Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006623

Physical Location & Seq

Genomic Coordinates Reverse (-)

46980785 .. 46994100

Gene Structure 13316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00117620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2022 bp

ATGTCTCCACCCTCACTCTTCCTCCTCTTCTTCAGCCCACGGCCACCGCCACCACCTCTTTGTGGTCACAGGATTGGGCTTCGATTGAAGGACGTTCCTAGCTGCTTTGCGGTTCGAAATGTGAGAGCTTTCATGTCGTCCAGCTCGGTAACCGAGGCTTTTCAAGGAAGCACTGCCTCCACGGCTTATGGCGCTGATCAGATTCAGGTTTTAGAAGGCTTAGAGGCCGTTAGAAAGAGGCCCGGAATGTATATTGGGGACACCGGATTTCGTGGTCTTCATCATCTGGTTTATGAAATACTAGACAATGCTGTTGATGAGGCTCAAGGCGGACATGCTTCCAAGGTTGAGGTCATTTTACTGGCCGACAATTCTGTCAGCATCACAGACAACGGCCGTGGGATACCTACTGATATGCATCCTGTAACCAAGAAATCTACATTAGAGACTGTGTTGACGGTTTTGCATGCTGGTGGCAAGTTTGGTGGTTCAAGTAGTGGCTATAGTGTGTCTGGTGGATTACATGGTGTGGGTTTATCAGTCGTTAATGCCTTGTCTGAGCTTATGATCACTCTTAGACAAGAGGATACGGATCCAGAGAAAATCCAGCACAATGAATACTTCTATGCAGGGGGTTTGGTTGAATATGTTAGATGGCTAAATACTGATAAGAAACCTCTTCATGAAGTGGTGGGTTTCAGAAAAGAAGTAGATGGAATCACTATTAATGTAGCTCTCCAGTGGTGTTCTGATGCATATTCAGATACAGTGCTAGGGTATGCTAATAGCATACGTACTGCTGACGGAGGAACCCATATTGATGGACTGAAAGCTTCGTTAACAAGAACGCTGAATAACCTTGGGAAGAAATCAAAGCTTATCAAGGATAAAGATATTACCTTAAGTGGTGAGCATGTAAGAGAAGGGCTGACATGTGTAGTTTCAGTCAAAGTTCCCAATCCAGAGTTCGAAGGCCAGACAAAGACTAGGTTGGGAAATCCAGAGGTGCGAAGAGTGGTTGATAATTCTCTTCAAGAGTATCTTACAGAATACTTGGAGTTACATCCTGATGTACTGGATTCAATCCTTTCCAAGTCCTTAAATGCTCTCAAGGCAGCTCTGGCTGCAAAGAGGGCAAGGGAACTAGTCAGACAAAAGAGTGTTTTGCGTTCGTCTTCTCTCCCAGGAAAGCTAGCTGATTGCTCATCAACCAATCCTGAAGAATCTGAAATCTTTATAGTTGAAGGAGATTCAGCTGGAGGAAGTGCAAAGCAAGGTCGTGATAGACGCTTTCAGGCAATTCTTCCACTAAGGGGTAAAATTCTGAACATTGAAAGGAGGGACGAGGCAGCGATGTATAAAAATGAAGAAATTCAAAATCTGATTCTTGGACTTGGACTTGGGGTGAAGGGAGAGGACTTTAAAAAGGAAGCTCTGCGTTACCATAAGATTATCATCTTAACTGATGCTGATGTAGATGGTGCTCACATCCGAACTCTGCTACTGACATTTTTCTTCAGATATCAGAGAGCCTTATTTGATGAGGGTTGCATATATGTTGGTGTTCCACCCTTTTACAAGGTTGAAAGGGGGAAGCAAGCATATTATTGCTATGATGATGCTGAACTTAAAAAGCTTCAGAGTTCCTTCCCTTCAAATGCATCATACAGCATTCAAAGGTTCAAAGGACAACCTAGGGGTATCTGTGTTTTAGGACTTAGGGGTGGACTTAGGGTCGTAGTGTGTGGGGTGAAGGGGACTGTGATTAAAAGTCTGGGTTTTAAGGGAGAAGAAAGGGGAAATCTGGAATCACACCAGATTGGCCTGGGAGAAATGATGCCCACACAATTATGGGAAACAACAATGGATCCTCAGAAAAGGCTGCTGAAACAATTAAGTGTGGATGATGCTGCTGAGGCTAACTTTGTCTTTTCCTCCCTTATGGGTTCTCGGGTGGATTTCCGGAAGGAACTCATTCAAAATGCTGCACGCATGATCAACCTGGATCAGTTAGATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003916 GO:0003918 GO:0005575 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008094 GO:0008150 GO:0008152 GO:0009295 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0061505 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseB DNA_gyraseB_C HATPase_c Toprim

