Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006623

Physical Location & Seq

Genomic Coordinates Forward (+)

41891100 .. 41904229

Gene Structure 13130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG317700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2196 bp

ATGGCGCTTCTTCTTCTGAGACTGAGAGCTCATTCTCCTAGTCCTCCTTATCTTCTTCGCTTCATGGCCTTACGCTTCATGTCACACTCATGTCTCCACCCTCACTCTTCCTCCCTCTTCTTCAGCCCACCACCACCACCACCCAGGATTGGGCTTCGATTGAAGGACGTTCCTAGCTGCTGTGCTGCGGTTCGAAATGTGAGAGCTTTCATGTCGTCCAGCTCGGTAACCGAGGCTTTTCAAGGAAGCGCTGCTGCCTCCACGGCTTATGGCGCTGATCAGATTCAGGTTTTAGAAGGCTTAGAGGCTGTTAGAAAGAGGCCCGGAATGTATATTGGGGACACCGGATTTCGTGGTCTTCATCATCTGGTTTATGAAATACTAGACAATGCTGTTGATGAGGCTCAAGGCGGATATGCTTCAAAGGTTGAGGTCATTTTACTGGCCGACAATTCTGTCAGCATCACAGACAACGGCCGTGGGATACCTACTGATATGCATCCTGTAACCAAGAAATCTACATTGGAGACTGTGTTGACGGTTTTGCATGCTGGTGGCAAGTTTGGTGGTTCAAGTAGTGGCTATAGTGTGTCTGGTGGATTACATGGTGTGGGTTTATCAGTCGTTAATGCCTTGTCTGAGGCATTAGAAGTTACTATTTGGCGTGATGGAATGGAATACCAGCAAAAGTATTCTCGTGGAAAGCCTGTGACAACTCTCTCTTGTCATGTGCTTCCAATTGAATTTAAAGATAGACAAGGAACACGAATCAGATTCTTGCCTGACAAACAAGTATTTAAAACTCTTAATCAGTTCGACTACCACACAATTGCTGGAAGAATTAGGGAGCTAGCTTTTTTAAACCCTAATCTCATGATCACTCTTAGACAAGAGGATACGGATCCAGAGAAAATTCAGCACAATGAATACTTCTATGCAGGGGGTTTGGTTGAATATGTTAGATGGCTGAATAGTGATAAGAAACCTCTTCATGAAGTGGTGGGTTTCAGAAAAGAAGTAGATGGAATCACTATTAATGTAGCTCTCCAGTGGTGTTCTGATGCATATTCAGATACAGTGCTAGGGTATGCTAATAGCATACGTACTGCTGACGGAGGAACCCATATTGATGGACTGAAAGCTTCGTTAACAAGAACGCTGAATAACCTTGGGAAGAAGTCAAAGCTTATCAAGGATAAAGATATTACCTTAAGTGGTGAGCATGTAAGAGAAGGGCTGACATGTGTAGTTTCAGTCAAAGTTCCCAATCCAGAGTTTGAAGGCCAGACAAAGACTAGGTTGGGAAATCCAGAGGTGCGAAGAGTGGTTGATAATTCTCTTCAAGAGTATCTTACAGAATACTTGGAGTTACATCCTGATGTACTGGATTCAATCCTTTCCAAGTCCTTAAATGCTCTCAAGGCAGCTCTGGCTGCAAAGAGGGCAAGGGAACTAGTCAGACAAAAGAGTGTTTTGCGTTCGTCTTCTCTCCCAGGAAAGCTAGCTGATTGCTCATCAACCAATCCTGAAGAATCTGAAATCTTTATAGTTGAAGGAGATTCAGCTGGAGGAAGTGCAAAGCAAGGTCGTGATAGACGCTTTCAGGCAATTCTTCCACTAAGGGGTAAAATTCTGAACATTGAAAGGAGGGACGAGGCAGCGATGTATAAAAATGAAGAAATTCAAAATCTGATTCTTGGACTTGGACTTGGGGTGAAGGGAGAGGACTTTAAAAAGGAAGCTCTGCGTTACCATAAGATTATCATCTTAACTGATGCTGATGTAGATGGTGCTCACATCCGAACTCTGCTACTGACATTTTTCTTCAGATATCAGAGAGCCTTATTTGATGAGGGTTGCATATATGTTGGTGTTCCACCCTTTTACAAGGTTGAAAGGGGAAAGCAAGCATATTATTGCTATGATGACGCTGAACTTAAAAAGCTTCAGAGTTCCTTCCCTTCAAATGCATCATACAGCATTCAAAGGTTCAAAGGCCTGGGAGAAATGATGCCCACACAATTATGGGAAACAACAATGGATCCTCAGAAAAGGCTGCTGAAACAATTAAGTGTGGATGATGCTGCTGAGGCTAACTTTGTCTTTTCCTCCCTTATGGGTTCTCGGGTGGATTTCCGGAAGGAACTCATTCAAAATGCTGCACGCATGATCAACTTGGATCAGTTAGATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003916 