Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006623

Physical Location & Seq

Genomic Coordinates Reverse (-)

1121800 .. 1128144

Gene Structure 6345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04130.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2199 bp

ATGGCGCTTCTTCAGAGAGCTTCTTATCTGCGTCTCTATTATTTACGGCTCATGGGTTCTCGACCTCGTCTCTTCTCTAGCTCTCTCTCTCCTGCTCTTCACCGTCACAGCTCGACGCTCTCCTCGCCTCCATTTTCCTCTCCAAGTCCCAGTTTCAGGTTAAAGTTTCAGTTAACCAGTGTTTTGAGTCAAAGACTGATACAACGAAATGCTATTTCATCGAGGTTCTTGTCTACTGAGGCTTCCCAAGAGACTACCACATCTAAGGGTTACAGTTCTGAACAGATTCAAGTGCTGGAAGGCTTAGACCCTGTAAGAAAACGTCCAGGAATGTATATCGGAAGCACTGGATCTCGTGGTTTGCATCATTTGGTTTATGAGATACTTGACAACGCAATTGATGAGGCTCAAGCTGGTTATGCCTCAAAGGTTGATGTCGTCCTACATGCAGATGGCTCAGTTAGTGTTGTGGACAATGGGCGTGGGATACCCACGGATTTGCATCCTGCGACAAAAAAGTCTTCCCTGGAGACTGTGCTTACGGTTTTACATGCGGGTGGCAAGTTTGGTGGCACGAGTAGTGGCTACAGTGTGTCTGGTGGATTACATGGTGTCGGTTTATCAGTAGTAAATGCTTTGTCTGAGGCTCTGGAGGTCTCGGTTTGGAGAGATGGGATGGAGCATAAGCAAAATTATTCTCGTGGAAAGCCCATAACTACACTTACATGTCGCGTCCTCCCCCTAGAGTCAAAGGGGACTAAAGGGACAAGCATCAGGTTTTGGCCTGACAAAGAAGTTTTCACAACTGCAATCGAGTTCGACCATAACACCATTGCTGGACGAATTAGGGAGCTTGCATTTTTGAATCCAAAGGTTACCATCTCTTTAAAAAAGGAGGATGATGATCCTGAAAAGACCCAATATAGTGAATACTCTTTTGCTGGAGGATTAACTGAATATGTTAGTTGGCTAAATACTGATAAGAATCCAATTCATGACGTGCTGGGTTTCAGGAGAGAGATAAATGGTGCCACCGTGGACGTTGCCCTTCAATGGTGCTCAGATGCATATTCAGACACAATGCTGGGATATGCCAATAGCATTCGCACTATTGATGGTGGAACACACATCGAAGGTGTGAAAGCTTCATTAACAAGGACTCTTAATACCCTTGCAAAAAAGTCAAAGACTGTTAAGGAGAAAGATATTAGCTTAAGTGGGGAACATGTTAGAGAGGGATTGACCTGTATCGTCTCAGTCAAGGTTCCTAATCCTGAGTTTGAAGGTCAAACAAAGACAAGATTAGGAAATCCAGAGGTGAGAAAAATTGTTGACCAATCAGTTCAGGAATATCTCACAGAGTTTTTGGAATTGCATCCAGATATTCTTGAGAGCATTATTTCCAAATCCCTTAACGCTTACAAGGCTGCTTTGGCTGCCAAGAGGGCAAGGGAGTTGGTCAGGTCGAAAAGCGTTTTGAAGTCATCATCACTTCCTGGGAAACTGGCTGATTGCTCATCAACAGATCCTGAAGTATCTGAAATTTTTATAGTTGAAGGAGATTCTGCTGGTGGCAGTGCGAAACAGGGCCGTGATAGACGATTTCAGGCAATTCTTCCTTTGAGAGGTAAAATTCTGAACATTGAAAGAAAGGATGAAGCAGCCATGTATAAGAATGAAGAAATTCAAAATCTAATTCTTGGCCTTGGCCTCGGTGTGAAGGGAGAAGATTTTAAGAAAGAAAATTTGCGGTACCATAAGATAATCATCTTAACAGATGCAGATGTTGATGGTGCACATATCCGGACACTTCTGTTGACCTTTTTCTTCAGATATCAGAGAGCCTTGTTTGATGCAGGTTGCATATATGTCGGTGTTCCTCCTCTGTTCAAGGTTGAAAGGGGAAAGAATGCACAATATTGCTATGATGATGCAGACCTTAAAAAGATCACCAGTAACTTCCCTGCAAACGCATCCTACAACATTCAAAGGTTCAAAGGTTTGGGAGAGATGATGCCTGAACAGCTTTGGGAAACGACAATGAATCCAGAAACAAGGATACTAAAGCAACTTGTTGTCGATGATATAGCGGAAGCAAACATGACATTCTCATCTCTTATGGGTGCTCGGGTCGATGTCCGGAAAGAACTCATCAAAAATGCTGCAACTAGGATCAACCTGCAGCGTCTAGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003916 