Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009079.1

Orthogroup ID

OG0006623

Physical Location & Seq

Genomic Coordinates Forward (+)

13608 .. 27568

Gene Structure 13961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009079.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2220 bp

atggcgcttgttcttctgagactgagagctcattctcctagtcctccttatcttgttcgcttcatggccttacgcttcatgtcacactcatgtctccaccctcactcttcctcccttgctcgtccctccctcttgttcagcccaccagcaccagcaccagcaccacccaggattgggcttcgattgaaggacgttcctagctgctgtgctgcggttcgaaatgtgagagctttcatgtcgtccagctcggtaaccgaggcttttcaaggaagcgctgcggcctccacggcttatggcgctgatcagattcaggttttagaaggcttagaggctgttagaaagaggcccggaatgtatattggggacaccggatttcgtggtcttcatcatctggtttatgaaatactagacaatgctgttgatgaggctcaaggtggatatgcttcaaaggttgaggtcattttactggccgacaattctgtcagcatcacagacaacggccgtgggatacctactgatatgcatcctgtaaccaagaaatctacattggagactgtcttgacggttttgcatgctggtggcaagtttggtggttcaagtagtggctatagtgtgtctggtggattacatggtgtgggtttatcagttgttaatgccttgtctgaggcattagaagttactatttggcgtgatggaatggaataccagcaaaagtattctcgtggaaagcctgtgacaactctctcttgtcatgtgcttccaattgaatttaaagatagacaaggaacacgaatcagattcttgcctgacaaacaagtatttaaaactcttaatcagtttgactaccacacaattgctggaagaattagggagctagcttttttaaaccctaatctcatgatcactcttagacaagaggatacggatccagagaaaatccagcacaatgaatacttctatgcagggggtttggttgaatatgttagatggctaaatactgataagaaacctcttcatgaagtggtgggtttcagaaaagaagtagatggaatcactattaatgtagctctccagtggtgttctgatgcatattcagatacagtgctggggtatgctaatagcatacgtactgctgacggaggaacccatattgatggactgaaagcttcgttaacaagaacgctgaataaccttgggaagaagtcaaagcttatcaaggataaagatattaccttaagtggtgagcatgtaagagaagggctgacatgtgtagtttcagtcaaagttcccaatccagagtttgaaggccagacaaagactaggttgggaaatccagaggtgcgaagagtggttgataattctcttcaagagtatcttacagaatacttggagttacatcctgatgtactggattcaatcctttccaagtccttaaatgctctcaaggcagctctggctgcaaagagggcaagggaactagtcagacaaaagagtgttttgcgttcgtcttctctcccaggaaagctagctgattgctcatcaaccaatcctgaagaatctgaaatctttatagttgaaggagattcagctggaggaagtgcaaagcaaggtcgtgatagacgctttcaggcaattcttccactaaggggtaaaattctgaacattgaaaggagggacgaggcagcgatgtataaaaatgaagaaattcaaaatctgattcttggacttggacttggggtgaagggagaggactttaaaaaggaagctctgcgttaccataagattatcatcttaactgatgctgatgtagatggtgctcacatccgaactctgctactgacttttttcttcagatatcagagagccttgtttgatgagggttgcatatatgttggtgttccacccttttacaaggttgaaaggggaaagcaagcatattattgctatgatgacgctgaacttaaaaagcttcagagttccttcccttcaaatgcatcctacagcattcaaaggttcaaaggcctgggagaaatgatgcccacacaattatgggaaacaacaatggatcctcaaaaaaggctactgaaacaattaagtgtggatgatgctgctgaggctaattttgtcttttcctcccttatgggttctcgggtggatttccggaaggaactcattcaaaatgctgcacgcatgatcagcttggatcagttagatatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003916 GO:0003918 GO:0005575 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008094 GO:0008150 GO:0008152 GO:0009295 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0061505 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseB DNA_gyraseB_C HATPase_c Toprim

Protein Analysis

739

Amino Acids

82.04

Weight (kDa)

