Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006623

Physical Location & Seq

Genomic Coordinates Forward (+)

60130951 .. 60132029

Gene Structure 1079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAGAGGGGGTGGAAGGAGTTCAAAGGAGGATGGGAGTTGAGACAGGCTGCTTACGGGCCTGGGTTATCATCTTCTTCATCTTCTTGGAGTGGAGCAACACTACAAATCTTGAGATGGTGGCTAGCCAAGTGGAAACACATTGAGAAGCTGTTTGATGAGAAAGTACAAGAGGCTACTGGAATAATGAGATTGTTACAAAATCTTAGTGAGGAGATTGAACGTGAAGAGAAGAGAGTTTTTGAAGCGATTATGCATCCTATAATCAAGAAATTTACATTGGAGACTGTGTTGACGGTTTTGCATGCTGGTGGCAAGTTTAGTGGTTCAAGTAGTGGCTATAGTGTGTCTGGTGGATTACATGGTGTGGGTTTATCAGGACTGAAAGCTTCGTTAACAAGAACACTGAATAACCTTGGCAAGAAATCAAAGCTTATCAAGCATAAAGATATTACCTTAAGTGGTGAGCATGTAAGAGAAGGGCTGACATGTGTAGTTTCGATCAAAGTTCCCAATCCGAGTTTGAAGGCCGGACAAAGACTAGGTTGGGAAATCCAGAGCTCGGCTGCAAAGAGGGCAAGGGAACTAGTCGGACAAAAGAGTGTTTTGCGTTCATCTTCTCTTCCAGGAAAGCTAGCTGATTTCTCATCAACCGATCCCGAAGAATCTGGTGATCAATGGATTGACTTGGCGGACGATGGTGAATCGTTGATTGAGTTGTTAAGAAGACGCAGCGGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003916 GO:0003918 GO:0005575 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008094 GO:0008150 GO:0008152 GO:0009295 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0061505 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseB DNA_gyraseB_C HATPase_c Toprim

Protein Analysis

247

Amino Acids

27.24

Weight (kDa)