GO:0003918 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008094 GO:0008150 GO:0008152 GO:0009295 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051276 GO:0061505 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseB DNA_gyraseB_C HATPase_c Toprim

Protein Analysis

732

Amino Acids

81.05

Weight (kDa)

8.84

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	118 - 264	1.7e-18	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_gyraseB	PF00204	316 - 485	3.3e-56	DNA gyrase B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10270 AT3G10270 AT5G04130
fragaria_vesca	FvH4_6g25390 FvH4_6g25390 FvH4_6g25390
malus_domestica	MD12G1095800.v1.1 MD14G1090600.v1.1
prunus_persica	Prupe.7G033800_v2.0.a1
pyrus_communis	pycom12g08270
rosa_chinensis	RchiOBHm_Chr2g0125831
rosa_laevigata	RLG00000018881
rosa_multiflora	Rmu_co8103446.1_g000001 Rmu_sc0009079.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117620 Rroxscaffold_2G00117680 Rroxscaffold_2G00125340 Rroxscaffold_2G00125370 Rroxscaffold_3G00238600 Rroxscaffold_4G00318520 Rroxscaffold_4G00324150 Rroxscaffold_5G00337460
rosa_rugosa	Rorug02G0259400
rosa_samantha	Rh2AG317700 Rh2BG326100
rosa_wichuraiana	Rw2G025700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	517
Acc36I	ACCTGC	2 cut(s)	1847, 2187
Acc65I	GGTACC	1 cut(s)	1752
AccB1I	GGYRCC	2 cut(s)	1028, 1752
AccI	GTMKAC	1 cut(s)	233
AccII	CGCG	1 cut(s)	732
AccIII	TCCGGA	2 cut(s)	1803, 2139
AciI	CCGC	3 cut(s)	554, 1750, 2090
AclWI	GGATC	4 cut(s)	358, 899, 1520, 2180
AcsI	RAATTY	4 cut(s)	1542, 1632, 1683, 1744
AcuI	CTGAAG	2 cut(s)	1551, 1813
AfaI	GTAC	1 cut(s)	1754
AfiI	CCNNNNNNNGG	3 cut(s)	156, 1053, 1625
AflII	CTTAAG	1 cut(s)	1213
AflIII	ACRYGT	2 cut(s)	725, 1225
AjiI	CACGTC	1 cut(s)	1000
AjnI	CCWGG	3 cut(s)	325, 525, 1495
AluBI	AGCT	8 cut(s)	20, 81, 111, 413, 853, 1145, 1212, 2026
AluI	AGCT	8 cut(s)	20, 81, 111, 413, 853, 1145, 1212, 2026
Alw21I	GWGCWC	3 cut(s)	1061, 1798, 2128
Alw26I	GTCTC	6 cut(s)	38, 74, 245, 524, 661, 1258
Alw44I	GTGCAC	1 cut(s)	1794
AlwI	GGATC	4 cut(s)	358, 899, 1520, 2180
AlwNI	CAGNNNCTG	1 cut(s)	1529
Ama87I	CYCGRG	1 cut(s)	2127