8.59

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10270 AT3G10270 AT5G04130
fragaria_vesca	FvH4_6g25390 FvH4_6g25390 FvH4_6g25390
malus_domestica	MD12G1095800.v1.1 MD14G1090600.v1.1
prunus_persica	Prupe.7G033800_v2.0.a1
pyrus_communis	pycom12g08270
rosa_chinensis	RchiOBHm_Chr2g0125831
rosa_laevigata	RLG00000018881
rosa_multiflora	Rmu_co8103446.1_g000001 Rmu_sc0009079.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117620 Rroxscaffold_2G00117680 Rroxscaffold_2G00125340 Rroxscaffold_2G00125370 Rroxscaffold_3G00238600 Rroxscaffold_4G00318520 Rroxscaffold_4G00324150 Rroxscaffold_5G00337460
rosa_rugosa	Rorug02G0259400
rosa_samantha	Rh2AG317700 Rh2BG326100
rosa_wichuraiana	Rw2G025700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	479
AccIII	TCCGGA	1 cut(s)	2160
AciI	CCGC	2 cut(s)	212, 278
AclWI	GGATC	5 cut(s)	920, 933, 2060, 2073, 2211
AcoI	YGGCCR	2 cut(s)	468, 499
AcsI	RAATTY	3 cut(s)	767, 1653, 1704
AcuI	CTGAAG	3 cut(s)	1572, 1834, 1955
AfaI	GTAC	2 cut(s)	1129, 1407
AfeI	AGCGCT	1 cut(s)	274
AfiI	CCNNNNNNNGG	3 cut(s)	173, 174, 1646
AflII	CTTAAG	1 cut(s)	1234
AflIII	ACRYGT	1 cut(s)	1265
AhlI	ACTAGT	1 cut(s)	1477
AjnI	CCWGG	3 cut(s)	167, 1516, 2022
AjuI	GAANNNNNNNTTGG	2 cut(s)	530, 562
Alw21I	GWGCWC	2 cut(s)	31, 1819
Alw26I	GTCTC	3 cut(s)	13, 98, 545
AlwI	GGATC	5 cut(s)	920, 933, 2060, 2073, 2211
Ama87I	CYCGRG	1 cut(s)	2148
Aor13HI	TCCGGA	1 cut(s)	2160
Aor51HI	AGCGCT	1 cut(s)	274
AoxI	GGCC	7 cut(s)	66, 279, 344, 468, 499, 1306, 2020
ApeKI	GCWGC	8 cut(s)	201, 209, 275, 1448, 1457, 1682, 2108, 2183
ApoI	RAATTY	3 cut(s)	767, 1653, 1704
AseI	ATTAAT	1 cut(s)	1059
Asp700I	GAANNNNTTC	2 cut(s)	1704, 2172
AspLEI	GCGC	3 cut(s)	7, 275, 299
AspS9I	GGNCC	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	1253, 1750
AsuII	TTCGAA	1 cut(s)	217
AsuNHI	GCTAGC	2 cut(s)	874, 1525
AvaI	CYCGRG	1 cut(s)	2148
BamHI	GGATCC	2 cut(s)	925, 2065
BanII	GRGCYC	1 cut(s)	31
BauI	CACGAG	1 cut(s)	720
BbsI	GAAGAC	2 cut(s)	374, 1500
Bbv12I	GWGCWC	2 cut(s)	31, 1819
BbvCI	CCTCAGC	1 cut(s)	2112
BbvI	GCAGC	8 cut(s)	188, 196, 262, 1444, 1460, 1694, 2095, 2170
BccI	CCATC	5 cut(s)	686, 981, 1040, 1148, 1805
BceAI	ACGGC	3 cut(s)	303, 486, 514
BciT130I	CCWGG	3 cut(s)	169, 1518, 2024
BciVI	GTATCC	2 cut(s)	501, 913
