Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8103446.1

Orthogroup ID

OG0006623

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 571

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8103446.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 397 bp

atggcgcttgttcttctgagactgagagctcattctcctagtcctccttatcttgttcgcttcatggccttacgcttcatgtcacactcatgtctccaccctcactcttcctcccttgctcgtccctccctcttgttcagcccaccagcaccagcaccagcagcacccaggattgggcttcgattgaaggacgttcctagctgctgtgctgcggttcgaaatgtgagagctttcatgtcgtccagctcggtaaccgaggcttttcaaggaagcgctgcggcctccacggcttatggcgctgatcagattcaggttttagaaggcttagaggctgttagaaagaggcccggaatgtatattggggacaccggatttcgtggtcttcatcatctggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003916 GO:0003918 GO:0005575 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008094 GO:0008150 GO:0008152 GO:0009295 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0061505 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseB DNA_gyraseB_C HATPase_c Toprim

Protein Analysis

132

Amino Acids

14.18

Weight (kDa)

10.48

Isoelectric Point (pI)

67.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10270 AT3G10270 AT5G04130
fragaria_vesca	FvH4_6g25390 FvH4_6g25390 FvH4_6g25390
malus_domestica	MD12G1095800.v1.1 MD14G1090600.v1.1
prunus_persica	Prupe.7G033800_v2.0.a1
pyrus_communis	pycom12g08270
rosa_chinensis	RchiOBHm_Chr2g0125831
rosa_laevigata	RLG00000018881
rosa_multiflora	Rmu_co8103446.1_g000001 Rmu_sc0009079.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117620 Rroxscaffold_2G00117680 Rroxscaffold_2G00125340 Rroxscaffold_2G00125370 Rroxscaffold_3G00238600 Rroxscaffold_4G00318520 Rroxscaffold_4G00324150 Rroxscaffold_5G00337460
rosa_rugosa	Rorug02G0259400
rosa_samantha	Rh2AG317700 Rh2BG326100
rosa_wichuraiana	Rw2G025700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	212, 278
AfeI	AGCGCT	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	173, 174
AgsI	TTSAA	2 cut(s)	187, 266
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	4 cut(s)	29, 201, 230, 246
AluI	AGCT	4 cut(s)	29, 201, 230, 246
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	2 cut(s)	13, 98
Aor51HI	AGCGCT	1 cut(s)	274
AoxI	GGCC	3 cut(s)	66, 279, 344
ApeKI	GCWGC	4 cut(s)	161, 201, 209, 275
AspLEI	GCGC	3 cut(s)	7, 275, 299
AspS9I	GGNCC	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	348
AsuII	TTCGAA	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	4 cut(s)	173, 188, 196, 262
BceAI	ACGGC	1 cut(s)	303
BciT130I	CCWGG	1 cut(s)	169
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	2 cut(s)	13, 98
BfaI	CTAG	2 cut(s)	39, 198
BfoI	RGCGCY	3 cut(s)	8, 276, 300
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	5 cut(s)	162, 202, 210, 276, 279
BlsI	GCNGC	5 cut(s)	163, 203, 211, 277, 280
Bme1390I	CCNGG	2 cut(s)	169, 348
BmgT120I	GGNCC	1 cut(s)	345
BmrFI	CCNGG	2 cut(s)	169, 348
BpiI	GAAGAC	1 cut(s)	374
Bpu14I	TTCGAA	1 cut(s)	217
BpuMI	CCSGG	1 cut(s)	348
BsaJI	CCNNGG	3 cut(s)	167, 255, 285
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 174
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	167, 255, 285
BseLI	CCNNNNNNNGG	2 cut(s)	173, 174
BseMII	CTCAG	2 cut(s)	8, 14
BseXI	GCAGC	4 cut(s)	173, 188, 196, 262
BshFI	GGCC	3 cut(s)	68, 281, 346
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	348, 369
BslFI	GGGAC	2 cut(s)	108, 377
BslI	CCNNNNNNNGG	2 cut(s)	173, 174
BsmAI	GTCTC	2 cut(s)	13, 98
BsmFI	GGGAC	2 cut(s)	108, 377
BsnI	GGCC	3 cut(s)	68, 281, 346
Bsp119I	TTCGAA	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	2 cut(s)	212, 278
BspANI	GGCC	3 cut(s)	68, 281, 346
BspCNI	CTCAG	2 cut(s)	9, 15
BspT104I	TTCGAA	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	167, 255, 285
BssMI	GATC	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	112
