Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002527

Physical Location & Seq

Genomic Coordinates Reverse (-)

25440993 .. 25443857

Gene Structure 2865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G266300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCTACAACGACATATCCACCACCACCACCGTATTATAAGCTCTACAAAGATTACTTGCAAGATCCCAAATCAGCTCCGGAGCTGCCCCCTGAAGGGACATACATTTGCTATGGTGGCAATTACACAACTGATGACATTCTTCCGAGCTTGGAAGATCAGGGAGTGCGTCAACTGTATCCAAAAGGCCCAAACATTGCTATGCCTCCCTCCATTCCAGTTTTAATTATTTATTTTAAGAAGGAACTGAGGTCACTTAACAGAGAATTGCAGCTGCACATTTTGGAGCTGGCTGATATTCTTGTAGAGAGACCATCACAGTACGCGAGGAGTGTGGAAGATATATCTCTTATCTTCAAGAACTTGCATGATCTTCTCAACTCATTGCGTCCCCATCAAGCTAGGGCAACGTTAATTCACATTCTAGAACTTCAGATACAACGTCGTAAACAAGCTGTGAAGGATATAAAGAGGAGGAGAGAAGAAGCACAGAGACTTCTCAAGGACTATATTGGAACGTTGGAGGACACCGGCGCATCTTTTGTGCTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

185

Amino Acids

21.26

Weight (kDa)

8.53

Isoelectric Point (pI)