Protein Analysis

673

Amino Acids

74.1

Weight (kDa)

7.95

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	92 - 189	2.6e-15	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
DNA_gyraseB	PF00204	212 - 381	3.1e-55	DNA gyrase B
Toprim	PF01751	410 - 510	4.8e-18	Toprim domain
DNA_gyraseB_C	PF00986	608 - 660	8.1e-19	DNA gyrase B subunit, carboxyl terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10270 AT3G10270 AT5G04130
fragaria_vesca	FvH4_6g25390 FvH4_6g25390 FvH4_6g25390
malus_domestica	MD12G1095800.v1.1 MD14G1090600.v1.1
prunus_persica	Prupe.7G033800_v2.0.a1
pyrus_communis	pycom12g08270
rosa_chinensis	RchiOBHm_Chr2g0125831
rosa_laevigata	RLG00000018881
rosa_multiflora	Rmu_co8103446.1_g000001 Rmu_sc0009079.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117620 Rroxscaffold_2G00117680 Rroxscaffold_2G00125340 Rroxscaffold_2G00125370 Rroxscaffold_3G00238600 Rroxscaffold_4G00318520 Rroxscaffold_4G00324150 Rroxscaffold_5G00337460
rosa_rugosa	Rorug02G0259400
rosa_samantha	Rh2AG317700 Rh2BG326100
rosa_wichuraiana	Rw2G025700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AccIII	TCCGGA	1 cut(s)	1962
AciI	CCGC	3 cut(s)	47, 110, 330
AclWI	GGATC	5 cut(s)	587, 600, 1862, 1875, 2013
AcoI	YGGCCR	3 cut(s)	41, 363, 394
AcsI	RAATTY	2 cut(s)	1320, 1371
AcuI	CTGAAG	4 cut(s)	16, 1239, 1501, 1622
AfaI	GTAC	2 cut(s)	796, 1074
AfiI	CCNNNNNNNGG	2 cut(s)	62, 1313
AflII	CTTAAG	1 cut(s)	901
AflIII	ACRYGT	1 cut(s)	932
AhdI	GACNNNNNGTC	1 cut(s)	1733
AhlI	ACTAGT	1 cut(s)	1144
AjnI	CCWGG	3 cut(s)	1183, 1824, 2001
AjuI	GAANNNNNNNTTGG	2 cut(s)	950, 982
Alw21I	GWGCWC	1 cut(s)	1486
Alw26I	GTCTC	2 cut(s)	9, 440
AlwI	GGATC	5 cut(s)	587, 600, 1862, 1875, 2013
Ama87I	CYCGRG	1 cut(s)	1950
Aor13HI	TCCGGA	1 cut(s)	1962
AoxI	GGCC	7 cut(s)	41, 225, 239, 363, 394, 973, 1822
ApeKI	GCWGC	7 cut(s)	102, 1115, 1124, 1349, 1882, 1910, 1985
ApoI	RAATTY	2 cut(s)	1320, 1371
AseI	ATTAAT	1 cut(s)	726
Asp700I	GAANNNNTTC	2 cut(s)	1371, 1974
