Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006623

Physical Location & Seq

Genomic Coordinates Reverse (-)

27263476 .. 27264383

Gene Structure 908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0259400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCGACGAGATCGAATATGAAGGGTTTCTACAAGCAAAAGAAGAGCACCACCGCCGGTGGTATCTCCAAGAAGAAGAAAACCCAAGGCGCTTCCGCCGCCGCCTCTTTGGGCTCCGACGTCACCCAACCCTCCGCCCTTATCTCCCACAGCGCTCCTGATCTCAAAGATGATTATGATGAGCAAGAGGAGGTGCTGAGGCAATTTGATTTGAACACGGCGTATGGGCCGTGTTTTGGGATCACCAGACTCGCAAGGTGGGAGCGTGCCTGCAAGCTGGGGATGGATCCTCCCAAGGAAGTGGAGAGTCTTTTGAAGAGTGGGAAGGTTCGACTCGAGTGCTTGTGGGATGGTCGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003916 GO:0003918 GO:0005575 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008094 GO:0008150 GO:0008152 GO:0009295 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0061505 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseB DNA_gyraseB_C HATPase_c Toprim

Protein Analysis

120

Amino Acids

13.21

Weight (kDa)

9.19

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_delta_4	PF04081	56 - 106	7.1e-19	DNA polymerase delta, subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10270 AT3G10270 AT5G04130
fragaria_vesca	FvH4_6g25390 FvH4_6g25390 FvH4_6g25390
malus_domestica	MD12G1095800.v1.1 MD14G1090600.v1.1
prunus_persica	Prupe.7G033800_v2.0.a1
pyrus_communis	pycom12g08270
rosa_chinensis	RchiOBHm_Chr2g0125831
rosa_laevigata	RLG00000018881
rosa_multiflora	Rmu_co8103446.1_g000001 Rmu_sc0009079.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117620 Rroxscaffold_2G00117680 Rroxscaffold_2G00125340 Rroxscaffold_2G00125370 Rroxscaffold_3G00238600 Rroxscaffold_4G00318520 Rroxscaffold_4G00324150 Rroxscaffold_5G00337460
rosa_rugosa	Rorug02G0259400
rosa_samantha	Rh2AG317700 Rh2BG326100
rosa_wichuraiana	Rw2G025700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	123
AciI	CCGC	5 cut(s)	54, 96, 99, 102, 135
AclWI	GGATC	3 cut(s)	248, 281, 294
AcyI	GRCGYC	1 cut(s)	120
AfeI	AGCGCT	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	214, 316
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
Alw21I	GWGCWC	1 cut(s)	50
AlwI	GGATC	3 cut(s)	248, 281, 294
Ama87I	CYCGRG	1 cut(s)	335
Aor51HI	AGCGCT	1 cut(s)	154
AoxI	GGCC	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	92, 155
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	115, 235
AvaI	CYCGRG	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
Bbv12I	GWGCWC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	197
BccI	CCATC	2 cut(s)	277, 344
BceAI	ACGGC	2 cut(s)	214, 234
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BfoI	RGCGCY	2 cut(s)	93, 156
BisI	GCNGC	2 cut(s)	99, 102
BlsI	GCNGC	2 cut(s)	100, 103
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	115, 288
Bpu10I	CCTNAGC	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	85, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse118I	RCCGGY	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	85, 294
BseGI	GGATG	2 cut(s)	288, 355
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	203
BseYI	CCCAGC	1 cut(s)	277
BshFI	GGCC	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	236
BsnI	GGCC	1 cut(s)	229
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	50, 116
Bsp143I	GATC	4 cut(s)	11, 160, 240, 286
BspACI	CCGC	5 cut(s)	54, 96, 99, 102, 135
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	115, 288
BspPI	GGATC	3 cut(s)	248, 281, 294
BspQI	GCTCTTC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	85, 294
BssMI	GATC	4 cut(s)	11, 160, 240, 286
