Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006623

Physical Location & Seq

Genomic Coordinates Reverse (-)

5642576 .. 5645904

Gene Structure 3329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGACGGGTACCACAATTTCAGCCGGCTATTCGGCATCAACCAAGGTATTGATGAGTCGTTAAAATCATTTGCCACACGATGGAGGACCGCCACATCAAGATGTTGGGATCTTGACAAAACAATGGTGTTGGCGGCCTTCAAGCAGCTTATCACACGAGCAAGAAAGCGTTATGAGCGCGCTAACCACCCAAAAGAAGAATTCAACATCTGCTATGATCGACCCACCAAAATAGCCAAGACCGGTTGGGAACCGGTCACTTTCTCCGAGGAGGAAGAATTGTTACAAAATCATAGTGAGGAGATTGAACGTGAAGAGAAGAGAGTCTTTGAAGTACAGAAATTGGTTATAGACAAGGAGAGGGAACCGAAGAAGTACTGTGAGGATGCTAAGTTGAAAGTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

16.18

Weight (kDa)

6.85

Isoelectric Point (pI)

55.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10270 AT3G10270 AT5G04130
fragaria_vesca	FvH4_6g25390 FvH4_6g25390 FvH4_6g25390
malus_domestica	MD12G1095800.v1.1 MD14G1090600.v1.1
prunus_persica	Prupe.7G033800_v2.0.a1
pyrus_communis	pycom12g08270
rosa_chinensis	RchiOBHm_Chr2g0125831
rosa_laevigata	RLG00000018881
rosa_multiflora	Rmu_co8103446.1_g000001 Rmu_sc0009079.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117620 Rroxscaffold_2G00117680 Rroxscaffold_2G00125340 Rroxscaffold_2G00125370 Rroxscaffold_3G00238600 Rroxscaffold_4G00318520 Rroxscaffold_4G00324150 Rroxscaffold_5G00337460
rosa_rugosa	Rorug02G0259400
rosa_samantha	Rh2AG317700 Rh2BG326100
rosa_wichuraiana	Rw2G025700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	1 cut(s)	81
AccII	CGCG	1 cut(s)	180
AciI	CCGC	2 cut(s)	90, 134
AclWI	GGATC	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	3 cut(s)	11, 336, 377
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgeI	ACCGGT	2 cut(s)	242, 253
AgsI	TTSAA	5 cut(s)	142, 205, 308, 332, 397
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	145
ApoI	RAATTY	1 cut(s)	200
AsiGI	ACCGGT	2 cut(s)	242, 253
Asp718I	GGTACC	1 cut(s)	9
AspLEI	GCGC	2 cut(s)	180, 182
AspS9I	GGNCC	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	9
BarI	GAAGNNNNNNTAC	2 cut(s)	267, 299
BauI	CACGAG	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	1 cut(s)	75
BisI	GCNGC	2 cut(s)	135, 146
BlsI	GCNGC	2 cut(s)	136, 147
BmcAI	AGTACT	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	3 cut(s)	11, 252, 366
BmsI	GCATC	2 cut(s)	45, 376
BsaJI	CCNNGG	2 cut(s)	43, 267
BsaWI	WCCGGW	2 cut(s)	242, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	3 cut(s)	24, 242, 253
BseDI	CCNNGG	2 cut(s)	43, 267
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	81
BsePI	GCGCGC	1 cut(s)	178
BseRI	GAGGAG	2 cut(s)	284, 314
BseXI	GCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	9
BshTI	ACCGGT	2 cut(s)	242, 253
BsiSI	CCGG	3 cut(s)	25, 243, 254
BslI	CCNNNNNNNGG	1 cut(s)	81
BsnI	GGCC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	109, 217
BspACI	CCGC	2 cut(s)	90, 134
BspANI	GGCC	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	11, 252, 366
BspPI	GGATC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	9
BsrFI	RCCGGY	3 cut(s)	24, 242, 253
BssAI	RCCGGY	3 cut(s)	24, 242, 253
BssECI	CCNNGG	2 cut(s)	43, 267
BssHII	GCGCGC	1 cut(s)	178
BssMI	GATC	2 cut(s)	109, 217
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	43
Bst2BI	CACGAG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	2 cut(s)	309, 314
BstC8I	GCNNGC	2 cut(s)	26, 180
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	2 cut(s)	180, 182