GO:0003918 GO:0005575 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008094 GO:0008150 GO:0008152 GO:0009295 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0061505 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseB DNA_gyraseB_C HATPase_c Toprim

Protein Analysis

731

Amino Acids

81.37

Weight (kDa)

8.48

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	119 - 261	4.5e-17	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_gyraseB	PF00204	315 - 484	2.5e-55	DNA gyrase B
Toprim	PF01751	513 - 613	5.4e-18	Toprim domain
DNA_gyraseB_C	PF00986	657 - 718	5.8e-25	DNA gyrase B subunit, carboxyl terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10270 AT3G10270 AT5G04130
fragaria_vesca	FvH4_6g25390 FvH4_6g25390 FvH4_6g25390
malus_domestica	MD12G1095800.v1.1 MD14G1090600.v1.1
prunus_persica	Prupe.7G033800_v2.0.a1
pyrus_communis	pycom12g08270
rosa_chinensis	RchiOBHm_Chr2g0125831
rosa_laevigata	RLG00000018881
rosa_multiflora	Rmu_co8103446.1_g000001 Rmu_sc0009079.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117620 Rroxscaffold_2G00117680 Rroxscaffold_2G00125340 Rroxscaffold_2G00125370 Rroxscaffold_3G00238600 Rroxscaffold_4G00318520 Rroxscaffold_4G00324150 Rroxscaffold_5G00337460
rosa_rugosa	Rorug02G0259400
rosa_samantha	Rh2AG317700 Rh2BG326100
rosa_wichuraiana	Rw2G025700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	455
AccIII	TCCGGA	1 cut(s)	2136
AciI	CCGC	2 cut(s)	188, 411
AclWI	GGATC	5 cut(s)	896, 909, 2036, 2049, 2187
AcoI	YGGCCR	2 cut(s)	444, 475
AcsI	RAATTY	4 cut(s)	743, 912, 1629, 1680
AcuI	CTGAAG	4 cut(s)	106, 1548, 1810, 1931
AfaI	GTAC	2 cut(s)	1105, 1383
AfeI	AGCGCT	1 cut(s)	250
AfiI	CCNNNNNNNGG	3 cut(s)	149, 150, 1622
AflII	CTTAAG	1 cut(s)	1210
AflIII	ACRYGT	1 cut(s)	1241
AhlI	ACTAGT	1 cut(s)	1453
AjnI	CCWGG	3 cut(s)	143, 1492, 1998
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
Alw21I	GWGCWC	2 cut(s)	31, 1795