BclI	TGATCA	3 cut(s)	301, 900, 2193
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	3 cut(s)	13, 98, 545
BcuI	ACTAGT	1 cut(s)	1477
BfaI	CTAG	7 cut(s)	39, 198, 407, 875, 1320, 1478, 1526
BfmI	CTRYAG	2 cut(s)	607, 1999
BfoI	RGCGCY	3 cut(s)	8, 276, 300
BfrI	CTTAAG	1 cut(s)	1234
BfuI	GTATCC	2 cut(s)	501, 913
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	9 cut(s)	202, 210, 276, 279, 1449, 1458, 1683, 2109, 2184
BlsI	GCNGC	9 cut(s)	203, 211, 277, 280, 1450, 1459, 1684, 2110, 2185
Bme1390I	CCNGG	4 cut(s)	169, 348, 1518, 2024
BmeT110I	CYCGRG	1 cut(s)	2148
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	3 cut(s)	927, 1144, 2067
BmrFI	CCNGG	4 cut(s)	169, 348, 1518, 2024
BmsI	GCATC	7 cut(s)	495, 532, 1075, 1789, 2003, 2025, 2095
BmtI	GCTAGC	2 cut(s)	878, 1529
BpiI	GAAGAC	2 cut(s)	374, 1500
BpmI	CTGGAG	2 cut(s)	1055, 1611
Bpu10I	CCTNAGC	1 cut(s)	2112
Bpu14I	TTCGAA	1 cut(s)	217
BpuEI	CTTGAG	2 cut(s)	414, 1427
BpuMI	CCSGG	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	1127
BsaBI	GATNNNNATC	3 cut(s)	522, 924, 1787
BsaJI	CCNNGG	7 cut(s)	167, 255, 285, 502, 1192, 1516, 2023
BsaWI	WCCGGW	2 cut(s)	368, 2160
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 174, 1646
Bse1I	ACTGG	3 cut(s)	471, 1072, 1413
Bse8I	GATNNNNATC	3 cut(s)	522, 924, 1787
BseAI	TCCGGA	1 cut(s)	2160
BseBI	CCWGG	3 cut(s)	169, 1518, 2024
BseDI	CCNNGG	7 cut(s)	167, 255, 285, 502, 1192, 1516, 2023
BseGI	GGATG	5 cut(s)	523, 1396, 1821, 1994, 2107
BseJI	GATNNNNATC	3 cut(s)	522, 924, 1787
BseLI	CCNNNNNNNGG	3 cut(s)	173, 174, 1646
BseMII	CTCAG	4 cut(s)	8, 14, 654, 2103
BseNI	ACTGG	3 cut(s)	471, 1072, 1413
BseX3I	CGGCCG	1 cut(s)	499
BseXI	GCAGC	8 cut(s)	188, 196, 262, 1444, 1460, 1694, 2095, 2170
BseYI	CCCAGC	1 cut(s)	1105
BsgI	GTGCAG	1 cut(s)	2169
Bsh1285I	CGRYCG	1 cut(s)	502
BshFI	GGCC	7 cut(s)	68, 281, 346, 470, 501, 1308, 2022
BsiEI	CGRYCG	1 cut(s)	502
BsiHKAI	GWGCWC	2 cut(s)	31, 1819
BsiHKCI	CYCGRG	1 cut(s)	2148
BsiSI	CCGG	3 cut(s)	348, 369, 2161
BslFI	GGGAC	3 cut(s)	108, 377, 1688
BslI	CCNNNNNNNGG	3 cut(s)	173, 174, 1646
BsmAI	GTCTC	3 cut(s)	13, 98, 545
BsmFI	GGGAC	3 cut(s)	108, 377, 1688
BsmI	GAATGC	1 cut(s)	2004
BsnI	GGCC	7 cut(s)	68, 281, 346, 470, 501, 1308, 2022
BsoBI	CYCGRG	1 cut(s)	2148