Aor13HI	TCCGGA	2 cut(s)	1803, 2139
AoxI	GGCC	4 cut(s)	782, 1588, 1702, 1708
ApaLI	GTGCAC	1 cut(s)	1794
ApeKI	GCWGC	5 cut(s)	1427, 1436, 1661, 2162, 2182
ApoI	RAATTY	4 cut(s)	1542, 1632, 1683, 1744
Asp700I	GAANNNNTTC	2 cut(s)	285, 1683
Asp718I	GGTACC	1 cut(s)	1752
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	1588
AsuHPI	GGTGA	3 cut(s)	92, 1330, 1942
AvaI	CYCGRG	1 cut(s)	2127
BaeGI	GKGCMC	1 cut(s)	1798
BanI	GGYRCC	2 cut(s)	1028, 1752
BauI	CACGAG	3 cut(s)	354, 574, 699
BbsI	GAAGAC	1 cut(s)	513
Bbv12I	GWGCWC	3 cut(s)	1061, 1798, 2128
BbvI	GCAGC	5 cut(s)	1414, 1423, 1673, 2149, 2194
BccI	CCATC	6 cut(s)	446, 665, 670, 887, 1109, 1784
BceAI	ACGGC	2 cut(s)	62, 1575
BcgI	CGANNNNNNTGC	2 cut(s)	1852, 1886
BciT130I	CCWGG	3 cut(s)	327, 527, 1497
BciVI	GTATCC	2 cut(s)	480, 2052
BcoDI	GTCTC	6 cut(s)	38, 74, 245, 524, 661, 1258
BfaI	CTAG	4 cut(s)	78, 743, 2169, 2189
BfmI	CTRYAG	2 cut(s)	586, 2180
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	1213
BfuAI	ACCTGC	2 cut(s)	1847, 2187
BfuI	GTATCC	2 cut(s)	480, 2052
BglI	GCCNNNNNGGC	1 cut(s)	1445
BisI	GCNGC	5 cut(s)	1428, 1437, 1662, 2163, 2183
BlsI	GCNGC	5 cut(s)	1429, 1438, 1663, 2164, 2184
Bme1390I	CCNGG	3 cut(s)	327, 527, 1497
BmeT110I	CYCGRG	1 cut(s)	2127
BmgBI	CACGTC	1 cut(s)	1000
BmgT120I	GGNCC	1 cut(s)	1588
BmiI	GGNNCC	3 cut(s)	1030, 1266, 1754
BmrFI	CCNGG	3 cut(s)	327, 527, 1497
BmrI	ACTGGG	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	513
BpmI	CTGGAG	3 cut(s)	548, 671, 963
BpuEI	CTTGAG	2 cut(s)	393, 1409
BsaBI	GATNNNNATC	4 cut(s)	501, 903, 984, 1766
BsaI	GGTCTC	1 cut(s)	661
BsaJI	CCNNGG	6 cut(s)	492, 525, 1035, 1496, 1705, 1711
BsaWI	WCCGGW	2 cut(s)	1803, 2139
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 1053, 1625
Bse1I	ACTGG	5 cut(s)	150, 177, 352, 1509, 1953
Bse3DI	GCAATG	1 cut(s)	831
Bse8I	GATNNNNATC	4 cut(s)	501, 903, 984, 1766
BseAI	TCCGGA	2 cut(s)	1803, 2139
BseBI	CCWGG	3 cut(s)	327, 527, 1497
BseDI	CCNNGG	6 cut(s)	492, 525, 1035, 1496, 1705, 1711
BseGI	GGATG	6 cut(s)	502, 681, 904, 1375, 1660, 1973
BseJI	GATNNNNATC	4 cut(s)	501, 903, 984, 1766
BseLI	CCNNNNNNNGG	3 cut(s)	156, 1053, 1625
BseMI	GCAATG	1 cut(s)	831
BseMII	CTCAG	6 cut(s)	228, 471, 633, 1074, 1266, 1269
BseNI	ACTGG	5 cut(s)	150, 177, 352, 1509, 1953
BseRI	GAGGAG	2 cut(s)	112, 1872
BseSI	GKGCMC	1 cut(s)	1798
BseXI	GCAGC	5 cut(s)	1414, 1423, 1673, 2149, 2194
