Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008653.1

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Reverse (-)

8876 .. 11592

Gene Structure 2717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008653.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgttaggtttggcagcaaggttcttgaaatggctacagcgacctacccacctccaccaccgtattataagctatacaaagattacttgcaagatcccaaatccgctcctgagccgccgccaccaattgaagggacatacatttgctatggtgctaattacaccacagatgacggtgcttccaagcttggaagaacagggagtgcgtcaactgtacccaaaaggcccaaatattgattttaagaaggaactgaggtcccttaacagagaattgcagctgcacattttggaacttgctgatattctcgtggagagaccatcacaatatgcaaggagagtggaagaaatatctcttatattcaagaacttgcatcatcttctgaactcattgcggccccatcaggctagggcaacactaattcacattctagaacttcagattaaacgacgtaaacaagctgttgaggatataaagaggaggagagaagaagcacaggcacttctgaaggagtcccttgaatcgttggaggacactggtgcatctcttatgttgaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

185

Amino Acids

21.67

Weight (kDa)

10.2

Isoelectric Point (pI)

66.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	106
AciI	CCGC	4 cut(s)	104, 115, 118, 391
AclWI	GGATC	1 cut(s)	88
AcuI	CTGAAG	2 cut(s)	419, 524
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	5 cut(s)	28, 130, 361, 518, 553
AluBI	AGCT	4 cut(s)	72, 186, 277, 458
AluI	AGCT	4 cut(s)	72, 186, 277, 458
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	88
AoxI	GGCC	2 cut(s)	223, 392
ApeKI	GCWGC	3 cut(s)	14, 274, 277
AspS9I	GGNCC	3 cut(s)	224, 255, 393
AvaII	GGWCC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	305
BbvI	GCAGC	3 cut(s)	26, 264, 286
BccI	CCATC	2 cut(s)	325, 405
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	2 cut(s)	405, 428
BfmI	CTRYAG	1 cut(s)	35
BisI	GCNGC	6 cut(s)	15, 115, 118, 275, 278, 392
BlsI	GCNGC	6 cut(s)	16, 116, 119, 276, 279, 393
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	3 cut(s)	224, 255, 393
BmiI	GGNNCC	2 cut(s)	257, 395
BmsI	GCATC	2 cut(s)	379, 548
Bpu10I	CCTNAGC	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	538
Bse3DI	GCAATG	1 cut(s)	386
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	386
BseMII	CTCAG	2 cut(s)	101, 242
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	2 cut(s)	490, 493
BseXI	GCAGC	3 cut(s)	26, 264, 286
BsgI	GTGCAG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	225, 394
BslFI	GGGAC	3 cut(s)	147, 241, 496
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	3 cut(s)	147, 241, 496
BsnI	GGCC	2 cut(s)	225, 394
Bso31I	GGTCTC	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	93
BspACI	CCGC	4 cut(s)	104, 115, 118, 391
BspANI	GGCC	2 cut(s)	225, 394
BspCNI	CTCAG	2 cut(s)	102, 243
BspLI	GGNNCC	2 cut(s)	257, 395
BspPI	GGATC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	307
BsrBI	CCGCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	538
BssMI	GATC	1 cut(s)	93
BssSI	CACGAG	1 cut(s)	305
Bst2BI	CACGAG	1 cut(s)	305
Bst4CI	ACNGT	3 cut(s)	62, 175, 213
BstDEI	CTNAG	2 cut(s)	110, 251
BstKTI	GATC	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	26, 264, 286
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	225, 394
BtsIMutI	CAGTG	1 cut(s)	531
Cfr13I	GGNCC	3 cut(s)	224, 255, 393
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	214