Bsp119I	TTCGAA	1 cut(s)	217
Bsp1286I	GDGCHC	2 cut(s)	31, 1819
Bsp13I	TCCGGA	1 cut(s)	2160
Bsp143I	GATC	6 cut(s)	301, 900, 925, 2065, 2193, 2203
BspACI	CCGC	2 cut(s)	212, 278
BspANI	GGCC	7 cut(s)	68, 281, 346, 470, 501, 1308, 2022
BspCNI	CTCAG	4 cut(s)	9, 15, 655, 2104
BspEI	TCCGGA	1 cut(s)	2160
BspHI	TCATGA	2 cut(s)	897, 1015
BspLI	GGNNCC	3 cut(s)	927, 1144, 2067
BspOI	GCTAGC	2 cut(s)	878, 1529
BspPI	GGATC	5 cut(s)	920, 933, 2060, 2073, 2211
BspT104I	TTCGAA	1 cut(s)	217
BspTI	CTTAAG	1 cut(s)	1234
BsrI	ACTGG	3 cut(s)	471, 1072, 1413
BssECI	CCNNGG	7 cut(s)	167, 255, 285, 502, 1192, 1516, 2023
BssMI	GATC	6 cut(s)	301, 900, 925, 2065, 2193, 2203
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	1 cut(s)	1192
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	3 cut(s)	169, 1518, 2024
Bst4CI	ACNGT	3 cut(s)	556, 565, 1102
Bst6I	CTCTTC	4 cut(s)	112, 1017, 1339, 1368
BstAFI	CTTAAG	1 cut(s)	1234
BstBAI	YACGTR	1 cut(s)	1127
BstBI	TTCGAA	1 cut(s)	217
BstC8I	GCNNGC	5 cut(s)	573, 876, 1527, 1932, 2188
BstDEI	CTNAG	7 cut(s)	17, 23, 325, 663, 908, 1643, 2112
BstDSI	CCRYGG	2 cut(s)	285, 502
BstEII	GGTNACC	1 cut(s)	250
BstF5I	GGATG	5 cut(s)	523, 1396, 1821, 1994, 2107
BstH2I	RGCGCY	3 cut(s)	8, 276, 300
BstHHI	GCGC	3 cut(s)	7, 275, 299
BstKTI	GATC	6 cut(s)	304, 903, 928, 2068, 2196, 2206
BstMAI	GTCTC	3 cut(s)	13, 98, 545
BstMBI	GATC	6 cut(s)	301, 900, 925, 2065, 2193, 2203
BstMCI	CGRYCG	1 cut(s)	502
BstMWI	GCNNNNNNNGC	8 cut(s)	287, 296, 1445, 1454, 1457, 1466, 2114, 2196
BstNI	CCWGG	3 cut(s)	169, 1518, 2024
BstNSI	RCATGY	3 cut(s)	575, 1250, 1269
BstPI	GGTNACC	1 cut(s)	250
BstSCI	CCNGG	4 cut(s)	167, 346, 1516, 2022
BstSFI	CTRYAG	2 cut(s)	607, 1999
BstSNI	TACGTA	1 cut(s)	1127
BstV1I	GCAGC	8 cut(s)	188, 196, 262, 1444, 1460, 1694, 2095, 2170
BstV2I	GAAGAC	2 cut(s)	374, 1500
BstX2I	RGATCY	2 cut(s)	925, 2065
BstXI	CCANNNNNNTGG	1 cut(s)	1154
BstYI	RGATCY	2 cut(s)	925, 2065
BstZI	CGGCCG	1 cut(s)	499
BsuI	GTATCC	2 cut(s)	501, 913
BsuRI	GGCC	7 cut(s)	68, 281, 346, 470, 501, 1308, 2022
BtgI	CCRYGG	2 cut(s)	285, 502
BtgZI	GCGATG	1 cut(s)	1700
BtsCI	GGATG	5 cut(s)	523, 1396, 1821, 1994, 2107
BtsIMutI	CAGTG	2 cut(s)	1079, 1107
Cac8I	GCNNGC	5 cut(s)	573, 876, 1527, 1932, 2188
CciI	TCATGA	2 cut(s)	897, 1015