AspA2I	CCTAGG	1 cut(s)	1694
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	3 cut(s)	920, 1417, 1762
AsuII	TTCGAA	2 cut(s)	115, 969
AsuNHI	GCTAGC	1 cut(s)	1192
AvaI	CYCGRG	1 cut(s)	1950
AvrII	CCTAGG	1 cut(s)	1694
BamHI	GGATCC	2 cut(s)	592, 1867
BbsI	GAAGAC	2 cut(s)	269, 1167
Bbv12I	GWGCWC	1 cut(s)	1486
BbvCI	CCTCAGC	1 cut(s)	1914
BbvI	GCAGC	7 cut(s)	89, 1111, 1127, 1361, 1869, 1897, 1972
BccI	CCATC	4 cut(s)	648, 707, 815, 1472
BceAI	ACGGC	5 cut(s)	56, 198, 212, 381, 409
BciT130I	CCWGG	3 cut(s)	1185, 1826, 2003
BciVI	GTATCC	2 cut(s)	396, 580
BclI	TGATCA	3 cut(s)	196, 567, 1995
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	2 cut(s)	9, 440
BcuI	ACTAGT	1 cut(s)	1144
BfaI	CTAG	7 cut(s)	99, 302, 773, 987, 1145, 1193, 1695
BfmI	CTRYAG	1 cut(s)	502
BfoI	RGCGCY	1 cut(s)	195
BfrI	CTTAAG	1 cut(s)	901
BfuI	GTATCC	2 cut(s)	396, 580
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	7 cut(s)	103, 1116, 1125, 1350, 1883, 1911, 1986
BlnI	CCTAGG	1 cut(s)	1694
BlsI	GCNGC	7 cut(s)	104, 1117, 1126, 1351, 1884, 1912, 1987
Bme1390I	CCNGG	4 cut(s)	243, 1185, 1826, 2003
BmeRI	GACNNNNNGTC	1 cut(s)	1733
BmeT110I	CYCGRG	1 cut(s)	1950
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	3 cut(s)	594, 811, 1869
BmrFI	CCNGG	4 cut(s)	243, 1185, 1826, 2003
BmsI	GCATC	8 cut(s)	390, 427, 742, 1456, 1609, 1670, 1827, 1897
BmtI	GCTAGC	1 cut(s)	1196
BpiI	GAAGAC	2 cut(s)	269, 1167
BpmI	CTGGAG	2 cut(s)	722, 1278
Bpu10I	CCTNAGC	1 cut(s)	1914
Bpu14I	TTCGAA	2 cut(s)	115, 969
BpuEI	CTTGAG	2 cut(s)	309, 1094
BpuMI	CCSGG	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	794
BsaBI	GATNNNNATC	3 cut(s)	417, 591, 1454
BsaJI	CCNNGG	9 cut(s)	38, 153, 180, 342, 397, 859, 1183, 1694, 1825
BsaWI	WCCGGW	2 cut(s)	263, 1962
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 1313
Bse1I	ACTGG	3 cut(s)	366, 739, 1080
Bse8I	GATNNNNATC	3 cut(s)	417, 591, 1454
BseAI	TCCGGA	1 cut(s)	1962
BseBI	CCWGG	3 cut(s)	1185, 1826, 2003
BseDI	CCNNGG	9 cut(s)	38, 153, 180, 342, 397, 859, 1183, 1694, 1825
BseGI	GGATG	4 cut(s)	418, 1063, 1488, 1909
BseJI	GATNNNNATC	3 cut(s)	417, 591, 1454
BseLI	CCNNNNNNNGG	2 cut(s)	62, 1313
BseMII	CTCAG	3 cut(s)	549, 1886, 1905
BseNI	ACTGG	3 cut(s)	366, 739, 1080
BseRI	GAGGAG	1 cut(s)	14
BseX3I	CGGCCG	1 cut(s)	394
BseXI	GCAGC	7 cut(s)	89, 1111, 1127, 1361, 1869, 1897, 1972