BseYI	CCCAGC	2 cut(s)	1003, 1084
Bsh1236I	CGCG	1 cut(s)	732
BshFI	GGCC	4 cut(s)	784, 1590, 1704, 1710
BshNI	GGYRCC	2 cut(s)	1028, 1752
BsiHKAI	GWGCWC	3 cut(s)	1061, 1798, 2128
BsiHKCI	CYCGRG	1 cut(s)	2127
BsiSI	CCGG	2 cut(s)	1804, 2140
BslFI	GGGAC	3 cut(s)	132, 769, 778
BslI	CCNNNNNNNGG	3 cut(s)	156, 1053, 1625
BsmAI	GTCTC	6 cut(s)	38, 74, 245, 524, 661, 1258
BsmBI	CGTCTC	3 cut(s)	38, 74, 1258
BsmFI	GGGAC	3 cut(s)	132, 769, 778
BsmI	GAATGC	2 cut(s)	1101, 1915
BsnI	GGCC	4 cut(s)	784, 1590, 1704, 1710
Bso31I	GGTCTC	1 cut(s)	661
BsoBI	CYCGRG	1 cut(s)	2127
Bsp1286I	GDGCHC	3 cut(s)	1061, 1798, 2128
Bsp13I	TCCGGA	2 cut(s)	1803, 2139
Bsp143I	GATC	5 cut(s)	350, 904, 1525, 1947, 2172
BspACI	CCGC	3 cut(s)	554, 1750, 2090
BspANI	GGCC	4 cut(s)	784, 1590, 1704, 1710
BspCNI	CTCAG	6 cut(s)	229, 470, 634, 1073, 1267, 1268
BspEI	TCCGGA	2 cut(s)	1803, 2139
BspFNI	CGCG	1 cut(s)	732
BspHI	TCATGA	1 cut(s)	994
BspLI	GGNNCC	3 cut(s)	1030, 1266, 1754
BspMAI	CTGCAG	1 cut(s)	2184
BspMI	ACCTGC	2 cut(s)	1847, 2187
BspPI	GGATC	4 cut(s)	358, 899, 1520, 2180
BspQI	GCTCTTC	1 cut(s)	102
BspT107I	GGYRCC	2 cut(s)	1028, 1752
BspTI	CTTAAG	1 cut(s)	1213
BspTNI	GGTCTC	1 cut(s)	661
BsrDI	GCAATG	1 cut(s)	831
BsrI	ACTGG	5 cut(s)	150, 177, 352, 1509, 1953
BssECI	CCNNGG	6 cut(s)	492, 525, 1035, 1496, 1705, 1711
BssMI	GATC	5 cut(s)	350, 904, 1525, 1947, 2172
BssSI	CACGAG	3 cut(s)	354, 574, 699
BssT1I	CCWWGG	1 cut(s)	1705
Bst2BI	CACGAG	3 cut(s)	354, 574, 699
Bst2UI	CCWGG	3 cut(s)	327, 527, 1497
Bst4CI	ACNGT	7 cut(s)	104, 275, 535, 544, 590, 1036, 1192
Bst6I	CTCTTC	2 cut(s)	77, 102
BstAFI	CTTAAG	1 cut(s)	1213
BstC8I	GCNNGC	1 cut(s)	855
BstDEI	CTNAG	8 cut(s)	237, 264, 304, 457, 642, 1060, 1255, 1275
BstDSI	CCRYGG	2 cut(s)	492, 1035
BstEII	GGTNACC	1 cut(s)	874
BstENI	CCTNNNNNAGG	1 cut(s)	1623
BstF5I	GGATG	6 cut(s)	502, 681, 904, 1375, 1660, 1973
BstFNI	CGCG	1 cut(s)	732
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	5 cut(s)	353, 907, 1528, 1950, 2175
BstMAI	GTCTC	6 cut(s)	38, 74, 245, 524, 661, 1258
BstMBI	GATC	5 cut(s)	350, 904, 1525, 1947, 2172
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 419, 1424, 1433, 1436, 1445, 2023
BstNI	CCWGG	3 cut(s)	327, 527, 1497
BstNSI	RCATGY	4 cut(s)	449, 554, 729, 1229
BstPI	GGTNACC	1 cut(s)	874
BstSCI	CCNGG	3 cut(s)	325, 525, 1495
BstSFI	CTRYAG	2 cut(s)	586, 2180