CspCI	CAANNNNNGTGG	2 cut(s)	318, 353
CviJI	RGCY	9 cut(s)	34, 72, 114, 186, 225, 277, 394, 404, 458
CviKI_1	RGCY	9 cut(s)	34, 72, 114, 186, 225, 277, 394, 404, 458
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	110, 251
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	255
Eco57I	CTGAAG	2 cut(s)	419, 524
EcoO109I	RGGNCCY	1 cut(s)	255
FaiI	YATR	8 cut(s)	68, 75, 138, 149, 327, 356, 470, 548
FaqI	GGGAC	3 cut(s)	147, 241, 496
Fnu4HI	GCNGC	6 cut(s)	15, 115, 118, 275, 278, 392
Fsp4HI	GCNGC	6 cut(s)	15, 115, 118, 275, 278, 392
FspBI	CTAG	2 cut(s)	405, 428
GluI	GCNGC	6 cut(s)	15, 115, 118, 275, 278, 392
HaeIII	GGCC	2 cut(s)	225, 394
HgaI	GACGC	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	209
HindII	GTYRAC	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	2 cut(s)	509, 518
Hpy166II	GTNNAC	2 cut(s)	209, 452
Hpy188I	TCNGA	3 cut(s)	381, 438, 504
Hpy188III	TCNNGA	4 cut(s)	25, 109, 361, 428
Hpy8I	GTNNAC	2 cut(s)	209, 452
Hpy99I	CGWCG	1 cut(s)	450
HpyAV	CCTTC	3 cut(s)	124, 238, 499
HpyCH4III	ACNGT	3 cut(s)	62, 175, 213
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	6 cut(s)	90, 274, 280, 329, 370, 539
HpyF3I	CTNAG	2 cut(s)	110, 251
HpySE526I	ACGT	1 cut(s)	448
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	5 cut(s)	122, 182, 386, 479, 519
Lsp1109I	GCAGC	3 cut(s)	26, 264, 286
LweI	GCATC	2 cut(s)	379, 548
MaeI	CTAG	2 cut(s)	405, 428
MaeII	ACGT	1 cut(s)	448
MalI	GATC	1 cut(s)	95
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	1 cut(s)	93
MboII	GAAGA	4 cut(s)	203, 353, 368, 497
MfeI	CAATTG	1 cut(s)	125
MflI	RGATCY	1 cut(s)	93
MluCI	AATT	4 cut(s)	125, 156, 269, 417
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	6 cut(s)	62, 246, 457, 468, 471, 520
MseI	TTAA	3 cut(s)	240, 261, 441
MspA1I	CMGCKG	1 cut(s)	277
MunI	CAATTG	1 cut(s)	125
NdeII	GATC	1 cut(s)	93
NlaIV	GGNNCC	2 cut(s)	257, 395
PfeI	GAWTC	1 cut(s)	518
PkrI	GCNGC	6 cut(s)	16, 116, 119, 276, 279, 393
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PpuMI	RGGWCCY	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	68
Psp5II	RGGWCCY	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	257, 395
PspPI	GGNCC	3 cut(s)	224, 255, 393
PspPPI	RGGWCCY	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	93
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	3 cut(s)	240, 261, 441
SatI	GCNGC	6 cut(s)	15, 115, 118, 275, 278, 392
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	3 cut(s)	224, 255, 393
SchI	GAGTC	1 cut(s)	518
SfaNI	GCATC	2 cut(s)	379, 548
SfcI	CTRYAG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	255
Sse9I	AATT	4 cut(s)	125, 156, 269, 417
SsiI	CCGC	4 cut(s)	104, 115, 118, 391
SspI	AATATT	1 cut(s)	232
SspMI	CTAG	2 cut(s)	405, 428
TaaI	ACNGT	3 cut(s)	62, 175, 213
TaiI	ACGT	1 cut(s)	451
TasI	AATT	4 cut(s)	125, 156, 269, 417
TauI	GCSGC	3 cut(s)	117, 120, 394
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	3 cut(s)	240, 261, 441
Tru9I	TTAA	3 cut(s)	240, 261, 441
TscAI	CASTG	1 cut(s)	538
TseI	GCWGC	3 cut(s)	14, 274, 277
TspRI	CASTG	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	255
XbaI	TCTAGA	1 cut(s)	427
XspI	CTAG	2 cut(s)	405, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.