Alw26I	GTCTC	3 cut(s)	13, 98, 521
AlwI	GGATC	5 cut(s)	896, 909, 2036, 2049, 2187
Ama87I	CYCGRG	1 cut(s)	2124
Aor13HI	TCCGGA	1 cut(s)	2136
Aor51HI	AGCGCT	1 cut(s)	250
AoxI	GGCC	6 cut(s)	66, 320, 444, 475, 1282, 1996
ApoI	RAATTY	4 cut(s)	743, 912, 1629, 1680
AseI	ATTAAT	1 cut(s)	1035
Asp700I	GAANNNNTTC	2 cut(s)	1680, 2148
AspLEI	GCGC	3 cut(s)	7, 251, 275
AspS9I	GGNCC	1 cut(s)	321
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	2 cut(s)	1229, 1726
AsuII	TTCGAA	1 cut(s)	193
AsuNHI	GCTAGC	2 cut(s)	850, 1501
AvaI	CYCGRG	1 cut(s)	2124
BamHI	GGATCC	2 cut(s)	901, 2041
BanII	GRGCYC	1 cut(s)	31
BauI	CACGAG	1 cut(s)	696
BbsI	GAAGAC	2 cut(s)	350, 1476
Bbv12I	GWGCWC	2 cut(s)	31, 1795
BbvCI	CCTCAGC	1 cut(s)	2088
BccI	CCATC	5 cut(s)	662, 957, 1016, 1124, 1781
BceAI	ACGGC	3 cut(s)	279, 462, 490
BciT130I	CCWGG	3 cut(s)	145, 1494, 2000
BciVI	GTATCC	2 cut(s)	477, 889
BclI	TGATCA	3 cut(s)	277, 876, 2169
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	3 cut(s)	13, 98, 521
BcuI	ACTAGT	1 cut(s)	1453
BfaI	CTAG	8 cut(s)	39, 174, 383, 851, 1082, 1296, 1454, 1502
BfmI	CTRYAG	1 cut(s)	583
BfoI	RGCGCY	3 cut(s)	8, 252, 276
BfrI	CTTAAG	1 cut(s)	1210
BfuI	GTATCC	2 cut(s)	477, 889
BglI	GCCNNNNNGGC	1 cut(s)	263
Bme1390I	CCNGG	4 cut(s)	145, 324, 1494, 2000
BmeT110I	CYCGRG	1 cut(s)	2124
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	3 cut(s)	903, 1120, 2043
BmrFI	CCNGG	4 cut(s)	145, 324, 1494, 2000
BmsI	GCATC	7 cut(s)	471, 508, 1051, 1765, 1979, 2001, 2071
BmtI	GCTAGC	2 cut(s)	854, 1505
BpiI	GAAGAC	2 cut(s)	350, 1476
BpmI	CTGGAG	2 cut(s)	1031, 1587
Bpu10I	CCTNAGC	1 cut(s)	2088
Bpu14I	TTCGAA	1 cut(s)	193
BpuEI	CTTGAG	2 cut(s)	390, 1403
BpuMI	CCSGG	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	1103
BsaBI	GATNNNNATC	3 cut(s)	498, 900, 1763
BsaJI	CCNNGG	7 cut(s)	143, 231, 261, 478, 1168, 1492, 1999
BsaWI	WCCGGW	2 cut(s)	344, 2136
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 518, 548
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 150, 1622
Bse1I	ACTGG	3 cut(s)	447, 1048, 1389
Bse8I	GATNNNNATC	3 cut(s)	498, 900, 1763
BseAI	TCCGGA	1 cut(s)	2136
BseBI	CCWGG	3 cut(s)	145, 1494, 2000
BseDI	CCNNGG	7 cut(s)	143, 231, 261, 478, 1168, 1492, 1999
BseGI	GGATG	4 cut(s)	499, 1372, 1797, 2083