9.63

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_gyraseB	PF00204	119 - 174	6.8e-12	DNA gyrase B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10270 AT3G10270 AT5G04130
fragaria_vesca	FvH4_6g25390 FvH4_6g25390 FvH4_6g25390
malus_domestica	MD12G1095800.v1.1 MD14G1090600.v1.1
prunus_persica	Prupe.7G033800_v2.0.a1
pyrus_communis	pycom12g08270
rosa_chinensis	RchiOBHm_Chr2g0125831
rosa_laevigata	RLG00000018881
rosa_multiflora	Rmu_co8103446.1_g000001 Rmu_sc0009079.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117620 Rroxscaffold_2G00117680 Rroxscaffold_2G00125340 Rroxscaffold_2G00125370 Rroxscaffold_3G00238600 Rroxscaffold_4G00318520 Rroxscaffold_4G00324150 Rroxscaffold_5G00337460
rosa_rugosa	Rorug02G0259400
rosa_samantha	Rh2AG317700 Rh2BG326100
rosa_wichuraiana	Rw2G025700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	692, 735
AclWI	GGATC	1 cut(s)	650
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	562
AflII	CTTAAG	1 cut(s)	457
AflIII	ACRYGT	1 cut(s)	488
AgsI	TTSAA	5 cut(s)	25, 221, 245, 330, 526
AhlI	ACTAGT	1 cut(s)	586
AjnI	CCWGG	2 cut(s)	61, 625
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	6 cut(s)	151, 389, 433, 561, 634, 638
AluI	AGCT	6 cut(s)	151, 389, 433, 561, 634, 638
Alw21I	GWGCWC	1 cut(s)	563
Alw26I	GTCTC	2 cut(s)	37, 278
AlwI	GGATC	1 cut(s)	650
AoxI	GGCC	2 cut(s)	59, 528
ApeKI	GCWGC	3 cut(s)	50, 566, 732
ApoI	RAATTY	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	3 cut(s)	476, 683, 713
AsuNHI	GCTAGC	2 cut(s)	124, 634
BanII	GRGCYC	1 cut(s)	563
BbsI	GAAGAC	1 cut(s)	733
Bbv12I	GWGCWC	1 cut(s)	563
BbvI	GCAGC	2 cut(s)	37, 553
BccI	CCATC	3 cut(s)	27, 111, 692
BciT130I	CCWGG	2 cut(s)	63, 627
BclI	TGATCA	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	37, 278
BcuI	ACTAGT	1 cut(s)	586
BfaI	CTAG	4 cut(s)	125, 542, 587, 635
BfmI	CTRYAG	1 cut(s)	340
BfrI	CTTAAG	1 cut(s)	457
BisI	GCNGC	3 cut(s)	51, 567, 733
BlsI	GCNGC	3 cut(s)	52, 568, 734
Bme1390I	CCNGG	2 cut(s)	63, 627
BmgT120I	GGNCC	1 cut(s)	59
BmrFI	CCNGG	2 cut(s)	63, 627
BmsI	GCATC	1 cut(s)	265
BmtI	GCTAGC	2 cut(s)	128, 638
BpiI	GAAGAC	1 cut(s)	733
BpuEI	CTTGAG	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	62, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	562
Bse1I	ACTGG	1 cut(s)	184
BseBI	CCWGG	2 cut(s)	63, 627
BseDI	CCNNGG	2 cut(s)	62, 415
BseGI	GGATG	2 cut(s)	38, 256
BseLI	CCNNNNNNNGG	1 cut(s)	562
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	37, 553
BshFI	GGCC	2 cut(s)	61, 530
BsiHKAI	GWGCWC	1 cut(s)	563
BsiSI	CCGG	1 cut(s)	531
BslI	CCNNNNNNNGG	1 cut(s)	562
BsmAI	GTCTC	2 cut(s)	37, 278
BsnI	GGCC	2 cut(s)	61, 530
Bsp1286I	GDGCHC	1 cut(s)	563
Bsp143I	GATC	3 cut(s)	501, 655, 673
BspACI	CCGC	2 cut(s)	692, 735
BspANI	GGCC	2 cut(s)	61, 530
BspOI	GCTAGC	2 cut(s)	128, 638
BspPI	GGATC	1 cut(s)	650
BspTI	CTTAAG	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	62, 415
BssMI	GATC	3 cut(s)	501, 655, 673
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	2 cut(s)	63, 627
Bst4CI	ACNGT	2 cut(s)	289, 298
Bst6I	CTCTTC	3 cut(s)	222, 227, 627
BstAFI	CTTAAG	1 cut(s)	457
BstC8I	GCNNGC	3 cut(s)	126, 306, 636
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	38, 256
BstKTI	GATC	3 cut(s)	504, 658, 676
BstMAI	GTCTC	2 cut(s)	37, 278
BstMBI	GATC	3 cut(s)	501, 655, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	439, 575
BstNI	CCWGG	2 cut(s)	63, 627
BstNSI	RCATGY	3 cut(s)	308, 473, 492
BstSCI	CCNGG	2 cut(s)	61, 625
BstSFI	CTRYAG	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	37, 553
BstV2I	GAAGAC	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	61, 530
BtsCI	GGATG	2 cut(s)	38, 256
BtsIMutI	CAGTG	1 cut(s)	404
Cac8I	GCNNGC	3 cut(s)	126, 306, 636
Cfr13I	GGNCC	1 cut(s)	59
CseI	GACGC	1 cut(s)	738
Csp6I	GTAC	1 cut(s)	167
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	4 cut(s)	305, 362, 470, 489
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	3 cut(s)	503, 657, 675
DpnII	GATC	3 cut(s)	501, 655, 673
Eam1104I	CTCTTC	3 cut(s)	222, 227, 627
EarI	CTCTTC	3 cut(s)	222, 227, 627
EciI	GGCGGA	1 cut(s)	707