BstKTI	GATC	2 cut(s)	112, 220
BstMBI	GATC	2 cut(s)	109, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	26, 180
CfoI	GCGC	2 cut(s)	180, 182
Cfr10I	RCCGGY	3 cut(s)	24, 242, 253
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	3 cut(s)	10, 335, 376
CspAI	ACCGGT	2 cut(s)	242, 253
CviJI	RGCY	5 cut(s)	24, 28, 137, 148, 236
CviKI_1	RGCY	5 cut(s)	24, 28, 137, 148, 236
CviQI	GTAC	3 cut(s)	10, 335, 376
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	2 cut(s)	111, 219
DpnII	GATC	2 cut(s)	109, 217
Eam1104I	CTCTTC	2 cut(s)	309, 314
EarI	CTCTTC	2 cut(s)	309, 314
Eco130I	CCWWGG	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	43
FaiI	YATR	4 cut(s)	174, 216, 294, 350
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
Fnu4HI	GCNGC	2 cut(s)	135, 146
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	2 cut(s)	135, 146
GlaI	GCGC	2 cut(s)	179, 181
GluI	GCNGC	2 cut(s)	135, 146
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	3 cut(s)	25, 243, 254
HhaI	GCGC	2 cut(s)	180, 182
Hin6I	GCGC	2 cut(s)	178, 180
HinP1I	GCGC	2 cut(s)	178, 180
HinfI	GANTC	2 cut(s)	56, 324
HpaII	CCGG	3 cut(s)	25, 243, 254
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	2 cut(s)	99, 113
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	1 cut(s)	310
HspAI	GCGC	2 cut(s)	178, 180
KpnI	GGTACC	1 cut(s)	13
KroI	GCCGGC	1 cut(s)	24
KroNI	GCCGGC	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	109, 217
LpnPI	CCDG	3 cut(s)	38, 256, 267
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	2 cut(s)	45, 376
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	256, 282
MalI	GATC	2 cut(s)	111, 219
MboI	GATC	2 cut(s)	109, 217
MboII	GAAGA	5 cut(s)	209, 287, 326, 331, 382
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	4 cut(s)	16, 200, 278, 341
MlyI	GAGTC	2 cut(s)	65, 333
MnlI	CCTC	6 cut(s)	78, 262, 265, 292, 354, 376
MroNI	GCCGGC	1 cut(s)	24
MseI	TTAA	1 cut(s)	62
MslI	CAYNNNNRTG	1 cut(s)	100
MspI	CCGG	3 cut(s)	25, 243, 254
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	175
NaeI	GCCGGC	1 cut(s)	26
NdeII	GATC	2 cut(s)	109, 217
NgoMIV	GCCGGC	1 cut(s)	24
NlaIV	GGNNCC	3 cut(s)	11, 252, 366
NmuCI	GTSAC	1 cut(s)	256
PauI	GCGCGC	1 cut(s)	178
PdiI	GCCGGC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	81
PinAI	ACCGGT	2 cut(s)	242, 253
PkrI	GCNGC	2 cut(s)	136, 147
PleI	GAGTC	2 cut(s)	64, 332
PpsI	GAGTC	2 cut(s)	64, 332
PspN4I	GGNNCC	3 cut(s)	11, 252, 366
PspPI	GGNCC	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	109
PteI	GCGCGC	1 cut(s)	178
RsaI	GTAC	3 cut(s)	11, 336, 377
RsaNI	GTAC	3 cut(s)	10, 335, 376
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	2 cut(s)	135, 146
Sau3AI	GATC	2 cut(s)	109, 217
Sau96I	GGNCC	1 cut(s)	87
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	2 cut(s)	65, 333
SetI	ASST	3 cut(s)	49, 150, 313
SfaNI	GCATC	2 cut(s)	45, 376
SinI	GGWCC	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	100
Sse9I	AATT	4 cut(s)	16, 200, 278, 341
SsiI	CCGC	2 cut(s)	90, 134
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	1 cut(s)	220
TasI	AATT	4 cut(s)	16, 200, 278, 341
TatI	WGTACW	2 cut(s)	334, 375
TauI	GCSGC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	256
Van91I	CCANNNNNTGG	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	87
XapI	RAATTY	1 cut(s)	200
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.