CfoI	GCGC	3 cut(s)	7, 275, 299
Cfr13I	GGNCC	1 cut(s)	345
CseI	GACGC	2 cut(s)	1629, 1961
Csp6I	GTAC	2 cut(s)	1128, 1406
CspCI	CAANNNNNGTGG	4 cut(s)	484, 519, 571, 606
CviQI	GTAC	2 cut(s)	1128, 1406
DdeI	CTNAG	7 cut(s)	17, 23, 325, 663, 908, 1643, 2112
DpnI	GATC	6 cut(s)	303, 902, 927, 2067, 2195, 2205
DpnII	GATC	6 cut(s)	301, 900, 925, 2065, 2193, 2203
DraI	TTTAAA	4 cut(s)	772, 823, 885, 1756
DrdI	GACNNNNNNGTC	1 cut(s)	479
DseDI	GACNNNNNNGTC	1 cut(s)	479
EaeI	YGGCCR	2 cut(s)	468, 499
EagI	CGGCCG	1 cut(s)	499
Eam1104I	CTCTTC	4 cut(s)	112, 1017, 1339, 1368
EarI	CTCTTC	4 cut(s)	112, 1017, 1339, 1368
Ecl136II	GAGCTC	1 cut(s)	29
EclXI	CGGCCG	1 cut(s)	499
Eco105I	TACGTA	1 cut(s)	1127
Eco130I	CCWWGG	1 cut(s)	1192
Eco147I	AGGCCT	1 cut(s)	2022
Eco24I	GRGCYC	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	1856
Eco47III	AGCGCT	1 cut(s)	274
Eco52I	CGGCCG	1 cut(s)	499
Eco53kI	GAGCTC	1 cut(s)	29
Eco57I	CTGAAG	3 cut(s)	1572, 1834, 1955
Eco88I	CYCGRG	1 cut(s)	2148
Eco91I	GGTNACC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	29
EcoO65I	GGTNACC	1 cut(s)	250
EcoRII	CCWGG	3 cut(s)	167, 1516, 2022
EcoRV	GATATC	1 cut(s)	1856
EcoT14I	CCWWGG	1 cut(s)	1192
EcoT22I	ATGCAT	3 cut(s)	525, 1090, 1996
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	1192
FalI	AAGNNNNNCTT	2 cut(s)	1359, 1391
FaqI	GGGAC	3 cut(s)	108, 377, 1688
FbaI	TGATCA	3 cut(s)	301, 900, 2193
Fnu4HI	GCNGC	9 cut(s)	202, 210, 276, 279, 1449, 1458, 1683, 2109, 2184
FokI	GGATG	5 cut(s)	510, 1383, 1808, 1981, 2114
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	9 cut(s)	202, 210, 276, 279, 1449, 1458, 1683, 2109, 2184
FspBI	CTAG	7 cut(s)	39, 198, 407, 875, 1320, 1478, 1526
GlaI	GCGC	3 cut(s)	6, 274, 298
GluI	GCNGC	9 cut(s)	202, 210, 276, 279, 1449, 1458, 1683, 2109, 2184
GsaI	CCCAGC	1 cut(s)	1109
GsuI	CTGGAG	2 cut(s)	1055, 1611
HaeII	RGCGCY	3 cut(s)	8, 276, 300
HaeIII	GGCC	7 cut(s)	68, 281, 346, 470, 501, 1308, 2022
HapII	CCGG	3 cut(s)	348, 369, 2161
HgaI	GACGC	2 cut(s)	1629, 1961
HhaI	GCGC	3 cut(s)	7, 275, 299
Hin6I	GCGC	3 cut(s)	5, 273, 297
HinP1I	GCGC	3 cut(s)	5, 273, 297
HincII	GTYRAC	1 cut(s)	1173
HindII	GTYRAC	1 cut(s)	1173
HindIII	AAGCTT	3 cut(s)	1164, 1208, 1967
HinfI	GANTC	8 cut(s)	307, 792, 798, 1050, 1412, 1556, 1583, 1717