BstBI	TTCGAA	1 cut(s)	217
BstDEI	CTNAG	3 cut(s)	17, 23, 325
BstDSI	CCRYGG	1 cut(s)	285
BstEII	GGTNACC	1 cut(s)	250
BstH2I	RGCGCY	3 cut(s)	8, 276, 300
BstHHI	GCGC	3 cut(s)	7, 275, 299
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	2 cut(s)	13, 98
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 287, 296
BstNI	CCWGG	1 cut(s)	169
BstPI	GGTNACC	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	167, 346
BstV1I	GCAGC	4 cut(s)	173, 188, 196, 262
BstV2I	GAAGAC	1 cut(s)	374
BsuRI	GGCC	3 cut(s)	68, 281, 346
BtgI	CCRYGG	1 cut(s)	285
CfoI	GCGC	3 cut(s)	7, 275, 299
Cfr13I	GGNCC	1 cut(s)	345
CviAII	CATG	4 cut(s)	64, 79, 90, 235
DdeI	CTNAG	3 cut(s)	17, 23, 325
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	31
Eco47III	AGCGCT	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	29
Eco91I	GGTNACC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	29
EcoO65I	GGTNACC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	4 cut(s)	67, 82, 93, 238
FaiI	YATR	6 cut(s)	65, 80, 91, 236, 294, 357
FaqI	GGGAC	2 cut(s)	108, 377
FatI	CATG	4 cut(s)	63, 78, 89, 234
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	5 cut(s)	162, 202, 210, 276, 279
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	5 cut(s)	162, 202, 210, 276, 279
FspBI	CTAG	2 cut(s)	39, 198
GlaI	GCGC	3 cut(s)	6, 274, 298
GluI	GCNGC	5 cut(s)	162, 202, 210, 276, 279
HaeII	RGCGCY	3 cut(s)	8, 276, 300
HaeIII	GGCC	3 cut(s)	68, 281, 346
HapII	CCGG	2 cut(s)	348, 369
HhaI	GCGC	3 cut(s)	7, 275, 299
Hin1II	CATG	4 cut(s)	67, 82, 93, 238
Hin6I	GCGC	3 cut(s)	5, 273, 297
HinP1I	GCGC	3 cut(s)	5, 273, 297
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	2 cut(s)	348, 369
Hpy188I	TCNGA	2 cut(s)	18, 306
HpyAV	CCTTC	2 cut(s)	181, 314
HpyCH4IV	ACGT	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 287, 296
HpyF3I	CTNAG	3 cut(s)	17, 23, 325
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	67, 82, 93, 238
HspAI	GCGC	3 cut(s)	5, 273, 297
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	301
Lsp1109I	GCAGC	4 cut(s)	173, 188, 196, 262
MaeI	CTAG	2 cut(s)	39, 198
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	81, 250
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	3 cut(s)	5, 99, 374
MhlI	GDGCHC	1 cut(s)	31
MnlI	CCTC	9 cut(s)	54, 111, 121, 136, 140, 250, 292, 322, 336
MslI	CAYNNNNRTG	1 cut(s)	88
MspI	CCGG	2 cut(s)	348, 369
MspR9I	CCNGG	2 cut(s)	169, 348
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	3 cut(s)	161, 287, 296
NciI	CCSGG	1 cut(s)	348
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	4 cut(s)	67, 82, 93, 238
NmuCI	GTSAC	1 cut(s)	81
NspV	TTCGAA	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	5 cut(s)	163, 203, 211, 277, 280
Psp124BI	GAGCTC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	167
PspEI	GGTNACC	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	167
PspPI	GGNCC	1 cut(s)	345
RseI	CAYNNNNRTG	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	31
SatI	GCNGC	5 cut(s)	162, 202, 210, 276, 279
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	345
ScrFI	CCNGG	2 cut(s)	169, 348
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	6 cut(s)	31, 195, 203, 232, 248, 315
SfuI	TTCGAA	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	88
SsiI	CCGC	2 cut(s)	212, 278
SspMI	CTAG	2 cut(s)	39, 198
SstI	GAGCTC	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	167, 346
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	181, 217
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	307
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	4 cut(s)	161, 201, 209, 275
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	4 cut(s)	52, 67, 223, 374
XspI	CTAG	2 cut(s)	39, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.