Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Forward (+)

23866696 .. 23870246

Gene Structure 3551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44324

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGAGTACGTATTCAAGAAAGTTTAGGTGCACGTGTTGGGAAGCTATCTCATGATAAGAAGAAAGCAATTGAAGAAGAAGAAGAACTTTTGAGCTATACGGCTGATGTGCTTCCAAGCTTGGAAGAACAGGAAGTGCGTCAACTGTACCCAAAAGGCCCAAATATTGATTTTAAGAAGGAATTGAGGTCCCTTAACAGAGAATTGCAGCTGCACATTTTTGAACTTGCTGATATTCTTGTGGAGAGACCATCACAATATGCAAGGAGAGTGGAAGAAATATCTCTTATATTCCAGAACTTGCATCATCGTCTGAACTCATTGCGGCCCCATCAGGCTAGGGTAACACTAATTCACATTCTAGAACTTCAGACAAAACGACATAAACAAGCTGTTGAGGATATACAGAGACCTAGGTACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

141

Amino Acids

16.81

Weight (kDa)

8.89

Isoelectric Point (pI)

74.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	34 - 137	6.1e-32	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	353
AcvI	CACGTG	1 cut(s)	35
AfaI	GTAC	3 cut(s)	9, 149, 419
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	3 cut(s)	17, 74, 224
AluBI	AGCT	5 cut(s)	46, 96, 120, 211, 392
AluI	AGCT	5 cut(s)	46, 96, 120, 211, 392
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	2 cut(s)	241, 403
Alw44I	GTGCAC	1 cut(s)	30
AoxI	GGCC	2 cut(s)	157, 326
ApaLI	GTGCAC	1 cut(s)	30
ApeKI	GCWGC	2 cut(s)	208, 211
AspA2I	CCTAGG	1 cut(s)	413
AspS9I	GGNCC	3 cut(s)	158, 189, 327
AvaII	GGWCC	1 cut(s)	189
AvrII	CCTAGG	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	34
BbrPI	CACGTG	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	198, 220
BccI	CCATC	2 cut(s)	259, 339
BceAI	ACGGC	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	241, 403
BfaI	CTAG	3 cut(s)	339, 362, 414
BisI	GCNGC	3 cut(s)	209, 212, 326
BlnI	CCTAGG	1 cut(s)	413
BlsI	GCNGC	3 cut(s)	210, 213, 327
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	3 cut(s)	158, 189, 327
BmiI	GGNNCC	2 cut(s)	191, 329
BmsI	GCATC	1 cut(s)	313
BsaAI	YACGTR	2 cut(s)	11, 35
BsaI	GGTCTC	2 cut(s)	241, 403
BsaJI	CCNNGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	413
BseMI	GCAATG	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	198, 220
BsgI	GTGCAG	1 cut(s)	197
BshFI	GGCC	2 cut(s)	159, 328
BsiHKAI	GWGCWC	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	175
BsmAI	GTCTC	2 cut(s)	241, 403
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	159, 328
Bso31I	GGTCTC	2 cut(s)	241, 403
Bsp1286I	GDGCHC	1 cut(s)	34
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	159, 328
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	191, 329
BspTNI	GGTCTC	2 cut(s)	241, 403
BsrDI	GCAATG	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	147
BstBAI	YACGTR	2 cut(s)	11, 35
BstMAI	GTCTC	2 cut(s)	241, 403
BstSLI	GKGCMC	1 cut(s)	34
BstSNI	TACGTA	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	198, 220
BsuRI	GGCC	2 cut(s)	159, 328
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	3 cut(s)	158, 189, 327
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	3 cut(s)	8, 148, 418
CspCI	CAANNNNNGTGG	2 cut(s)	252, 287
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	9 cut(s)	46, 96, 104, 120, 159, 211, 328, 338, 392
CviKI_1	RGCY	9 cut(s)	46, 96, 104, 120, 159, 211, 328, 338, 392
CviQI	GTAC	3 cut(s)	8, 148, 418
Eco105I	TACGTA	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	413
Eco31I	GGTCTC	2 cut(s)	241, 403
Eco47I	GGWCC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	353
Eco72I	CACGTG	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	1 cut(s)	56
FaiI	YATR	6 cut(s)	54, 99, 261, 290, 384, 404
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	1 cut(s)	52
Fnu4HI	GCNGC	3 cut(s)	209, 212, 326
Fsp4HI	GCNGC	3 cut(s)	209, 212, 326
FspBI	CTAG	3 cut(s)	339, 362, 414
GluI	GCNGC	3 cut(s)	209, 212, 326
HaeIII	GGCC	2 cut(s)	159, 328
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	143
HindII	GTYRAC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	32, 143
Hpy188I	TCNGA	2 cut(s)	315, 372
Hpy188III	TCNNGA	4 cut(s)	17, 53, 295, 362
Hpy8I	GTNNAC	2 cut(s)	32, 143
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4IV	ACGT	2 cut(s)	10, 34
HpyCH4V	TGCA	5 cut(s)	32, 208, 214, 263, 304
HpySE526I	ACGT	2 cut(s)	10, 34
Hsp92II	CATG	1 cut(s)	56
LpnPI	CCDG	3 cut(s)	116, 308, 320
Lsp1109I	GCAGC	2 cut(s)	198, 220
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	3 cut(s)	339, 362, 414
MaeII	ACGT	2 cut(s)	10, 34
MaeIII	GTNAC	1 cut(s)	343
MboII	GAAGA	7 cut(s)	73, 86, 89, 92, 95, 137, 287
MfeI	CAATTG	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	4 cut(s)	69, 182, 203, 351
MnlI	CCTC	2 cut(s)	180, 391
MseI	TTAA	2 cut(s)	174, 195
MspA1I	CMGCKG	1 cut(s)	211
MunI	CAATTG	1 cut(s)	69
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	2 cut(s)	191, 329
PagI	TCATGA	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	210, 213, 327
PmaCI	CACGTG	1 cut(s)	35
PmlI	CACGTG	1 cut(s)	35
Ppu21I	YACGTR	2 cut(s)	11, 35
PpuMI	RGGWCCY	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	189
PspCI	CACGTG	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	191, 329
PspPI	GGNCC	3 cut(s)	158, 189, 327
PspPPI	RGGWCCY	1 cut(s)	189
PvuII	CAGCTG	1 cut(s)	211
RsaI	GTAC	3 cut(s)	9, 149, 419
RsaNI	GTAC	3 cut(s)	8, 148, 418
SaqAI	TTAA	2 cut(s)	174, 195
SatI	GCNGC	3 cut(s)	209, 212, 326
Sau96I	GGNCC	3 cut(s)	158, 189, 327
SduI	GDGCHC	1 cut(s)	34
SfaNI	GCATC	1 cut(s)	313
SinI	GGWCC	1 cut(s)	189
SnaBI	TACGTA	1 cut(s)	11
Sse9I	AATT	4 cut(s)	69, 182, 203, 351
SsiI	CCGC	1 cut(s)	325
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	3 cut(s)	339, 362, 414
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	1 cut(s)	147
TaiI	ACGT	2 cut(s)	13, 37
TasI	AATT	4 cut(s)	69, 182, 203, 351
TauI	GCSGC	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	174, 195
Tru9I	TTAA	2 cut(s)	174, 195
TseI	GCWGC	2 cut(s)	208, 211
VneI	GTGCAC	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	189
XbaI	TCTAGA	1 cut(s)	361
XmaJI	CCTAGG	1 cut(s)	413
XspI	CTAG	3 cut(s)	339, 362, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.