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	2 cut(s)	85, 294
Bst6I	CTCTTC	2 cut(s)	38, 311
BstACI	GRCGYC	1 cut(s)	120
BstC8I	GCNNGC	3 cut(s)	267, 271, 275
BstDEI	CTNAG	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	288, 355
BstH2I	RGCGCY	2 cut(s)	93, 156
BstHHI	GCGC	2 cut(s)	92, 155
BstKTI	GATC	4 cut(s)	14, 163, 243, 289
BstMBI	GATC	4 cut(s)	11, 160, 240, 286
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	288, 355
Cac8I	GCNNGC	3 cut(s)	267, 271, 275
CfoI	GCGC	2 cut(s)	92, 155
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	227
CviJI	RGCY	3 cut(s)	114, 229, 277
CviKI_1	RGCY	3 cut(s)	114, 229, 277
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	4 cut(s)	13, 162, 242, 288
DpnII	GATC	4 cut(s)	11, 160, 240, 286
Eam1104I	CTCTTC	2 cut(s)	38, 311
EarI	CTCTTC	2 cut(s)	38, 311
EciI	GGCGGA	2 cut(s)	85, 124
Eco130I	CCWWGG	2 cut(s)	85, 294
Eco24I	GRGCYC	1 cut(s)	116
Eco47III	AGCGCT	1 cut(s)	154
Eco88I	CYCGRG	1 cut(s)	335
EcoT14I	CCWWGG	2 cut(s)	85, 294
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	2 cut(s)	85, 294
FaiI	YATR	3 cut(s)	20, 177, 225
Fnu4HI	GCNGC	2 cut(s)	99, 102
FokI	GGATG	1 cut(s)	295
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	99, 102
GlaI	GCGC	2 cut(s)	91, 154
GluI	GCNGC	2 cut(s)	99, 102
GsaI	CCCAGC	1 cut(s)	281
HaeII	RGCGCY	2 cut(s)	93, 156
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	1 cut(s)	57
HhaI	GCGC	2 cut(s)	92, 155
Hin1I	GRCGYC	1 cut(s)	120
Hin6I	GCGC	2 cut(s)	90, 153
HinP1I	GCGC	2 cut(s)	90, 153
HinfI	GANTC	3 cut(s)	249, 307, 333
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	2 cut(s)	115, 235
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	158
Hpy99I	CGWCG	2 cut(s)	10, 122
HpyAV	CCTTC	2 cut(s)	16, 319
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	1 cut(s)	120
HspAI	GCGC	2 cut(s)	90, 153
Kzo9I	GATC	4 cut(s)	11, 160, 240, 286
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	3 cut(s)	119, 160, 262
LpnPI	CCDG	5 cut(s)	70, 171, 259, 263, 283
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	4 cut(s)	13, 162, 242, 288
MboI	GATC	4 cut(s)	11, 160, 240, 286
MboII	GAAGA	4 cut(s)	55, 85, 88, 328
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	50, 116
MluCI	AATT	1 cut(s)	203
MlyI	GAGTC	3 cut(s)	243, 316, 327
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	6 cut(s)	115, 142, 181, 184, 192, 300
MroXI	GAANNNNTTC	1 cut(s)	26
MspI	CCGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	4 cut(s)	11, 160, 240, 286
NlaIV	GGNNCC	2 cut(s)	115, 288
NmuCI	GTSAC	1 cut(s)	121
PaeR7I	CTCGAG	1 cut(s)	335
PciSI	GCTCTTC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	100, 103
PleI	GAGTC	3 cut(s)	243, 315, 327
PpsI	GAGTC	3 cut(s)	243, 315, 327
PspFI	CCCAGC	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	115, 288
PspPI	GGNCC	1 cut(s)	227
PspXI	VCTCGAGB	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	38
SatI	GCNGC	2 cut(s)	99, 102
Sau3AI	GATC	4 cut(s)	11, 160, 240, 286
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	3 cut(s)	243, 316, 327
SduI	GDGCHC	2 cut(s)	50, 116
SetI	ASST	5 cut(s)	123, 195, 260, 279, 330
Sfr274I	CTCGAG	1 cut(s)	335
SgrAI	CRCCGGYG	1 cut(s)	56
SlaI	CTCGAG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	203
SsiI	CCGC	5 cut(s)	54, 96, 99, 102, 135
StyI	CCWWGG	2 cut(s)	85, 294
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	3 cut(s)	14, 331, 336
TasI	AATT	1 cut(s)	203
TauI	GCSGC	2 cut(s)	101, 104
TseFI	GTSAC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	26
ZraI	GACGTC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.