BstSLI	GKGCMC	1 cut(s)	1798
BstUI	CGCG	1 cut(s)	732
BstV1I	GCAGC	5 cut(s)	1414, 1423, 1673, 2149, 2194
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	2 cut(s)	350, 1525
BstYI	RGATCY	2 cut(s)	350, 1525
BsuI	GTATCC	2 cut(s)	480, 2052
BsuRI	GGCC	4 cut(s)	784, 1590, 1704, 1710
BtgI	CCRYGG	2 cut(s)	492, 1035
BtrI	CACGTC	1 cut(s)	1000
BtsCI	GGATG	6 cut(s)	502, 681, 904, 1375, 1660, 1973
BtsI	GCAGTG	1 cut(s)	1582
BtsIMutI	CAGTG	4 cut(s)	184, 345, 595, 1582
BveI	ACCTGC	2 cut(s)	1847, 2187
Cac8I	GCNNGC	1 cut(s)	855
CaiI	CAGNNNCTG	1 cut(s)	1529
CciI	TCATGA	1 cut(s)	994
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	1588
CseI	GACGC	4 cut(s)	20, 124, 721, 2174
Csp6I	GTAC	1 cut(s)	1753
CspCI	CAANNNNNGTGG	4 cut(s)	463, 498, 550, 585
CviAII	CATG	9 cut(s)	52, 446, 551, 608, 726, 995, 1226, 1666, 2101
CviQI	GTAC	1 cut(s)	1753
DdeI	CTNAG	8 cut(s)	237, 264, 304, 457, 642, 1060, 1255, 1275
DpnI	GATC	5 cut(s)	352, 906, 1527, 1949, 2174
DpnII	GATC	5 cut(s)	350, 904, 1525, 1947, 2172
DraI	TTTAAA	1 cut(s)	888
DrdI	GACNNNNNNGTC	1 cut(s)	517
DseDI	GACNNNNNNGTC	1 cut(s)	517
Eam1104I	CTCTTC	2 cut(s)	77, 102
EarI	CTCTTC	2 cut(s)	77, 102
Eco130I	CCWWGG	1 cut(s)	1705
Eco31I	GGTCTC	1 cut(s)	661
Eco32I	GATATC	1 cut(s)	1835
Eco57I	CTGAAG	2 cut(s)	1551, 1813
Eco88I	CYCGRG	1 cut(s)	2127
Eco91I	GGTNACC	1 cut(s)	874
EcoNI	CCTNNNNNAGG	1 cut(s)	1623
EcoO65I	GGTNACC	1 cut(s)	874
EcoRII	CCWGG	3 cut(s)	325, 525, 1495
EcoRV	GATATC	1 cut(s)	1835
EcoT14I	CCWWGG	1 cut(s)	1705
EcoT22I	ATGCAT	1 cut(s)	1069
ErhI	CCWWGG	1 cut(s)	1705
Esp3I	CGTCTC	3 cut(s)	38, 74, 1258
FaeI	CATG	9 cut(s)	55, 449, 554, 611, 729, 998, 1229, 1669, 2104
FaqI	GGGAC	3 cut(s)	132, 769, 778
FatI	CATG	9 cut(s)	51, 445, 550, 607, 725, 994, 1225, 1665, 2100
FauI	CCCGC	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	233
Fnu4HI	GCNGC	5 cut(s)	1428, 1437, 1662, 2163, 2183
FokI	GGATG	6 cut(s)	489, 688, 911, 1362, 1667, 1960
Fsp4HI	GCNGC	5 cut(s)	1428, 1437, 1662, 2163, 2183
FspBI	CTAG	4 cut(s)	78, 743, 2169, 2189
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	5 cut(s)	1428, 1437, 1662, 2163, 2183
GsaI	CCCAGC	2 cut(s)	1007, 1088
GsuI	CTGGAG	3 cut(s)	548, 671, 963
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	4 cut(s)	784, 1590, 1704, 1710
HapII	CCGG	2 cut(s)	1804, 2140
HgaI	GACGC	4 cut(s)	20, 124, 721, 2174