BsgI	GTGCAG	1 cut(s)	1971
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	7 cut(s)	43, 227, 241, 365, 396, 975, 1824
BsiEI	CGRYCG	1 cut(s)	397
BsiHKAI	GWGCWC	1 cut(s)	1486
BsiHKCI	CYCGRG	1 cut(s)	1950
BsiSI	CCGG	3 cut(s)	243, 264, 1963
BslFI	GGGAC	3 cut(s)	272, 1355, 1771
BslI	CCNNNNNNNGG	2 cut(s)	62, 1313
BsmAI	GTCTC	2 cut(s)	9, 440
BsmFI	GGGAC	3 cut(s)	272, 1355, 1771
BsmI	GAATGC	1 cut(s)	1671
BsnI	GGCC	7 cut(s)	43, 227, 241, 365, 396, 975, 1824
BsoBI	CYCGRG	1 cut(s)	1950
Bsp119I	TTCGAA	2 cut(s)	115, 969
Bsp1286I	GDGCHC	1 cut(s)	1486
Bsp13I	TCCGGA	1 cut(s)	1962
Bsp143I	GATC	6 cut(s)	196, 567, 592, 1867, 1995, 2005
BspACI	CCGC	3 cut(s)	47, 110, 330
BspANI	GGCC	7 cut(s)	43, 227, 241, 365, 396, 975, 1824
BspCNI	CTCAG	3 cut(s)	550, 1885, 1906
BspEI	TCCGGA	1 cut(s)	1962
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	3 cut(s)	594, 811, 1869
BspOI	GCTAGC	1 cut(s)	1196
BspPI	GGATC	5 cut(s)	587, 600, 1862, 1875, 2013
BspT104I	TTCGAA	2 cut(s)	115, 969
BspTI	CTTAAG	1 cut(s)	901
BsrI	ACTGG	3 cut(s)	366, 739, 1080
BssECI	CCNNGG	9 cut(s)	38, 153, 180, 342, 397, 859, 1183, 1694, 1825
BssMI	GATC	6 cut(s)	196, 567, 592, 1867, 1995, 2005
BssT1I	CCWWGG	3 cut(s)	342, 859, 1694
Bst2UI	CCWGG	3 cut(s)	1185, 1826, 2003
Bst4CI	ACNGT	4 cut(s)	451, 460, 769, 1762
Bst6I	CTCTTC	5 cut(s)	23, 32, 684, 1006, 1035
BstAFI	CTTAAG	1 cut(s)	901
BstBAI	YACGTR	1 cut(s)	794
BstBI	TTCGAA	2 cut(s)	115, 969
BstC8I	GCNNGC	4 cut(s)	468, 1194, 1599, 1990
BstDEI	CTNAG	8 cut(s)	220, 558, 575, 1310, 1718, 1730, 1872, 1914
BstDSI	CCRYGG	3 cut(s)	38, 180, 397
BstEII	GGTNACC	1 cut(s)	148
BstF5I	GGATG	4 cut(s)	418, 1063, 1488, 1909
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	6 cut(s)	199, 570, 595, 1870, 1998, 2008
BstMAI	GTCTC	2 cut(s)	9, 440
BstMBI	GATC	6 cut(s)	196, 567, 592, 1867, 1995, 2005
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	7 cut(s)	182, 191, 1112, 1121, 1124, 1133, 1916
BstNI	CCWGG	3 cut(s)	1185, 1826, 2003
BstNSI	RCATGY	4 cut(s)	338, 470, 917, 936
BstPI	GGTNACC	1 cut(s)	148
BstSCI	CCNGG	4 cut(s)	241, 1183, 1824, 2001
BstSFI	CTRYAG	1 cut(s)	502
BstSNI	TACGTA	1 cut(s)	794
BstV1I	GCAGC	7 cut(s)	89, 1111, 1127, 1361, 1869, 1897, 1972
BstV2I	GAAGAC	2 cut(s)	269, 1167
BstX2I	RGATCY	2 cut(s)	592, 1867
BstXI	CCANNNNNNTGG	1 cut(s)	821
BstYI	RGATCY	2 cut(s)	592, 1867
