Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004408

Physical Location & Seq

Genomic Coordinates Reverse (-)

1178644 .. 1180060

Gene Structure 1417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCAGAAATTGTAAATTTGTCATCATCTTTGAGATCTTTAAACCCAAAGATCTCACCTTTGGTTCCTCCATATCGCCAAACCTCGAGCTCTTTCTCTCGACCGAGAAACTTCAAATATCATTCTTTTACCGATAAAATCTGTTTGGCAGCGGAGAGAATCCGAGCAGTCGATATCCAGAAGCAGGACGGTGGTTTGCAAGAGCTCGATGACTCGCCGGTGTCTGTTGAGCTCGGACCTATCTGTGGTGAGAGCCACTTCGATCAAGTGATGGAGGATGCTCAGAAGCTCGGTGAATCAGTTGTTATTGTCTGGATGGCTGCTTGGTGCAGGAAATGTATTTACTTGAAACCAAAACTCGAAAAGCTCGCTGCTGAATTCTATCCAAGACTGCGGTTTTATCATGTTGATGTCAACGCTGTGCCATATAGACTTGTTTCCCGTGCAGGAGTTACGAAAATGCCGACGATTCAGCTATGGAGAGATGGCCAGAAACAAGCTGAAGTTATTGGCGGCCACAAAGCGCATTTCGTGGTTAACGAAGTCAGGGAAATGATAGAGAACGATTCAATCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

192

Amino Acids

21.84

Weight (kDa)

