Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004408

Physical Location & Seq

Genomic Coordinates Forward (+)

54444953 .. 54447934

Gene Structure 2982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG310600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTCCGTAGTTCCGACGAATCCTACTCTCAGGTACCTGAGAACCAGGACCGCACGTGACCCGTCACGTGACTCCCCAACCTTCACTTGTTCGCTCAACAAAGTTTCAATCTTGGGATTCAGGGCGGCAAATTCGCTGGTGTTGTACCGTAAATTCGATGAAATCCGGGGGCCGATGATAAGGGCTTTGAGCCCAGAAGGGTCGTTGCGAGAGCTCGATGATTCGCCGGTCTCCGTGGAGCTCGCGCCCATTTGCAGCGAGGCCCAGTTCGATCGGGTCGTCGCCGAGGCCCAACAGCTCCTGCAATCGTTCGTCGTCGTTTGGATGGCAAGCTGGTGCAGGAAGTGCATATATTTGAAACCAAAGTTGGAGAAGTTGGCAGCTGAGTACTATCCAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

133

Amino Acids

15.14

Weight (kDa)

9.21

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04260
fragaria_vesca	FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880
malus_domestica	MD01G1104800.v1.1
prunus_persica	Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1
pyrus_communis	pycom01g13140
rosa_chinensis	RchiOBHm_Chr1g0362831 RchiOBHm_Chr5g0036621 RchiOBHm_Chr7g0239631
rosa_laevigata	RLG00000027619
rosa_multiflora	Rmu_sc0005055.1_g000016 Rmu_sc0006739.1_g000005 Rmu_sc0035177.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293730 Rroxscaffold_5G00347900
rosa_rugosa	Rorug01G0301700 Rorug01G0301800 Rorug06G0050200
rosa_samantha	Rh1AG310600 Rh1BG029700 Rh1BG273700 Rh1CG290900 Rh1DG304500 Rh2CG160200 Rh5CG416200
rosa_wichuraiana	Rw1G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	33
AccII	CGCG	1 cut(s)	245
AciI	CCGC	2 cut(s)	51, 125
AcsI	RAATTY	2 cut(s)	130, 152
AcvI	CACGTG	2 cut(s)	56, 68
AfaI	GTAC	3 cut(s)	35, 146, 389
AgsI	TTSAA	2 cut(s)	108, 358
AjnI	CCWGG	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
AluBI	AGCT	5 cut(s)	214, 241, 298, 333, 383
AluI	AGCT	5 cut(s)	214, 241, 298, 333, 383
Alw21I	GWGCWC	2 cut(s)	216, 243
Alw26I	GTCTC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	301
AoxI	GGCC	3 cut(s)	170, 261, 288
ApeKI	GCWGC	2 cut(s)	255, 380
ApoI	RAATTY	2 cut(s)	130, 152
Asp718I	GGTACC	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	4 cut(s)	48, 170, 262, 289
AsuC2I	CCSGG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	33
BanII	GRGCYC	3 cut(s)	194, 216, 243
BbrPI	CACGTG	2 cut(s)	56, 68
Bbv12I	GWGCWC	2 cut(s)	216, 243
BbvI	GCAGC	2 cut(s)	267, 392
BccI	CCATC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	235
BisI	GCNGC	3 cut(s)	126, 256, 381
BlsI	GCNGC	3 cut(s)	127, 257, 382
BmcAI	AGTACT	1 cut(s)	389
Bme1390I	CCNGG	2 cut(s)	46, 167
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	4 cut(s)	48, 170, 262, 289
BmiI	GGNNCC	2 cut(s)	35, 171
BmrFI	CCNGG	2 cut(s)	46, 167
BmrI	ACTGGG	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	167
BsaAI	YACGTR	2 cut(s)	56, 68
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	4 cut(s)	166, 234, 285, 395
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	4 cut(s)	166, 234, 285, 395
BseGI	GGATG	1 cut(s)	330
BseMII	CTCAG	3 cut(s)	29, 43, 375
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	267, 392
BsgI	GTGCAG	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	245
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	3 cut(s)	172, 263, 290
BshNI	GGYRCC	1 cut(s)	33
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	216, 243
BsiSI	CCGG	2 cut(s)	166, 227
BsmAI	GTCTC	1 cut(s)	235
BsnI	GGCC	3 cut(s)	172, 263, 290
Bso31I	GGTCTC	1 cut(s)	235
Bsp1286I	GDGCHC	3 cut(s)	194, 216, 243
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	2 cut(s)	51, 125
BspANI	GGCC	3 cut(s)	172, 263, 290
BspCNI	CTCAG	3 cut(s)	30, 42, 376
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	2 cut(s)	35, 171
BspT107I	GGYRCC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	4 cut(s)	166, 234, 285, 395
BssMI	GATC	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstBAI	YACGTR	2 cut(s)	56, 68
BstC8I	GCNNGC	2 cut(s)	243, 331