BseJI	GATNNNNATC	3 cut(s)	498, 900, 1763
BseLI	CCNNNNNNNGG	3 cut(s)	149, 150, 1622
BseMII	CTCAG	5 cut(s)	8, 14, 630, 2060, 2079
BseNI	ACTGG	3 cut(s)	447, 1048, 1389
BseX3I	CGGCCG	1 cut(s)	475
BsgI	GTGCAG	1 cut(s)	2145
Bsh1285I	CGRYCG	1 cut(s)	478
BshFI	GGCC	6 cut(s)	68, 322, 446, 477, 1284, 1998
BsiEI	CGRYCG	1 cut(s)	478
BsiHKAI	GWGCWC	2 cut(s)	31, 1795
BsiHKCI	CYCGRG	1 cut(s)	2124
BsiSI	CCGG	3 cut(s)	324, 345, 2137
BslFI	GGGAC	2 cut(s)	353, 1664
BslI	CCNNNNNNNGG	3 cut(s)	149, 150, 1622
BsmAI	GTCTC	3 cut(s)	13, 98, 521
BsmFI	GGGAC	2 cut(s)	353, 1664
BsmI	GAATGC	1 cut(s)	1980
BsnI	GGCC	6 cut(s)	68, 322, 446, 477, 1284, 1998
BsoBI	CYCGRG	1 cut(s)	2124
Bsp119I	TTCGAA	1 cut(s)	193
Bsp1286I	GDGCHC	2 cut(s)	31, 1795
Bsp13I	TCCGGA	1 cut(s)	2136
Bsp143I	GATC	6 cut(s)	277, 876, 901, 2041, 2169, 2179
BspACI	CCGC	2 cut(s)	188, 411
BspANI	GGCC	6 cut(s)	68, 322, 446, 477, 1284, 1998
BspCNI	CTCAG	5 cut(s)	9, 15, 631, 2059, 2080
BspEI	TCCGGA	1 cut(s)	2136
BspHI	TCATGA	2 cut(s)	873, 991
BspLI	GGNNCC	3 cut(s)	903, 1120, 2043
BspOI	GCTAGC	2 cut(s)	854, 1505
BspPI	GGATC	5 cut(s)	896, 909, 2036, 2049, 2187
BspT104I	TTCGAA	1 cut(s)	193
BspTI	CTTAAG	1 cut(s)	1210
BsrI	ACTGG	3 cut(s)	447, 1048, 1389
BssECI	CCNNGG	7 cut(s)	143, 231, 261, 478, 1168, 1492, 1999
BssMI	GATC	6 cut(s)	277, 876, 901, 2041, 2169, 2179
BssSI	CACGAG	1 cut(s)	696
BssT1I	CCWWGG	1 cut(s)	1168
Bst2BI	CACGAG	1 cut(s)	696
Bst2UI	CCWGG	3 cut(s)	145, 1494, 2000
Bst4CI	ACNGT	3 cut(s)	532, 541, 1078
Bst6I	CTCTTC	5 cut(s)	112, 122, 993, 1315, 1344
BstAFI	CTTAAG	1 cut(s)	1210
BstBAI	YACGTR	1 cut(s)	1103
BstBI	TTCGAA	1 cut(s)	193
BstC8I	GCNNGC	5 cut(s)	549, 852, 1503, 1908, 2164
BstDEI	CTNAG	8 cut(s)	17, 23, 301, 639, 884, 1619, 2046, 2088
BstDSI	CCRYGG	2 cut(s)	261, 478
BstEII	GGTNACC	1 cut(s)	226
BstF5I	GGATG	4 cut(s)	499, 1372, 1797, 2083
BstH2I	RGCGCY	3 cut(s)	8, 252, 276
BstHHI	GCGC	3 cut(s)	7, 251, 275
BstKTI	GATC	6 cut(s)	280, 879, 904, 2044, 2172, 2182
BstMAI	GTCTC	3 cut(s)	13, 98, 521
BstMBI	GATC	6 cut(s)	277, 876, 901, 2041, 2169, 2179
BstMCI	CGRYCG	1 cut(s)	478
BstMWI	GCNNNNNNNGC	7 cut(s)	263, 272, 1421, 1430, 1433, 1442, 2090
BstNI	CCWGG	3 cut(s)	145, 1494, 2000
BstNSI	RCATGY	3 cut(s)	551, 1226, 1245