HpaI	GTTAAC	1 cut(s)	1173
HpaII	CCGG	3 cut(s)	348, 369, 2161
HphI	GGTGA	2 cut(s)	1253, 1750
Hpy166II	GTNNAC	1 cut(s)	1173
Hpy8I	GTNNAC	1 cut(s)	1173
HpyAV	CCTTC	9 cut(s)	181, 314, 1250, 1298, 1571, 1735, 1990, 1995, 2158
HpyCH4III	ACNGT	3 cut(s)	556, 565, 1102
HpyCH4IV	ACGT	2 cut(s)	192, 1126
HpyCH4V	TGCA	9 cut(s)	523, 571, 962, 1088, 1460, 1601, 1884, 1994, 2186
HpyF10VI	GCNNNNNNNGC	8 cut(s)	287, 296, 1445, 1454, 1457, 1466, 2114, 2196
HpyF3I	CTNAG	7 cut(s)	17, 23, 325, 663, 908, 1643, 2112
HpySE526I	ACGT	2 cut(s)	192, 1126
HspAI	GCGC	3 cut(s)	5, 273, 297
Kpn2I	TCCGGA	1 cut(s)	2160
Ksp22I	TGATCA	3 cut(s)	301, 900, 2193
KspAI	GTTAAC	1 cut(s)	1173
Kzo9I	GATC	6 cut(s)	301, 900, 925, 2065, 2193, 2203
LmnI	GCTCC	1 cut(s)	871
Lsp1109I	GCAGC	8 cut(s)	188, 196, 262, 1444, 1460, 1694, 2095, 2170
LweI	GCATC	7 cut(s)	495, 532, 1075, 1789, 2003, 2025, 2095
MaeI	CTAG	7 cut(s)	39, 198, 407, 875, 1320, 1478, 1526
MaeII	ACGT	2 cut(s)	192, 1126
MaeIII	GTNAC	7 cut(s)	81, 250, 529, 676, 733, 1392, 1772
MalI	GATC	6 cut(s)	303, 902, 927, 2067, 2195, 2205
MboI	GATC	6 cut(s)	301, 900, 925, 2065, 2193, 2203
MfeI	CAATTG	2 cut(s)	762, 852
MflI	RGATCY	2 cut(s)	925, 2065
MhlI	GDGCHC	2 cut(s)	31, 1819
Mph1103I	ATGCAT	3 cut(s)	525, 1090, 1996
MroI	TCCGGA	1 cut(s)	2160
MroXI	GAANNNNTTC	2 cut(s)	1704, 2172
MslI	CAYNNNNRTG	5 cut(s)	88, 576, 1152, 1401, 2047
MspA1I	CMGCKG	1 cut(s)	1589
MspCI	CTTAAG	1 cut(s)	1234
MspI	CCGG	3 cut(s)	348, 369, 2161
MspR9I	CCNGG	4 cut(s)	169, 348, 1518, 2024
MunI	CAATTG	2 cut(s)	762, 852
Mva1269I	GAATGC	1 cut(s)	2004
MvaI	CCWGG	3 cut(s)	169, 1518, 2024
MwoI	GCNNNNNNNGC	8 cut(s)	287, 296, 1445, 1454, 1457, 1466, 2114, 2196
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	6 cut(s)	301, 900, 925, 2065, 2193, 2203
NheI	GCTAGC	2 cut(s)	874, 1525
NlaIV	GGNNCC	3 cut(s)	927, 1144, 2067
NmuCI	GTSAC	2 cut(s)	81, 733
NsiI	ATGCAT	3 cut(s)	525, 1090, 1996
NspI	RCATGY	3 cut(s)	575, 1250, 1269
NspV	TTCGAA	1 cut(s)	217
PaeI	GCATGC	1 cut(s)	575
PagI	TCATGA	2 cut(s)	897, 1015
PceI	AGGCCT	1 cut(s)	2022
PciI	ACATGT	1 cut(s)	1265
PctI	GAATGC	1 cut(s)	2004
PdmI	GAANNNNTTC	2 cut(s)	1704, 2172
PfeI	GAWTC	8 cut(s)	307, 792, 798, 1050, 1412, 1556, 1583, 1717
