Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006623

Physical Location & Seq

Genomic Coordinates Forward (+)

55451170 .. 55452044

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00324150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTGTAGTTTCGGTCAAAGTTCCCAATCCGAGTTTGAAGGCCGGACAAAGACTAGGTTGGGAAATCCGAGGTGCGAAGAGTGGTTGATAATTCTCTTCAAGAGTATCTTACGAGAATACTTGGAGTTACACCCCGATGTACTTGGATTCAATCCTTTCCAAGTCCTTAAATGCTCTCAAGGCAGCTCGGCTGCAAAGAGGGCAAGGGAACTAGTCGGACAAAAGAGTGTTTTGTGTTCGTCTTCTCTTCCGGGAAAGCTAGCTGATTTCTCATCAACCAATCCCGAAGAATCTGGTGATCAATGGATTGACTTGGAGGACGATGGTGAATCGTTGATTGAGCTGTTAAGAAGACGCAGCGGGATTAGAGGGTTCGAGGACGGAGATGTCCGAAGTTCGACGGTTAAGGATAACCGCAGTGATTGTGTTCGAGAACGGGAATGTCCGAAGTTCGACGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003916 GO:0003918 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008094 GO:0008150 GO:0008152 GO:0009295 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051276 GO:0061505 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseB DNA_gyraseB_C HATPase_c Toprim

Protein Analysis

153

Amino Acids

17.2

Weight (kDa)

5.18

Isoelectric Point (pI)

60.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10270 AT3G10270 AT5G04130
fragaria_vesca	FvH4_6g25390 FvH4_6g25390 FvH4_6g25390
malus_domestica	MD12G1095800.v1.1 MD14G1090600.v1.1
prunus_persica	Prupe.7G033800_v2.0.a1
pyrus_communis	pycom12g08270
rosa_chinensis	RchiOBHm_Chr2g0125831
rosa_laevigata	RLG00000018881
rosa_multiflora	Rmu_co8103446.1_g000001 Rmu_sc0009079.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117620 Rroxscaffold_2G00117680 Rroxscaffold_2G00125340 Rroxscaffold_2G00125370 Rroxscaffold_3G00238600 Rroxscaffold_4G00318520 Rroxscaffold_4G00324150 Rroxscaffold_5G00337460
rosa_rugosa	Rorug02G0259400
rosa_samantha	Rh2AG317700 Rh2BG326100
rosa_wichuraiana	Rw2G025700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AciI	CCGC	2 cut(s)	360, 415
AfaI	GTAC	1 cut(s)	141
AgsI	TTSAA	3 cut(s)	38, 100, 151
AhlI	ACTAGT	1 cut(s)	211
AluBI	AGCT	4 cut(s)	186, 259, 263, 343
AluI	AGCT	4 cut(s)	186, 259, 263, 343
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	3 cut(s)	183, 191, 357
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	308, 338
AsuNHI	GCTAGC	1 cut(s)	259
BbsI	GAAGAC	2 cut(s)	234, 358
BbvI	GCAGC	3 cut(s)	178, 195, 369
BccI	CCATC	1 cut(s)	317
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	252
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	3 cut(s)	54, 212, 260
BisI	GCNGC	3 cut(s)	184, 192, 358
BlsI	GCNGC	3 cut(s)	185, 193, 359
Bme1390I	CCNGG	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	252
BmtI	GCTAGC	1 cut(s)	263
BpiI	GAAGAC	2 cut(s)	234, 358
BpuEI	CTTGAG	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	178, 195, 369
BshFI	GGCC	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	43, 251
BsnI	GGCC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	2 cut(s)	360, 415
BspANI	GGCC	1 cut(s)	42
BspOI	GCTAGC	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	1 cut(s)	298
Bst4CI	ACNGT	2 cut(s)	403, 458
Bst6I	CTCTTC	3 cut(s)	72, 101, 252
BstC8I	GCNNGC	1 cut(s)	261
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 200
BstSCI	CCNGG	1 cut(s)	250
BstV1I	GCAGC	3 cut(s)	178, 195, 369
BstV2I	GAAGAC	2 cut(s)	234, 358
BsuRI	GGCC	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	261
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	140
CviJI	RGCY	6 cut(s)	42, 186, 191, 259, 263, 343
CviKI_1	RGCY	6 cut(s)	42, 186, 191, 259, 263, 343
CviQI	GTAC	1 cut(s)	140
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
Eam1104I	CTCTTC	3 cut(s)	72, 101, 252
EarI	CTCTTC	3 cut(s)	72, 101, 252
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FauI	CCCGC	1 cut(s)	353
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	184, 192, 358
Fsp4HI	GCNGC	3 cut(s)	184, 192, 358
FspBI	CTAG	3 cut(s)	54, 212, 260
GluI	GCNGC	3 cut(s)	184, 192, 358
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	43, 251
HgaI	GACGC	1 cut(s)	363
HinfI	GANTC	3 cut(s)	147, 290, 329
HpaII	CCGG	2 cut(s)	43, 251
HphI	GGTGA	2 cut(s)	308, 338
Hpy188I	TCNGA	5 cut(s)	31, 69, 218, 392, 447
Hpy188III	TCNNGA	3 cut(s)	100, 284, 431
Hpy99I	CGWCG	2 cut(s)	403, 458
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	403, 458
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 200
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	298
LpnPI	CCDG	3 cut(s)	56, 264, 279
Lsp1109I	GCAGC	3 cut(s)	178, 195, 369
MaeI	CTAG	3 cut(s)	54, 212, 260
MaeIII	GTNAC	1 cut(s)	126
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	6 cut(s)	88, 89, 234, 239, 299, 363
MluCI	AATT	1 cut(s)	90
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	5 cut(s)	63, 192, 310, 362, 370
MseI	TTAA	4 cut(s)	168, 347, 405, 460
MslI	CAYNNNNRTG	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	360
MspI	CCGG	2 cut(s)	43, 251
MspR9I	CCNGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	180, 200
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	298
NheI	GCTAGC	1 cut(s)	259
NmeAIII	GCCGAG	1 cut(s)	167
PfeI	GAWTC	3 cut(s)	147, 290, 329
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	185, 193, 359
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	4 cut(s)	168, 347, 405, 460
SatI	GCNGC	3 cut(s)	184, 192, 358
Sau3AI	GATC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	6 cut(s)	59, 74, 188, 261, 265, 345
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	2 cut(s)	360, 415
SspMI	CTAG	3 cut(s)	54, 212, 260
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	403, 458
TaqI	TCGA	4 cut(s)	375, 398, 430, 453
TasI	AATT	1 cut(s)	90
TatI	WGTACW	1 cut(s)	139
TfiI	GAWTC	3 cut(s)	147, 290, 329
Tru1I	TTAA	4 cut(s)	168, 347, 405, 460
Tru9I	TTAA	4 cut(s)	168, 347, 405, 460
TscAI	CASTG	1 cut(s)	424
TseI	GCWGC	3 cut(s)	183, 191, 357
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	1 cut(s)	424
XspI	CTAG	3 cut(s)	54, 212, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.