BstDEI	CTNAG	3 cut(s)	29, 38, 384
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	271
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	2 cut(s)	44, 165
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	267, 392
BsuRI	GGCC	3 cut(s)	172, 263, 290
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	243, 331
CaiI	CAGNNNCTG	1 cut(s)	301
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	4 cut(s)	48, 170, 262, 289
Csp6I	GTAC	3 cut(s)	34, 145, 388
CviQI	GTAC	3 cut(s)	34, 145, 388
DdeI	CTNAG	3 cut(s)	29, 38, 384
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Ecl136II	GAGCTC	2 cut(s)	214, 241
Eco130I	CCWWGG	1 cut(s)	395
Eco24I	GRGCYC	3 cut(s)	194, 216, 243
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	48
Eco53kI	GAGCTC	2 cut(s)	214, 241
Eco72I	CACGTG	2 cut(s)	56, 68
EcoICRI	GAGCTC	2 cut(s)	214, 241
EcoRII	CCWGG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	395
EcoT38I	GRGCYC	3 cut(s)	194, 216, 243
ErhI	CCWWGG	1 cut(s)	395
FaiI	YATR	2 cut(s)	350, 352
Fnu4HI	GCNGC	3 cut(s)	126, 256, 381
FokI	GGATG	1 cut(s)	337
FriOI	GRGCYC	3 cut(s)	194, 216, 243
Fsp4HI	GCNGC	3 cut(s)	126, 256, 381
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	3 cut(s)	126, 256, 381
HaeIII	GGCC	3 cut(s)	172, 263, 290
HapII	CCGG	2 cut(s)	166, 227
HhaI	GCGC	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	4 cut(s)	19, 71, 117, 221
HpaII	CCGG	2 cut(s)	166, 227
Hpy188I	TCNGA	1 cut(s)	15
Hpy99I	CGWCG	4 cut(s)	19, 284, 317, 320
HpyAV	CCTTC	2 cut(s)	91, 191
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	2 cut(s)	55, 67
HpyCH4V	TGCA	4 cut(s)	255, 304, 339, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	3 cut(s)	29, 38, 384
HpySE526I	ACGT	2 cut(s)	55, 67
HspAI	GCGC	1 cut(s)	245
KpnI	GGTACC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	2 cut(s)	238, 303
Lsp1109I	GCAGC	2 cut(s)	267, 392
MaeII	ACGT	2 cut(s)	55, 67
MaeIII	GTNAC	3 cut(s)	56, 63, 68
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MhlI	GDGCHC	3 cut(s)	194, 216, 243
MluCI	AATT	2 cut(s)	130, 152
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	38, 348
MnlI	CCTC	2 cut(s)	253, 280
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	2 cut(s)	166, 227
MspR9I	CCNGG	2 cut(s)	46, 167
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	345
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	271
NlaIV	GGNNCC	2 cut(s)	35, 171
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	3 cut(s)	56, 63, 68
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	19, 117, 221
PkrI	GCNGC	3 cut(s)	127, 257, 382
Ple19I	CGATCG	1 cut(s)	274
PleI	GAGTC	1 cut(s)	65
PmaCI	CACGTG	2 cut(s)	56, 68
PmlI	CACGTG	2 cut(s)	56, 68
PpsI	GAGTC	1 cut(s)	65
Ppu21I	YACGTR	2 cut(s)	56, 68
Psp124BI	GAGCTC	2 cut(s)	216, 243
Psp6I	CCWGG	1 cut(s)	44
PspCI	CACGTG	2 cut(s)	56, 68
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	35, 171
PspPI	GGNCC	4 cut(s)	48, 170, 262, 289
PstNI	CAGNNNCTG	1 cut(s)	301
PvuI	CGATCG	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	3 cut(s)	35, 146, 389
RsaNI	GTAC	3 cut(s)	34, 145, 388
SacI	GAGCTC	2 cut(s)	216, 243
SatI	GCNGC	3 cut(s)	126, 256, 381
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	4 cut(s)	48, 170, 262, 289
ScaI	AGTACT	1 cut(s)	389
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	46, 167
SduI	GDGCHC	3 cut(s)	194, 216, 243
SinI	GGWCC	1 cut(s)	48
Sse9I	AATT	2 cut(s)	130, 152
SsiI	CCGC	2 cut(s)	51, 125
SstI	GAGCTC	2 cut(s)	216, 243
StyD4I	CCNGG	2 cut(s)	44, 165
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	2 cut(s)	58, 70
TaqI	TCGA	3 cut(s)	156, 216, 270
TasI	AATT	2 cut(s)	130, 152
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	3 cut(s)	19, 117, 221
TseFI	GTSAC	3 cut(s)	56, 63, 68
TseI	GCWGC	2 cut(s)	255, 380
Tsp45I	GTSAC	3 cut(s)	56, 63, 68
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	48
XapI	RAATTY	2 cut(s)	130, 152
ZrmI	AGTACT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.