Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006623

Physical Location & Seq

Genomic Coordinates Forward (+)

60092973 .. 60093654

Gene Structure 682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAATGAGTTTTTTTTTGGAGTTGAGAAGCTGTTTGATGAGAAAGTACAAGAGGCTACTGGAATAATGAGATTGTTACAAAATCTTAGTGAGGAGATTGAACGTGAAGAGAAGAGAGTTTTTGAAGTACAGAAATTGGTTATAGACAAGGAGAGAGAACTGAAGAAGTACTGTGAGGATGCTACATTGAAAATGGAGCTCAAGGCGATTATGCATCCTATAATCAAGAAATTTACATTGGAGACTGTGTTGACGGTTTTGCATGCTGGTGGCAAGTTTAGTGGTTCAAGTAGTGGCTATAGTGTGTCTGGTGGATTACATGGTGTGGGTTTATCAGGACTGAAAGCTTCGTTAACAAGAACACTGAATAACCTTGGCAAGAAATCAAAGCTTATCAAGGATAAAGATATTACCTTAAGTGGTGAGCATGTAAGAGAAGGGCTGACATGTGTAGTTTCAGTCAAAGTTCCCAATCCAGAGTTTGAAGGCCAAACAAAGACTAGGTTGGGAAATCCAGAGGTGCGAAGAGTGGTTGATAATTCTCTTCAAGAGTATCTTATAGAATACTTGGAGTTACACCCCGATGTACTGGATTCAATCCTTTCCAAGTCCTTAAATGCTCTCAAGGCAGCTCGGCTGCAAAGAGGGCAAGGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003916 GO:0003918 GO:0005575 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008094 GO:0008150 GO:0008152 GO:0009295 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0017111 GO:0034641 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0051276 GO:0061505 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_gyraseB DNA_gyraseB_C HATPase_c Toprim

Protein Analysis

219

Amino Acids

24.51

Weight (kDa)