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	9 cut(s)	55, 449, 554, 611, 729, 998, 1229, 1669, 2104
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	3 cut(s)	174, 1333, 1818
HindII	GTYRAC	3 cut(s)	174, 1333, 1818
HindIII	AAGCTT	1 cut(s)	1143
HinfI	GANTC	8 cut(s)	187, 286, 746, 865, 985, 1159, 1562, 2044
HpaI	GTTAAC	1 cut(s)	174
HpaII	CCGG	2 cut(s)	1804, 2140
HphI	GGTGA	3 cut(s)	92, 1330, 1942
Hpy166II	GTNNAC	7 cut(s)	174, 234, 472, 1039, 1333, 1796, 1818
Hpy8I	GTNNAC	7 cut(s)	174, 234, 472, 1039, 1333, 1796, 1818
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	6 cut(s)	293, 1058, 1127, 1277, 1550, 1714
HpyCH4III	ACNGT	7 cut(s)	104, 275, 535, 544, 590, 1036, 1192
HpyCH4IV	ACGT	3 cut(s)	322, 999, 1041
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 419, 1424, 1433, 1436, 1445, 2023
HpyF3I	CTNAG	8 cut(s)	237, 264, 304, 457, 642, 1060, 1255, 1275
HpySE526I	ACGT	3 cut(s)	322, 999, 1041
Hsp92II	CATG	9 cut(s)	55, 449, 554, 611, 729, 998, 1229, 1669, 2104
HspAI	GCGC	1 cut(s)	5
Kpn2I	TCCGGA	2 cut(s)	1803, 2139
KpnI	GGTACC	1 cut(s)	1756
KspAI	GTTAAC	1 cut(s)	174
Kzo9I	GATC	5 cut(s)	350, 904, 1525, 1947, 2172
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	2 cut(s)	679, 850
Lsp1109I	GCAGC	5 cut(s)	1414, 1423, 1673, 2149, 2194
MaeI	CTAG	4 cut(s)	78, 743, 2169, 2189
MaeII	ACGT	3 cut(s)	322, 999, 1041
MaeIII	GTNAC	4 cut(s)	104, 269, 874, 1955
MalI	GATC	5 cut(s)	352, 906, 1527, 1949, 2174
MboI	GATC	5 cut(s)	350, 904, 1525, 1947, 2172
MboII	GAAGA	7 cut(s)	64, 89, 513, 1607, 1691, 1739, 1819
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	2 cut(s)	350, 1525
MhlI	GDGCHC	3 cut(s)	1061, 1798, 2128
MlyI	GAGTC	3 cut(s)	196, 755, 1153
Mph1103I	ATGCAT	1 cut(s)	1069
MroI	TCCGGA	2 cut(s)	1803, 2139
MroXI	GAANNNNTTC	2 cut(s)	285, 1683
MslI	CAYNNNNRTG	3 cut(s)	450, 555, 724
MspCI	CTTAAG	1 cut(s)	1213
MspI	CCGG	2 cut(s)	1804, 2140
MspR9I	CCNGG	3 cut(s)	327, 527, 1497
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	2 cut(s)	1101, 1915
MvaI	CCWGG	3 cut(s)	327, 527, 1497
MvnI	CGCG	1 cut(s)	732
MwoI	GCNNNNNNNGC	7 cut(s)	124, 419, 1424, 1433, 1436, 1445, 2023
NdeII	GATC	5 cut(s)	350, 904, 1525, 1947, 2172
NlaIII	CATG	9 cut(s)	55, 449, 554, 611, 729, 998, 1229, 1669, 2104
NlaIV	GGNNCC	3 cut(s)	1030, 1266, 1754
NmuCI	GTSAC	1 cut(s)	104
NsiI	ATGCAT	1 cut(s)	1069