BstZI	CGGCCG	1 cut(s)	394
BsuI	GTATCC	2 cut(s)	396, 580
BsuRI	GGCC	7 cut(s)	43, 227, 241, 365, 396, 975, 1824
BtgI	CCRYGG	3 cut(s)	38, 180, 397
BtgZI	GCGATG	1 cut(s)	1367
BtsCI	GGATG	4 cut(s)	418, 1063, 1488, 1909
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	3 cut(s)	171, 746, 774
Cac8I	GCNNGC	4 cut(s)	468, 1194, 1599, 1990
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	240
CseI	GACGC	1 cut(s)	1296
Csp6I	GTAC	2 cut(s)	795, 1073
CspCI	CAANNNNNGTGG	4 cut(s)	379, 414, 466, 501
CviAII	CATG	8 cut(s)	133, 335, 467, 524, 683, 914, 933, 1993
CviQI	GTAC	2 cut(s)	795, 1073
DdeI	CTNAG	8 cut(s)	220, 558, 575, 1310, 1718, 1730, 1872, 1914
DpnI	GATC	6 cut(s)	198, 569, 594, 1869, 1997, 2007
DpnII	GATC	6 cut(s)	196, 567, 592, 1867, 1995, 2005
DraI	TTTAAA	1 cut(s)	1423
DrdI	GACNNNNNNGTC	1 cut(s)	374
DriI	GACNNNNNGTC	1 cut(s)	1733
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	3 cut(s)	41, 363, 394
EagI	CGGCCG	1 cut(s)	394
Eam1104I	CTCTTC	5 cut(s)	23, 32, 684, 1006, 1035
Eam1105I	GACNNNNNGTC	1 cut(s)	1733
EarI	CTCTTC	5 cut(s)	23, 32, 684, 1006, 1035
EciI	GGCGGA	1 cut(s)	345
EclXI	CGGCCG	1 cut(s)	394
Eco105I	TACGTA	1 cut(s)	794
Eco130I	CCWWGG	3 cut(s)	342, 859, 1694
Eco32I	GATATC	1 cut(s)	1523
Eco52I	CGGCCG	1 cut(s)	394
Eco57I	CTGAAG	4 cut(s)	16, 1239, 1501, 1622
Eco88I	CYCGRG	1 cut(s)	1950
Eco91I	GGTNACC	1 cut(s)	148
EcoO65I	GGTNACC	1 cut(s)	148
EcoRII	CCWGG	3 cut(s)	1183, 1824, 2001
EcoRV	GATATC	1 cut(s)	1523
EcoT14I	CCWWGG	3 cut(s)	342, 859, 1694
EcoT22I	ATGCAT	3 cut(s)	420, 757, 1663
ErhI	CCWWGG	3 cut(s)	342, 859, 1694
FaeI	CATG	8 cut(s)	136, 338, 470, 527, 686, 917, 936, 1996
FalI	AAGNNNNNCTT	2 cut(s)	1026, 1058
FaqI	GGGAC	3 cut(s)	272, 1355, 1771
FatI	CATG	8 cut(s)	132, 334, 466, 523, 682, 913, 932, 1992
FbaI	TGATCA	3 cut(s)	196, 567, 1995
Fnu4HI	GCNGC	7 cut(s)	103, 1116, 1125, 1350, 1883, 1911, 1986
FokI	GGATG	4 cut(s)	405, 1050, 1475, 1916
Fsp4HI	GCNGC	7 cut(s)	103, 1116, 1125, 1350, 1883, 1911, 1986
FspBI	CTAG	7 cut(s)	99, 302, 773, 987, 1145, 1193, 1695
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	7 cut(s)	103, 1116, 1125, 1350, 1883, 1911, 1986
GsuI	CTGGAG	2 cut(s)	722, 1278
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	7 cut(s)	43, 227, 241, 365, 396, 975, 1824
HapII	CCGG	3 cut(s)	243, 264, 1963