PkrI	GCNGC	9 cut(s)	203, 211, 277, 280, 1450, 1459, 1684, 2110, 2185
Ppu21I	YACGTR	1 cut(s)	1127
PscI	ACATGT	1 cut(s)	1265
PshBI	ATTAAT	1 cut(s)	1059
Psp124BI	GAGCTC	1 cut(s)	31
Psp6I	CCWGG	3 cut(s)	167, 1516, 2022
PspEI	GGTNACC	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	1105
PspGI	CCWGG	3 cut(s)	167, 1516, 2022
PspN4I	GGNNCC	3 cut(s)	927, 1144, 2067
PspPI	GGNCC	1 cut(s)	345
PsuI	RGATCY	2 cut(s)	925, 2065
PvuII	CAGCTG	1 cut(s)	1589
RsaI	GTAC	2 cut(s)	1129, 1407
RsaNI	GTAC	2 cut(s)	1128, 1406
RseI	CAYNNNNRTG	5 cut(s)	88, 576, 1152, 1401, 2047
SacI	GAGCTC	1 cut(s)	31
SatI	GCNGC	9 cut(s)	202, 210, 276, 279, 1449, 1458, 1683, 2109, 2184
Sau3AI	GATC	6 cut(s)	301, 900, 925, 2065, 2193, 2203
Sau96I	GGNCC	1 cut(s)	345
ScrFI	CCNGG	4 cut(s)	169, 348, 1518, 2024
SduI	GDGCHC	2 cut(s)	31, 1819
SfaNI	GCATC	7 cut(s)	495, 532, 1075, 1789, 2003, 2025, 2095
SfcI	CTRYAG	2 cut(s)	607, 1999
SfuI	TTCGAA	1 cut(s)	217
SmiMI	CAYNNNNRTG	5 cut(s)	88, 576, 1152, 1401, 2047
SmlI	CTYRAG	3 cut(s)	429, 1234, 1442
SmoI	CTYRAG	3 cut(s)	429, 1234, 1442
SnaBI	TACGTA	1 cut(s)	1127
SpeI	ACTAGT	1 cut(s)	1477
SphI	GCATGC	1 cut(s)	575
SseBI	AGGCCT	1 cut(s)	2022
SsiI	CCGC	2 cut(s)	212, 278
SspMI	CTAG	7 cut(s)	39, 198, 407, 875, 1320, 1478, 1526
SstI	GAGCTC	1 cut(s)	31
StuI	AGGCCT	1 cut(s)	2022
StyD4I	CCNGG	4 cut(s)	167, 346, 1516, 2022
StyI	CCWWGG	1 cut(s)	1192
TaaI	ACNGT	3 cut(s)	556, 565, 1102
TaiI	ACGT	2 cut(s)	195, 1129
TaqI	TCGA	2 cut(s)	181, 217
TatI	WGTACW	1 cut(s)	1405
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	8 cut(s)	307, 792, 798, 1050, 1412, 1556, 1583, 1717
TscAI	CASTG	2 cut(s)	1079, 1107
TseFI	GTSAC	2 cut(s)	81, 733
TseI	GCWGC	8 cut(s)	201, 209, 275, 1448, 1457, 1682, 2108, 2183
Tsp45I	GTSAC	2 cut(s)	81, 733
TspDTI	ATGAA	9 cut(s)	52, 67, 223, 374, 414, 963, 1004, 1032, 1713
TspGWI	ACGGA	2 cut(s)	938, 1152
TspRI	CASTG	2 cut(s)	1079, 1107
Vha464I	CTTAAG	1 cut(s)	1234
VspI	ATTAAT	1 cut(s)	1059
XapI	RAATTY	3 cut(s)	767, 1653, 1704
XceI	RCATGY	3 cut(s)	575, 1250, 1269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XmnI	GAANNNNTTC	2 cut(s)	1704, 2172
XspI	CTAG	7 cut(s)	39, 198, 407, 875, 1320, 1478, 1526
Zsp2I	ATGCAT	3 cut(s)	525, 1090, 1996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.