Ecl136II	GAGCTC	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	563
Eco53kI	GAGCTC	1 cut(s)	561
EcoICRI	GAGCTC	1 cut(s)	561
EcoRII	CCWGG	2 cut(s)	61, 625
EcoT14I	CCWWGG	1 cut(s)	415
EcoT22I	ATGCAT	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	563
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	4 cut(s)	308, 365, 473, 492
FaiI	YATR	8 cut(s)	254, 263, 306, 342, 363, 444, 471, 490
FatI	CATG	4 cut(s)	304, 361, 469, 488
FauI	CCCGC	1 cut(s)	728
FbaI	TGATCA	1 cut(s)	673
Fnu4HI	GCNGC	3 cut(s)	51, 567, 733
FokI	GGATG	2 cut(s)	45, 243
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	3 cut(s)	51, 567, 733
FspBI	CTAG	4 cut(s)	125, 542, 587, 635
GluI	GCNGC	3 cut(s)	51, 567, 733
HaeIII	GGCC	2 cut(s)	61, 530
HapII	CCGG	1 cut(s)	531
HgaI	GACGC	1 cut(s)	738
Hin1II	CATG	4 cut(s)	308, 365, 473, 492
HincII	GTYRAC	2 cut(s)	294, 396
HindII	GTYRAC	2 cut(s)	294, 396
HindIII	AAGCTT	2 cut(s)	387, 431
HinfI	GANTC	2 cut(s)	665, 704
HpaI	GTTAAC	1 cut(s)	396
HpaII	CCGG	1 cut(s)	531
HphI	GGTGA	3 cut(s)	476, 683, 713
Hpy166II	GTNNAC	2 cut(s)	294, 396
Hpy188I	TCNGA	2 cut(s)	519, 593
Hpy188III	TCNNGA	5 cut(s)	112, 268, 378, 556, 659
Hpy8I	GTNNAC	2 cut(s)	294, 396
HpyAV	CCTTC	3 cut(s)	10, 473, 520
HpyCH4III	ACNGT	2 cut(s)	289, 298
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	3 cut(s)	256, 304, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	439, 575
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	4 cut(s)	308, 365, 473, 492
Ksp22I	TGATCA	1 cut(s)	673
KspAI	GTTAAC	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	501, 655, 673
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	2 cut(s)	37, 553
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	4 cut(s)	125, 542, 587, 635
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	1 cut(s)	195
MalI	GATC	3 cut(s)	503, 657, 675
MboI	GATC	3 cut(s)	501, 655, 673
MhlI	GDGCHC	1 cut(s)	563
MluCI	AATT	2 cut(s)	272, 739
MmeI	TCCRAC	1 cut(s)	571
MnlI	CCTC	4 cut(s)	23, 166, 205, 567
Mph1103I	ATGCAT	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	3 cut(s)	395, 458, 722
MslI	CAYNNNNRTG	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	735
MspCI	CTTAAG	1 cut(s)	457
MspI	CCGG	1 cut(s)	531
MspR9I	CCNGG	2 cut(s)	63, 627
MvaI	CCWGG	2 cut(s)	63, 627
MwoI	GCNNNNNNNGC	2 cut(s)	439, 575
NdeII	GATC	3 cut(s)	501, 655, 673
NheI	GCTAGC	2 cut(s)	124, 634
NlaIII	CATG	4 cut(s)	308, 365, 473, 492
NmeAIII	GCCGAG	1 cut(s)	542
NsiI	ATGCAT	1 cut(s)	258
NspI	RCATGY	3 cut(s)	308, 473, 492
PaeI	GCATGC	1 cut(s)	308
PciI	ACATGT	1 cut(s)	488
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	665, 704
PfoI	TCCNGGA	1 cut(s)	625
PkrI	GCNGC	3 cut(s)	52, 568, 734
PscI	ACATGT	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	563
Psp6I	CCWGG	2 cut(s)	61, 625
PspGI	CCWGG	2 cut(s)	61, 625
PspPI	GGNCC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	563
SaqAI	TTAA	3 cut(s)	395, 458, 722
SatI	GCNGC	3 cut(s)	51, 567, 733
Sau3AI	GATC	3 cut(s)	501, 655, 673
Sau96I	GGNCC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	63, 627
SduI	GDGCHC	1 cut(s)	563
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	2 cut(s)	112, 457
SmoI	CTYRAG	2 cut(s)	112, 457
SpeI	ACTAGT	1 cut(s)	586
SphI	GCATGC	1 cut(s)	308
Sse9I	AATT	2 cut(s)	272, 739
SsiI	CCGC	2 cut(s)	692, 735
SspMI	CTAG	4 cut(s)	125, 542, 587, 635
SstI	GAGCTC	1 cut(s)	563
StyD4I	CCNGG	2 cut(s)	61, 625
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	289, 298
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	500
TasI	AATT	2 cut(s)	272, 739
TatI	WGTACW	1 cut(s)	166
TfiI	GAWTC	2 cut(s)	665, 704
Tru1I	TTAA	3 cut(s)	395, 458, 722
Tru9I	TTAA	3 cut(s)	395, 458, 722
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	3 cut(s)	50, 566, 732
TspDTI	ATGAA	3 cut(s)	17, 69, 603
TspRI	CASTG	1 cut(s)	411
Vha464I	CTTAAG	1 cut(s)	457
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	3 cut(s)	308, 473, 492
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	4 cut(s)	125, 542, 587, 635
Zsp2I	ATGCAT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.