HgaI	GACGC	1 cut(s)	1296
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	8 cut(s)	136, 338, 470, 527, 686, 917, 936, 1996
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	2 cut(s)	456, 840
HindII	GTYRAC	2 cut(s)	456, 840
HindIII	AAGCTT	3 cut(s)	831, 875, 1634
HinfI	GANTC	7 cut(s)	202, 717, 1079, 1223, 1250, 1384, 1808
HpaI	GTTAAC	1 cut(s)	840
HpaII	CCGG	3 cut(s)	243, 264, 1963
HphI	GGTGA	3 cut(s)	920, 1417, 1762
Hpy166II	GTNNAC	3 cut(s)	456, 840, 1727
Hpy8I	GTNNAC	3 cut(s)	456, 840, 1727
HpyCH4III	ACNGT	4 cut(s)	451, 460, 769, 1762
HpyCH4IV	ACGT	2 cut(s)	93, 793
HpyCH4V	TGCA	9 cut(s)	418, 466, 629, 755, 1127, 1268, 1551, 1661, 1988
HpyF10VI	GCNNNNNNNGC	7 cut(s)	182, 191, 1112, 1121, 1124, 1133, 1916
HpyF3I	CTNAG	8 cut(s)	220, 558, 575, 1310, 1718, 1730, 1872, 1914
HpySE526I	ACGT	2 cut(s)	93, 793
Hsp92II	CATG	8 cut(s)	136, 338, 470, 527, 686, 917, 936, 1996
HspAI	GCGC	1 cut(s)	192
Kpn2I	TCCGGA	1 cut(s)	1962
Ksp22I	TGATCA	3 cut(s)	196, 567, 1995
KspAI	GTTAAC	1 cut(s)	840
Kzo9I	GATC	6 cut(s)	196, 567, 592, 1867, 1995, 2005
Lsp1109I	GCAGC	7 cut(s)	89, 1111, 1127, 1361, 1869, 1897, 1972
LweI	GCATC	8 cut(s)	390, 427, 742, 1456, 1609, 1670, 1827, 1897
MaeI	CTAG	7 cut(s)	99, 302, 773, 987, 1145, 1193, 1695
MaeII	ACGT	2 cut(s)	93, 793
MaeIII	GTNAC	5 cut(s)	65, 148, 424, 1059, 1439
MalI	GATC	6 cut(s)	198, 569, 594, 1869, 1997, 2007
MboI	GATC	6 cut(s)	196, 567, 592, 1867, 1995, 2005
MflI	RGATCY	2 cut(s)	592, 1867
MhlI	GDGCHC	1 cut(s)	1486
MluCI	AATT	7 cut(s)	370, 1024, 1299, 1320, 1371, 1847, 1892
Mph1103I	ATGCAT	3 cut(s)	420, 757, 1663
MroI	TCCGGA	1 cut(s)	1962
MroXI	GAANNNNTTC	2 cut(s)	1371, 1974
MslI	CAYNNNNRTG	4 cut(s)	471, 819, 1068, 1849
MspA1I	CMGCKG	1 cut(s)	1256
MspCI	CTTAAG	1 cut(s)	901
MspI	CCGG	3 cut(s)	243, 264, 1963
MspR9I	CCNGG	4 cut(s)	243, 1185, 1826, 2003
Mva1269I	GAATGC	1 cut(s)	1671
MvaI	CCWGG	3 cut(s)	1185, 1826, 2003
MwoI	GCNNNNNNNGC	7 cut(s)	182, 191, 1112, 1121, 1124, 1133, 1916
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	6 cut(s)	196, 567, 592, 1867, 1995, 2005
NheI	GCTAGC	1 cut(s)	1192
NlaIII	CATG	8 cut(s)	136, 338, 470, 527, 686, 917, 936, 1996
NlaIV	GGNNCC	3 cut(s)	594, 811, 1869
NmuCI	GTSAC	1 cut(s)	65
NsiI	ATGCAT	3 cut(s)	420, 757, 1663
NspI	RCATGY	4 cut(s)	338, 470, 917, 936
NspV	TTCGAA	2 cut(s)	115, 969