BstPI	GGTNACC	1 cut(s)	226
BstSCI	CCNGG	4 cut(s)	143, 322, 1492, 1998
BstSFI	CTRYAG	1 cut(s)	583
BstSNI	TACGTA	1 cut(s)	1103
BstV2I	GAAGAC	2 cut(s)	350, 1476
BstX2I	RGATCY	2 cut(s)	901, 2041
BstXI	CCANNNNNNTGG	1 cut(s)	1130
BstYI	RGATCY	2 cut(s)	901, 2041
BstZI	CGGCCG	1 cut(s)	475
BsuI	GTATCC	2 cut(s)	477, 889
BsuRI	GGCC	6 cut(s)	68, 322, 446, 477, 1284, 1998
BtgI	CCRYGG	2 cut(s)	261, 478
BtgZI	GCGATG	1 cut(s)	1676
BtsCI	GGATG	4 cut(s)	499, 1372, 1797, 2083
BtsIMutI	CAGTG	2 cut(s)	1055, 1083
Cac8I	GCNNGC	5 cut(s)	549, 852, 1503, 1908, 2164
CciI	TCATGA	2 cut(s)	873, 991
CfoI	GCGC	3 cut(s)	7, 251, 275
Cfr13I	GGNCC	1 cut(s)	321
CseI	GACGC	2 cut(s)	1605, 1937
Csp6I	GTAC	2 cut(s)	1104, 1382
CspCI	CAANNNNNGTGG	4 cut(s)	460, 495, 547, 582
CviQI	GTAC	2 cut(s)	1104, 1382
DdeI	CTNAG	8 cut(s)	17, 23, 301, 639, 884, 1619, 2046, 2088
DpnI	GATC	6 cut(s)	279, 878, 903, 2043, 2171, 2181
DpnII	GATC	6 cut(s)	277, 876, 901, 2041, 2169, 2179
DraI	TTTAAA	4 cut(s)	748, 799, 861, 1732
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
EaeI	YGGCCR	2 cut(s)	444, 475
EagI	CGGCCG	1 cut(s)	475
Eam1104I	CTCTTC	5 cut(s)	112, 122, 993, 1315, 1344
EarI	CTCTTC	5 cut(s)	112, 122, 993, 1315, 1344
EciI	GGCGGA	1 cut(s)	426
Ecl136II	GAGCTC	1 cut(s)	29
EclXI	CGGCCG	1 cut(s)	475
Eco105I	TACGTA	1 cut(s)	1103
Eco130I	CCWWGG	1 cut(s)	1168
Eco147I	AGGCCT	1 cut(s)	1998
Eco24I	GRGCYC	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	1832
Eco47III	AGCGCT	1 cut(s)	250
Eco52I	CGGCCG	1 cut(s)	475
Eco53kI	GAGCTC	1 cut(s)	29
Eco57I	CTGAAG	4 cut(s)	106, 1548, 1810, 1931
Eco88I	CYCGRG	1 cut(s)	2124
Eco91I	GGTNACC	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	29
EcoO65I	GGTNACC	1 cut(s)	226
EcoRII	CCWGG	3 cut(s)	143, 1492, 1998
EcoRV	GATATC	1 cut(s)	1832
EcoT14I	CCWWGG	1 cut(s)	1168
EcoT22I	ATGCAT	3 cut(s)	501, 1066, 1972
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	1168
FalI	AAGNNNNNCTT	2 cut(s)	1335, 1367
FaqI	GGGAC	2 cut(s)	353, 1664
FbaI	TGATCA	3 cut(s)	277, 876, 2169
FokI	GGATG	4 cut(s)	486, 1359, 1784, 2090
FriOI	GRGCYC	1 cut(s)	31
FspBI	CTAG	8 cut(s)	39, 174, 383, 851, 1082, 1296, 1454, 1502
GlaI	GCGC	3 cut(s)	6, 250, 274
GsuI	CTGGAG	2 cut(s)	1031, 1587
HaeII	RGCGCY	3 cut(s)	8, 252, 276