70.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03220 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500 AT5G03500
fragaria_vesca	FvH4_6g21430
malus_domestica	MD12G1050700.v1.1 MD14G1049500.v1.1
prunus_persica	Prupe.1G035300_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G181600_v2.0.a1 Prupe.1G300700_v2.0.a1 Prupe.1G547000_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.2G085900_v2.0.a1 Prupe.3G021700_v2.0.a1 Prupe.6G266300_v2.0.a1 Prupe.7G024200_v2.0.a1 Prupe.7G086000_v2.0.a1 Prupe.8G249100_v2.0.a1
pyrus_communis	pycom14g04050
rosa_chinensis	RchiOBHm_Chr3g0478001 RchiOBHm_Chr4g0406251
rosa_laevigata	RLG00000008785
rosa_multiflora	Rmu_sc0008653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00350990 Rroxscaffold_6G00403530
rosa_rugosa	Rorug04G0067200 Rorug04G0067200
rosa_samantha	Rh3BG249000 Rh3CG244400 Rh4AG136700 Rh4BG134200 Rh4CG144900 Rh4DG131400
rosa_wichuraiana	Rw3G019660 Rw4G011080 Rw4G011220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
AccII	CGCG	1 cut(s)	326
AccIII	TCCGGA	1 cut(s)	79
AclI	AACGTT	2 cut(s)	410, 518
AclWI	GGATC	1 cut(s)	59
AcuI	CTGAAG	2 cut(s)	114, 416
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	95, 96
AgsI	TTSAA	1 cut(s)	358
AluBI	AGCT	8 cut(s)	43, 77, 85, 150, 274, 289, 401, 455
AluI	AGCT	8 cut(s)	43, 77, 85, 150, 274, 289, 401, 455
Alw26I	GTCTC	2 cut(s)	304, 487
AlwI	GGATC	1 cut(s)	59
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	3 cut(s)	85, 271, 274
AspLEI	GCGC	1 cut(s)	536
AspS9I	GGNCC	1 cut(s)	188
BbvI	GCAGC	3 cut(s)	72, 261, 283
BccI	CCATC	2 cut(s)	322, 402
BciVI	GTATCC	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	304, 487
BfaI	CTAG	2 cut(s)	402, 425
BfuI	GTATCC	1 cut(s)	189
BisI	GCNGC	3 cut(s)	86, 272, 275
BlsI	GCNGC	3 cut(s)	87, 273, 276
BmgT120I	GGNCC	1 cut(s)	188
BmsI	GCATC	1 cut(s)	545
BpuEI	CTTGAG	1 cut(s)	485
BsaI	GGTCTC	1 cut(s)	304
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 96
Bse118I	RCCGGY	1 cut(s)	530
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	2 cut(s)	195, 383
BseAI	TCCGGA	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	95, 96
BseMI	GCAATG	2 cut(s)	195, 383
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	3 cut(s)	343, 487, 490
BseXI	GCAGC	3 cut(s)	72, 261, 283
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	80, 531
BslFI	GGGAC	2 cut(s)	112, 375
BslI	CCNNNNNNNGG	2 cut(s)	95, 96
BsmAI	GTCTC	2 cut(s)	304, 487
BsmFI	GGGAC	2 cut(s)	112, 375
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	304
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	3 cut(s)	64, 157, 370
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	240
BspEI	TCCGGA	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	326
BspPI	GGATC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	304
BsrDI	GCAATG	2 cut(s)	195, 383
BsrFI	RCCGGY	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	530
BssMI	GATC	3 cut(s)	64, 157, 370
Bst4CI	ACNGT	3 cut(s)	33, 177, 321
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	248
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	3 cut(s)	67, 160, 373
BstMAI	GTCTC	2 cut(s)	304, 487
BstMBI	GATC	3 cut(s)	64, 157, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	72, 261, 283
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	291
CfoI	GCGC	1 cut(s)	536
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	188
CseI	GACGC	2 cut(s)	158, 377
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	1 cut(s)	368
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	3 cut(s)	66, 159, 372
DpnII	GATC	3 cut(s)	64, 157, 370
Eco31I	GGTCTC	1 cut(s)	304
Eco57I	CTGAAG	2 cut(s)	114, 416
FaeI	CATG	1 cut(s)	371
FaiI	YATR	9 cut(s)	16, 39, 103, 114, 203, 344, 369, 467, 510
FaqI	GGGAC	2 cut(s)	112, 375
FatI	CATG	1 cut(s)	367
Fnu4HI	GCNGC	3 cut(s)	86, 272, 275
Fsp4HI	GCNGC	3 cut(s)	86, 272, 275
FspBI	CTAG	2 cut(s)	402, 425
GlaI	GCGC	1 cut(s)	535
GluI	GCNGC	3 cut(s)	86, 272, 275
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	2 cut(s)	80, 531
HgaI	GACGC	2 cut(s)	158, 377
HhaI	GCGC	1 cut(s)	536
Hin1II	CATG	1 cut(s)	371
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HincII	GTYRAC	1 cut(s)	173
HindII	GTYRAC	1 cut(s)	173
HpaII	CCGG	2 cut(s)	80, 531
Hpy166II	GTNNAC	2 cut(s)	173, 449
Hpy188I	TCNGA	2 cut(s)	147, 435
Hpy188III	TCNNGA	3 cut(s)	80, 358, 425
Hpy8I	GTNNAC	2 cut(s)	173, 449
Hpy99I	CGWCG	1 cut(s)	447
HpyAV	CCTTC	3 cut(s)	89, 235, 454
HpyCH4III	ACNGT	3 cut(s)	33, 177, 321
HpyCH4IV	ACGT	3 cut(s)	410, 442, 518
HpyCH4V	TGCA	4 cut(s)	61, 271, 277, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	248
HpySE526I	ACGT	3 cut(s)	410, 442, 518
Hsp92II	CATG	1 cut(s)	371
HspAI	GCGC	1 cut(s)	534
Kpn2I	TCCGGA	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	64, 157, 370
LmnI	GCTCC	3 cut(s)	82, 82, 286
LpnPI	CCDG	6 cut(s)	93, 105, 146, 231, 275, 544
Lsp1109I	GCAGC	3 cut(s)	72, 261, 283
LweI	GCATC	1 cut(s)	545
MaeI	CTAG	2 cut(s)	402, 425
MaeII	ACGT	3 cut(s)	410, 442, 518
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	3 cut(s)	66, 159, 372
MboI	GATC	3 cut(s)	64, 157, 370
MboII	GAAGA	6 cut(s)	134, 167, 346, 350, 365, 494
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	4 cut(s)	121, 225, 266, 414
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	7 cut(s)	216, 220, 243, 321, 465, 468, 517
MroI	TCCGGA	1 cut(s)	79
MseI	TTAA	4 cut(s)	224, 237, 258, 413
MslI	CAYNNNNRTG	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	274
MspI	CCGG	2 cut(s)	80, 531
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	117
NdeII	GATC	3 cut(s)	64, 157, 370
NlaIII	CATG	1 cut(s)	371
NmuCI	GTSAC	1 cut(s)	252
PkrI	GCNGC	3 cut(s)	87, 273, 276
PsiI	TTATAA	1 cut(s)	39
Psp1406I	AACGTT	2 cut(s)	410, 518
PspPI	GGNCC	1 cut(s)	188
PsrI	GAACNNNNNNTAC	2 cut(s)	420, 452
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	274
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	4 cut(s)	224, 237, 258, 413
SatI	GCNGC	3 cut(s)	86, 272, 275
Sau3AI	GATC	3 cut(s)	64, 157, 370
Sau96I	GGNCC	1 cut(s)	188
SfaNI	GCATC	1 cut(s)	545
SgrAI	CRCCGGYG	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	4 cut(s)	121, 225, 266, 414
SspMI	CTAG	2 cut(s)	402, 425
TaaI	ACNGT	3 cut(s)	33, 177, 321
TaiI	ACGT	3 cut(s)	413, 445, 521
TasI	AATT	4 cut(s)	121, 225, 266, 414
Tru1I	TTAA	4 cut(s)	224, 237, 258, 413
Tru9I	TTAA	4 cut(s)	224, 237, 258, 413
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	3 cut(s)	85, 271, 274
Tsp45I	GTSAC	1 cut(s)	252
XbaI	TCTAGA	1 cut(s)	424
XspI	CTAG	2 cut(s)	402, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.