8.41

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_gyraseB	PF00204	105 - 213	1.9e-32	DNA gyrase B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10270 AT3G10270 AT5G04130
fragaria_vesca	FvH4_6g25390 FvH4_6g25390 FvH4_6g25390
malus_domestica	MD12G1095800.v1.1 MD14G1090600.v1.1
prunus_persica	Prupe.7G033800_v2.0.a1
pyrus_communis	pycom12g08270
rosa_chinensis	RchiOBHm_Chr2g0125831
rosa_laevigata	RLG00000018881
rosa_multiflora	Rmu_co8103446.1_g000001 Rmu_sc0009079.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117620 Rroxscaffold_2G00117680 Rroxscaffold_2G00125340 Rroxscaffold_2G00125370 Rroxscaffold_3G00238600 Rroxscaffold_4G00318520 Rroxscaffold_4G00324150 Rroxscaffold_5G00337460
rosa_rugosa	Rorug02G0259400
rosa_samantha	Rh2AG317700 Rh2BG326100
rosa_wichuraiana	Rw2G025700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	4 cut(s)	48, 129, 170, 588
AflII	CTTAAG	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	446
AgsI	TTSAA	7 cut(s)	101, 125, 190, 288, 485, 548, 597
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	5 cut(s)	31, 199, 347, 391, 632
AluI	AGCT	5 cut(s)	31, 199, 347, 391, 632
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	236
AoxI	GGCC	1 cut(s)	487
ApeKI	GCWGC	2 cut(s)	629, 637
ApoI	RAATTY	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	624, 641
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	2 cut(s)	501, 658
BfmI	CTRYAG	1 cut(s)	298
BfrI	CTTAAG	1 cut(s)	415
BisI	GCNGC	2 cut(s)	630, 638
BlsI	GCNGC	2 cut(s)	631, 639
BmcAI	AGTACT	1 cut(s)	170
BmsI	GCATC	2 cut(s)	169, 223
BpuEI	CTTGAG	2 cut(s)	185, 608
BsaJI	CCNNGG	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bse1I	ACTGG	2 cut(s)	64, 594
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	2 cut(s)	184, 214
BseNI	ACTGG	2 cut(s)	64, 594
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	624, 641
BshFI	GGCC	1 cut(s)	489
BsiHKAI	GWGCWC	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	489
Bsp1286I	GDGCHC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	489
BspTI	CTTAAG	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	64, 594
BssECI	CCNNGG	1 cut(s)	373
BssT1I	CCWWGG	1 cut(s)	373
Bst4CI	ACNGT	3 cut(s)	173, 247, 256
Bst6I	CTCTTC	4 cut(s)	102, 107, 520, 549
BstAFI	CTTAAG	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	184, 214
BstMAI	GTCTC	1 cut(s)	236
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 646
BstNSI	RCATGY	3 cut(s)	266, 431, 450
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	624, 641
BsuRI	GGCC	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	184, 214
BtsIMutI	CAGTG	1 cut(s)	362
Cac8I	GCNNGC	1 cut(s)	264
Csp6I	GTAC	4 cut(s)	47, 128, 169, 587
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	4 cut(s)	263, 320, 428, 447
CviQI	GTAC	4 cut(s)	47, 128, 169, 587
DdeI	CTNAG	1 cut(s)	86
Eam1104I	CTCTTC	4 cut(s)	102, 107, 520, 549
EarI	CTCTTC	4 cut(s)	102, 107, 520, 549
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	373
EcoT22I	ATGCAT	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	4 cut(s)	266, 323, 431, 450
FaiI	YATR	9 cut(s)	143, 212, 221, 264, 300, 321, 429, 448, 560
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FatI	CATG	4 cut(s)	262, 319, 427, 446
Fnu4HI	GCNGC	2 cut(s)	630, 638
FokI	GGATG	2 cut(s)	191, 201
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	2 cut(s)	630, 638
FspBI	CTAG	2 cut(s)	501, 658
GluI	GCNGC	2 cut(s)	630, 638
HaeIII	GGCC	1 cut(s)	489
Hin1II	CATG	4 cut(s)	266, 323, 431, 450
HincII	GTYRAC	2 cut(s)	252, 354
HindII	GTYRAC	2 cut(s)	252, 354
HindIII	AAGCTT	2 cut(s)	345, 389
HinfI	GANTC	1 cut(s)	593
HpaI	GTTAAC	1 cut(s)	354
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	2 cut(s)	252, 354
Hpy188III	TCNNGA	5 cut(s)	226, 336, 476, 515, 548
Hpy8I	GTNNAC	2 cut(s)	252, 354
HpyAV	CCTTC	2 cut(s)	431, 479
HpyCH4III	ACNGT	3 cut(s)	173, 247, 256
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	3 cut(s)	214, 262, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 646
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	4 cut(s)	266, 323, 431, 450
KspAI	GTTAAC	1 cut(s)	354
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	7 cut(s)	45, 252, 294, 321, 489, 528, 575
Lsp1109I	GCAGC	2 cut(s)	624, 641
LweI	GCATC	2 cut(s)	169, 223
MaeI	CTAG	2 cut(s)	501, 658
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	2 cut(s)	75, 573
MboII	GAAGA	5 cut(s)	119, 124, 175, 536, 537
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	3 cut(s)	134, 230, 538
MnlI	CCTC	5 cut(s)	46, 85, 169, 511, 638
Mph1103I	ATGCAT	1 cut(s)	216
MseI	TTAA	3 cut(s)	353, 416, 614
MslI	CAYNNNNRTG	2 cut(s)	267, 582
MspCI	CTTAAG	1 cut(s)	415
MwoI	GCNNNNNNNGC	2 cut(s)	626, 646
NlaIII	CATG	4 cut(s)	266, 323, 431, 450
NmeAIII	GCCGAG	1 cut(s)	613
NsiI	ATGCAT	1 cut(s)	216
NspI	RCATGY	3 cut(s)	266, 431, 450
PaeI	GCATGC	1 cut(s)	266
PciI	ACATGT	1 cut(s)	446
PfeI	GAWTC	1 cut(s)	593
PkrI	GCNGC	2 cut(s)	631, 639
PscI	ACATGT	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	201
RsaI	GTAC	4 cut(s)	48, 129, 170, 588
RsaNI	GTAC	4 cut(s)	47, 128, 169, 587
RseI	CAYNNNNRTG	2 cut(s)	267, 582
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	353, 416, 614
SatI	GCNGC	2 cut(s)	630, 638
ScaI	AGTACT	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	201
SfaNI	GCATC	2 cut(s)	169, 223
SfcI	CTRYAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	2 cut(s)	267, 582
SmlI	CTYRAG	3 cut(s)	200, 415, 623
SmoI	CTYRAG	3 cut(s)	200, 415, 623
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	3 cut(s)	134, 230, 538
SspMI	CTAG	2 cut(s)	501, 658
SstI	GAGCTC	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	3 cut(s)	173, 247, 256
TaiI	ACGT	1 cut(s)	106
TasI	AATT	3 cut(s)	134, 230, 538
TatI	WGTACW	4 cut(s)	46, 127, 168, 586
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	3 cut(s)	353, 416, 614
Tru9I	TTAA	3 cut(s)	353, 416, 614
TscAI	CASTG	1 cut(s)	369
TseI	GCWGC	2 cut(s)	629, 637
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	369
Vha464I	CTTAAG	1 cut(s)	415
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	3 cut(s)	266, 431, 450
XspI	CTAG	2 cut(s)	501, 658
ZrmI	AGTACT	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.