8.32

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	85 - 180	7.9e-15	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04260
fragaria_vesca	FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880
malus_domestica	MD01G1104800.v1.1
prunus_persica	Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1
pyrus_communis	pycom01g13140
rosa_chinensis	RchiOBHm_Chr1g0362831 RchiOBHm_Chr5g0036621 RchiOBHm_Chr7g0239631
rosa_laevigata	RLG00000027619
rosa_multiflora	Rmu_sc0005055.1_g000016 Rmu_sc0006739.1_g000005 Rmu_sc0035177.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293730 Rroxscaffold_5G00347900
rosa_rugosa	Rorug01G0301700 Rorug01G0301800 Rorug06G0050200
rosa_samantha	Rh1AG310600 Rh1BG029700 Rh1BG273700 Rh1CG290900 Rh1DG304500 Rh2CG160200 Rh5CG416200
rosa_wichuraiana	Rw1G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	152, 394, 513
AcoI	YGGCCR	2 cut(s)	487, 514
AcsI	RAATTY	2 cut(s)	16, 377
AcuI	CTGAAG	1 cut(s)	522
AfiI	CCNNNNNNNGG	2 cut(s)	184, 245
AgsI	TTSAA	3 cut(s)	115, 349, 570
AluBI	AGCT	7 cut(s)	90, 205, 232, 289, 367, 475, 500
AluI	AGCT	7 cut(s)	90, 205, 232, 289, 367, 475, 500
Alw21I	GWGCWC	3 cut(s)	92, 207, 234
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	2 cut(s)	487, 514
ApeKI	GCWGC	3 cut(s)	149, 320, 371
ApoI	RAATTY	2 cut(s)	16, 377
AspLEI	GCGC	1 cut(s)	526
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	3 cut(s)	48, 260, 305
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	489
BanII	GRGCYC	3 cut(s)	92, 207, 234
Bbv12I	GWGCWC	3 cut(s)	92, 207, 234
BbvI	GCAGC	3 cut(s)	161, 307, 358
BccI	CCATC	3 cut(s)	265, 310, 479
BglII	AGATCT	2 cut(s)	35, 51
BisI	GCNGC	4 cut(s)	150, 321, 372, 514
BlsI	GCNGC	4 cut(s)	151, 322, 373, 515
Bme18I	GGWCC	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	66
BmsI	GCATC	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 245
Bse118I	RCCGGY	1 cut(s)	217
BseGI	GGATG	2 cut(s)	283, 321
BseLI	CCNNNNNNNGG	2 cut(s)	184, 245
BseMII	CTCAG	1 cut(s)	296
BseXI	GCAGC	3 cut(s)	161, 307, 358
BsgI	GTGCAG	2 cut(s)	349, 465
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	489, 516
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	3 cut(s)	92, 207, 234
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	184, 245
BsnI	GGCC	2 cut(s)	489, 516
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	3 cut(s)	92, 207, 234
Bsp143I	GATC	3 cut(s)	35, 51, 262
BspACI	CCGC	3 cut(s)	152, 394, 513
BspANI	GGCC	2 cut(s)	489, 516
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	217
BssAI	RCCGGY	1 cut(s)	217
BssMI	GATC	3 cut(s)	35, 51, 262
Bst4CI	ACNGT	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	2 cut(s)	283, 321
BstHHI	GCGC	1 cut(s)	526
BstKTI	GATC	3 cut(s)	38, 54, 265
BstMBI	GATC	3 cut(s)	35, 51, 262
BstMCI	CGRYCG	1 cut(s)	104
BstV1I	GCAGC	3 cut(s)	161, 307, 358
BstX2I	RGATCY	2 cut(s)	35, 51
BstYI	RGATCY	2 cut(s)	35, 51
BsuRI	GGCC	2 cut(s)	489, 516
BtsCI	GGATG	2 cut(s)	283, 321
Cac8I	GCNNGC	1 cut(s)	369
CfoI	GCGC	1 cut(s)	526
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	236
CviAII	CATG	1 cut(s)	404
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	3 cut(s)	37, 53, 264
DpnII	GATC	3 cut(s)	35, 51, 262
DraI	TTTAAA	1 cut(s)	42
EaeI	YGGCCR	2 cut(s)	487, 514
Ecl136II	GAGCTC	3 cut(s)	90, 205, 232
Eco24I	GRGCYC	3 cut(s)	92, 207, 234
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	236
Eco53kI	GAGCTC	3 cut(s)	90, 205, 232
Eco57I	CTGAAG	1 cut(s)	522
Eco88I	CYCGRG	1 cut(s)	85
EcoICRI	GAGCTC	3 cut(s)	90, 205, 232
EcoRI	GAATTC	1 cut(s)	377
EcoRV	GATATC	1 cut(s)	175
EcoT38I	GRGCYC	3 cut(s)	92, 207, 234
FaeI	CATG	1 cut(s)	407
FaiI	YATR	5 cut(s)	73, 405, 427, 429, 478
FatI	CATG	1 cut(s)	403
Fnu4HI	GCNGC	4 cut(s)	150, 321, 372, 514
FokI	GGATG	2 cut(s)	290, 328
FriOI	GRGCYC	3 cut(s)	92, 207, 234
Fsp4HI	GCNGC	4 cut(s)	150, 321, 372, 514
GlaI	GCGC	1 cut(s)	525
GluI	GCNGC	4 cut(s)	150, 321, 372, 514
HaeIII	GGCC	2 cut(s)	489, 516
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	526
Hin1II	CATG	1 cut(s)	407
Hin6I	GCGC	1 cut(s)	524
HinP1I	GCGC	1 cut(s)	524
HincII	GTYRAC	2 cut(s)	415, 538
HindII	GTYRAC	2 cut(s)	415, 538
HinfI	GANTC	5 cut(s)	159, 212, 296, 469, 566
HpaI	GTTAAC	1 cut(s)	538
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	3 cut(s)	48, 260, 305
Hpy166II	GTNNAC	2 cut(s)	415, 538
Hpy188I	TCNGA	4 cut(s)	7, 164, 236, 285
Hpy188III	TCNNGA	3 cut(s)	99, 178, 313
Hpy8I	GTNNAC	2 cut(s)	415, 538
Hpy99I	CGWCG	1 cut(s)	469
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	3 cut(s)	199, 330, 446
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	407
HspAI	GCGC	1 cut(s)	524
KspAI	GTTAAC	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	35, 51, 262
LpnPI	CCDG	8 cut(s)	170, 191, 231, 298, 316, 432, 503, 532
Lsp1109I	GCAGC	3 cut(s)	161, 307, 358
LweI	GCATC	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	3 cut(s)	37, 53, 264
MboI	GATC	3 cut(s)	35, 51, 262
MflI	RGATCY	2 cut(s)	35, 51
MhlI	GDGCHC	3 cut(s)	92, 207, 234
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	3 cut(s)	9, 16, 377
MluNI	TGGCCA	1 cut(s)	489
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	3 cut(s)	78, 94, 268
Mox20I	TGGCCA	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	2 cut(s)	41, 537
MslI	CAYNNNNRTG	1 cut(s)	408
Msp20I	TGGCCA	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	1 cut(s)	218
NdeII	GATC	3 cut(s)	35, 51, 262
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	1 cut(s)	66
PaeR7I	CTCGAG	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	2 cut(s)	461, 537
PfeI	GAWTC	4 cut(s)	159, 296, 469, 566
PkrI	GCNGC	4 cut(s)	151, 322, 373, 515
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Psp124BI	GAGCTC	3 cut(s)	92, 207, 234
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	236
PspXI	VCTCGAGB	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	35, 51
RseI	CAYNNNNRTG	1 cut(s)	408
SacI	GAGCTC	3 cut(s)	92, 207, 234
SaqAI	TTAA	2 cut(s)	41, 537
SatI	GCNGC	4 cut(s)	150, 321, 372, 514
Sau3AI	GATC	3 cut(s)	35, 51, 262
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	3 cut(s)	92, 207, 234
SfaNI	GCATC	1 cut(s)	268
Sfr274I	CTCGAG	1 cut(s)	85
SgrAI	CRCCGGYG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	236
SlaI	CTCGAG	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	3 cut(s)	9, 16, 377
SsiI	CCGC	3 cut(s)	152, 394, 513
SstI	GAGCTC	3 cut(s)	92, 207, 234
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	6 cut(s)	86, 100, 171, 207, 261, 360
TaqII	GACCGA	1 cut(s)	118
TasI	AATT	3 cut(s)	9, 16, 377
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	4 cut(s)	159, 296, 469, 566
Tru1I	TTAA	2 cut(s)	41, 537
Tru9I	TTAA	2 cut(s)	41, 537
TseI	GCWGC	3 cut(s)	149, 320, 371
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	2 cut(s)	16, 377
XhoI	CTCGAG	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.