HaeIII	GGCC	6 cut(s)	68, 322, 446, 477, 1284, 1998
HapII	CCGG	3 cut(s)	324, 345, 2137
HgaI	GACGC	2 cut(s)	1605, 1937
HhaI	GCGC	3 cut(s)	7, 251, 275
Hin6I	GCGC	3 cut(s)	5, 249, 273
HinP1I	GCGC	3 cut(s)	5, 249, 273
HincII	GTYRAC	2 cut(s)	537, 1149
HindII	GTYRAC	2 cut(s)	537, 1149
HindIII	AAGCTT	3 cut(s)	1140, 1184, 1943
HinfI	GANTC	8 cut(s)	283, 768, 774, 1026, 1388, 1532, 1559, 1693
HpaI	GTTAAC	1 cut(s)	1149
HpaII	CCGG	3 cut(s)	324, 345, 2137
HphI	GGTGA	2 cut(s)	1229, 1726
Hpy166II	GTNNAC	2 cut(s)	537, 1149
Hpy8I	GTNNAC	2 cut(s)	537, 1149
HpyAV	CCTTC	9 cut(s)	157, 290, 1226, 1274, 1547, 1711, 1966, 1971, 2134
HpyCH4III	ACNGT	3 cut(s)	532, 541, 1078
HpyCH4IV	ACGT	2 cut(s)	168, 1102
HpyCH4V	TGCA	9 cut(s)	499, 547, 938, 1064, 1436, 1577, 1860, 1970, 2162
HpyF10VI	GCNNNNNNNGC	7 cut(s)	263, 272, 1421, 1430, 1433, 1442, 2090
HpyF3I	CTNAG	8 cut(s)	17, 23, 301, 639, 884, 1619, 2046, 2088
HpySE526I	ACGT	2 cut(s)	168, 1102
HspAI	GCGC	3 cut(s)	5, 249, 273
Kpn2I	TCCGGA	1 cut(s)	2136
Ksp22I	TGATCA	3 cut(s)	277, 876, 2169
KspAI	GTTAAC	1 cut(s)	1149
Kzo9I	GATC	6 cut(s)	277, 876, 901, 2041, 2169, 2179
LmnI	GCTCC	1 cut(s)	847
LweI	GCATC	7 cut(s)	471, 508, 1051, 1765, 1979, 2001, 2071
MaeI	CTAG	8 cut(s)	39, 174, 383, 851, 1082, 1296, 1454, 1502
MaeII	ACGT	2 cut(s)	168, 1102
MaeIII	GTNAC	7 cut(s)	81, 226, 505, 652, 709, 1368, 1748
MalI	GATC	6 cut(s)	279, 878, 903, 2043, 2171, 2181
MboI	GATC	6 cut(s)	277, 876, 901, 2041, 2169, 2179
MfeI	CAATTG	2 cut(s)	738, 828
MflI	RGATCY	2 cut(s)	901, 2041
MhlI	GDGCHC	2 cut(s)	31, 1795
Mph1103I	ATGCAT	3 cut(s)	501, 1066, 1972
MroI	TCCGGA	1 cut(s)	2136
MroXI	GAANNNNTTC	2 cut(s)	1680, 2148
MslI	CAYNNNNRTG	5 cut(s)	88, 552, 1128, 1377, 2023
MspA1I	CMGCKG	1 cut(s)	1565
MspCI	CTTAAG	1 cut(s)	1210
MspI	CCGG	3 cut(s)	324, 345, 2137
MspR9I	CCNGG	4 cut(s)	145, 324, 1494, 2000
MunI	CAATTG	2 cut(s)	738, 828
Mva1269I	GAATGC	1 cut(s)	1980
MvaI	CCWGG	3 cut(s)	145, 1494, 2000
MwoI	GCNNNNNNNGC	7 cut(s)	263, 272, 1421, 1430, 1433, 1442, 2090
NciI	CCSGG	1 cut(s)	324
NdeII	GATC	6 cut(s)	277, 876, 901, 2041, 2169, 2179
NheI	GCTAGC	2 cut(s)	850, 1501
NlaIV	GGNNCC	3 cut(s)	903, 1120, 2043
NmuCI	GTSAC	2 cut(s)	81, 709
NsiI	ATGCAT	3 cut(s)	501, 1066, 1972
NspI	RCATGY	3 cut(s)	551, 1226, 1245