PaeI	GCATGC	1 cut(s)	470
PagI	TCATGA	1 cut(s)	682
PciI	ACATGT	1 cut(s)	932
PctI	GAATGC	1 cut(s)	1671
PdmI	GAANNNNTTC	2 cut(s)	1371, 1974
PfeI	GAWTC	7 cut(s)	202, 717, 1079, 1223, 1250, 1384, 1808
PkrI	GCNGC	7 cut(s)	104, 1117, 1126, 1351, 1884, 1912, 1987
Ppu21I	YACGTR	1 cut(s)	794
PscI	ACATGT	1 cut(s)	932
PshBI	ATTAAT	1 cut(s)	726
Psp6I	CCWGG	3 cut(s)	1183, 1824, 2001
PspEI	GGTNACC	1 cut(s)	148
PspGI	CCWGG	3 cut(s)	1183, 1824, 2001
PspN4I	GGNNCC	3 cut(s)	594, 811, 1869
PspPI	GGNCC	1 cut(s)	240
PsuI	RGATCY	2 cut(s)	592, 1867
PvuII	CAGCTG	1 cut(s)	1256
RsaI	GTAC	2 cut(s)	796, 1074
RsaNI	GTAC	2 cut(s)	795, 1073
RseI	CAYNNNNRTG	4 cut(s)	471, 819, 1068, 1849
SatI	GCNGC	7 cut(s)	103, 1116, 1125, 1350, 1883, 1911, 1986
Sau3AI	GATC	6 cut(s)	196, 567, 592, 1867, 1995, 2005
Sau96I	GGNCC	1 cut(s)	240
ScrFI	CCNGG	4 cut(s)	243, 1185, 1826, 2003
SduI	GDGCHC	1 cut(s)	1486
SfaNI	GCATC	8 cut(s)	390, 427, 742, 1456, 1609, 1670, 1827, 1897
SfcI	CTRYAG	1 cut(s)	502
SfuI	TTCGAA	2 cut(s)	115, 969
SmiMI	CAYNNNNRTG	4 cut(s)	471, 819, 1068, 1849
SmlI	CTYRAG	3 cut(s)	324, 901, 1109
SmoI	CTYRAG	3 cut(s)	324, 901, 1109
SnaBI	TACGTA	1 cut(s)	794
SpeI	ACTAGT	1 cut(s)	1144
SphI	GCATGC	1 cut(s)	470
Sse9I	AATT	7 cut(s)	370, 1024, 1299, 1320, 1371, 1847, 1892
SsiI	CCGC	3 cut(s)	47, 110, 330
SspMI	CTAG	7 cut(s)	99, 302, 773, 987, 1145, 1193, 1695
StyD4I	CCNGG	4 cut(s)	241, 1183, 1824, 2001
StyI	CCWWGG	3 cut(s)	342, 859, 1694
TaaI	ACNGT	4 cut(s)	451, 460, 769, 1762
TaiI	ACGT	2 cut(s)	96, 796
TaqI	TCGA	3 cut(s)	82, 115, 969
TasI	AATT	7 cut(s)	370, 1024, 1299, 1320, 1371, 1847, 1892
TatI	WGTACW	1 cut(s)	1072
TfiI	GAWTC	7 cut(s)	202, 717, 1079, 1223, 1250, 1384, 1808
TscAI	CASTG	3 cut(s)	178, 746, 774
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	7 cut(s)	102, 1115, 1124, 1349, 1882, 1910, 1985
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	7 cut(s)	121, 269, 309, 630, 671, 699, 1380
TspGWI	ACGGA	2 cut(s)	605, 819
TspRI	CASTG	3 cut(s)	178, 746, 774
Vha464I	CTTAAG	1 cut(s)	901
VspI	ATTAAT	1 cut(s)	726
XapI	RAATTY	2 cut(s)	1320, 1371
XceI	RCATGY	4 cut(s)	338, 470, 917, 936
XmaJI	CCTAGG	1 cut(s)	1694
XmnI	GAANNNNTTC	2 cut(s)	1371, 1974
XspI	CTAG	7 cut(s)	99, 302, 773, 987, 1145, 1193, 1695
Zsp2I	ATGCAT	3 cut(s)	420, 757, 1663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.