NspI	RCATGY	4 cut(s)	449, 554, 729, 1229
PagI	TCATGA	1 cut(s)	994
PciI	ACATGT	2 cut(s)	725, 1225
PciSI	GCTCTTC	1 cut(s)	102
PctI	GAATGC	2 cut(s)	1101, 1915
PdmI	GAANNNNTTC	2 cut(s)	285, 1683
PfeI	GAWTC	5 cut(s)	286, 865, 985, 1562, 2044
PflFI	GACNNNGTC	1 cut(s)	66
PfoI	TCCNGGA	1 cut(s)	325
PkrI	GCNGC	5 cut(s)	1429, 1438, 1663, 2164, 2184
PleI	GAGTC	3 cut(s)	195, 754, 1153
PpsI	GAGTC	3 cut(s)	195, 754, 1153
PscI	ACATGT	2 cut(s)	725, 1225
Psp6I	CCWGG	3 cut(s)	325, 525, 1495
PspEI	GGTNACC	1 cut(s)	874
PspFI	CCCAGC	2 cut(s)	1003, 1084
PspGI	CCWGG	3 cut(s)	325, 525, 1495
PspN4I	GGNNCC	3 cut(s)	1030, 1266, 1754
PspPI	GGNCC	1 cut(s)	1588
PstI	CTGCAG	1 cut(s)	2184
PstNI	CAGNNNCTG	1 cut(s)	1529
PsuI	RGATCY	2 cut(s)	350, 1525
PsyI	GACNNNGTC	1 cut(s)	66
RsaI	GTAC	1 cut(s)	1754
RsaNI	GTAC	1 cut(s)	1753
RseI	CAYNNNNRTG	3 cut(s)	450, 555, 724
SapI	GCTCTTC	1 cut(s)	102
SatI	GCNGC	5 cut(s)	1428, 1437, 1662, 2163, 2183
Sau3AI	GATC	5 cut(s)	350, 904, 1525, 1947, 2172
Sau96I	GGNCC	1 cut(s)	1588
SchI	GAGTC	3 cut(s)	196, 755, 1153
ScrFI	CCNGG	3 cut(s)	327, 527, 1497
SduI	GDGCHC	3 cut(s)	1061, 1798, 2128
SfcI	CTRYAG	2 cut(s)	586, 2180
SmiMI	CAYNNNNRTG	3 cut(s)	450, 555, 724
SmlI	CTYRAG	3 cut(s)	408, 1213, 1388
SmoI	CTYRAG	3 cut(s)	408, 1213, 1388
SsiI	CCGC	3 cut(s)	554, 1750, 2090
SspI	AATATT	1 cut(s)	1919
SspMI	CTAG	4 cut(s)	78, 743, 2169, 2189
StyD4I	CCNGG	3 cut(s)	325, 525, 1495
StyI	CCWWGG	1 cut(s)	1705
TaaI	ACNGT	7 cut(s)	104, 275, 535, 544, 590, 1036, 1192
TaiI	ACGT	3 cut(s)	325, 1002, 1044
TaqI	TCGA	9 cut(s)	61, 113, 221, 813, 819, 1131, 1466, 2079, 2133
TfiI	GAWTC	5 cut(s)	286, 865, 985, 1562, 2044
TscAI	CASTG	4 cut(s)	184, 352, 595, 1582
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	5 cut(s)	1427, 1436, 1661, 2162, 2182
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	6 cut(s)	207, 983, 1137, 1671, 1692, 2057
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	4 cut(s)	184, 352, 595, 1582
Tth111I	GACNNNGTC	1 cut(s)	66
Vha464I	CTTAAG	1 cut(s)	1213
VneI	GTGCAC	1 cut(s)	1794
XagI	CCTNNNNNAGG	1 cut(s)	1623
XapI	RAATTY	4 cut(s)	1542, 1632, 1683, 1744
XbaI	TCTAGA	1 cut(s)	2188
XceI	RCATGY	4 cut(s)	449, 554, 729, 1229
XmiI	GTMKAC	1 cut(s)	233
XmnI	GAANNNNTTC	2 cut(s)	285, 1683
XspI	CTAG	4 cut(s)	78, 743, 2169, 2189
Zsp2I	ATGCAT	1 cut(s)	1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.