NspV	TTCGAA	1 cut(s)	193
PaeI	GCATGC	1 cut(s)	551
PagI	TCATGA	2 cut(s)	873, 991
PceI	AGGCCT	1 cut(s)	1998
PciI	ACATGT	1 cut(s)	1241
PctI	GAATGC	1 cut(s)	1980
PdmI	GAANNNNTTC	2 cut(s)	1680, 2148
PfeI	GAWTC	8 cut(s)	283, 768, 774, 1026, 1388, 1532, 1559, 1693
Ppu21I	YACGTR	1 cut(s)	1103
PscI	ACATGT	1 cut(s)	1241
PshBI	ATTAAT	1 cut(s)	1035
Psp124BI	GAGCTC	1 cut(s)	31
Psp6I	CCWGG	3 cut(s)	143, 1492, 1998
PspEI	GGTNACC	1 cut(s)	226
PspGI	CCWGG	3 cut(s)	143, 1492, 1998
PspN4I	GGNNCC	3 cut(s)	903, 1120, 2043
PspPI	GGNCC	1 cut(s)	321
PsuI	RGATCY	2 cut(s)	901, 2041
PvuII	CAGCTG	1 cut(s)	1565
RsaI	GTAC	2 cut(s)	1105, 1383
RsaNI	GTAC	2 cut(s)	1104, 1382
RseI	CAYNNNNRTG	5 cut(s)	88, 552, 1128, 1377, 2023
SacI	GAGCTC	1 cut(s)	31
Sau3AI	GATC	6 cut(s)	277, 876, 901, 2041, 2169, 2179
Sau96I	GGNCC	1 cut(s)	321
ScrFI	CCNGG	4 cut(s)	145, 324, 1494, 2000
SduI	GDGCHC	2 cut(s)	31, 1795
SfaNI	GCATC	7 cut(s)	471, 508, 1051, 1765, 1979, 2001, 2071
SfcI	CTRYAG	1 cut(s)	583
SfuI	TTCGAA	1 cut(s)	193
SmiMI	CAYNNNNRTG	5 cut(s)	88, 552, 1128, 1377, 2023
SmlI	CTYRAG	3 cut(s)	405, 1210, 1418
SmoI	CTYRAG	3 cut(s)	405, 1210, 1418
SnaBI	TACGTA	1 cut(s)	1103
SpeI	ACTAGT	1 cut(s)	1453
SphI	GCATGC	1 cut(s)	551
SseBI	AGGCCT	1 cut(s)	1998
SsiI	CCGC	2 cut(s)	188, 411
SspMI	CTAG	8 cut(s)	39, 174, 383, 851, 1082, 1296, 1454, 1502
SstI	GAGCTC	1 cut(s)	31
StuI	AGGCCT	1 cut(s)	1998
StyD4I	CCNGG	4 cut(s)	143, 322, 1492, 1998
StyI	CCWWGG	1 cut(s)	1168
TaaI	ACNGT	3 cut(s)	532, 541, 1078
TaiI	ACGT	2 cut(s)	171, 1105
TaqI	TCGA	3 cut(s)	157, 193, 816
TatI	WGTACW	1 cut(s)	1381
TfiI	GAWTC	8 cut(s)	283, 768, 774, 1026, 1388, 1532, 1559, 1693
TscAI	CASTG	2 cut(s)	1055, 1083
TseFI	GTSAC	2 cut(s)	81, 709
Tsp45I	GTSAC	2 cut(s)	81, 709
TspDTI	ATGAA	9 cut(s)	52, 67, 199, 350, 390, 939, 980, 1008, 1689
TspGWI	ACGGA	2 cut(s)	914, 1128
TspRI	CASTG	2 cut(s)	1055, 1083
Vha464I	CTTAAG	1 cut(s)	1210
VspI	ATTAAT	1 cut(s)	1035
XapI	RAATTY	4 cut(s)	743, 912, 1629, 1680
XceI	RCATGY	3 cut(s)	551, 1226, 1245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	830
XmnI	GAANNNNTTC	2 cut(s)	1680, 2148
XspI	CTAG	8 cut(s)	39, 174, 383, 851, 1082, 1296, 1454, 1502
Zsp2I	ATGCAT	3 cut(s)	501, 1066, 1972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.