	2 cut(s)	375, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.