Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004408

Physical Location & Seq

Genomic Coordinates Reverse (-)

13925703 .. 13928591

Gene Structure 2889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00293730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTCCGTAGTTCCGACGCATCCTACTCTCAGGTACCTGAGAACCAGGACAGCACGTGACCCGTCACGTGACTCCCCAACCTTTACTTCTTCGCTCAAAGTTTCAATCTTGGGATTCAGGGCGCCAAATTCGCTGGTGTTGTCCCGTAAATTCGATGAAATCCGGGGGCCGATGATAAGGGCTTTGAGCCCAGAAGGGTCGTTGCGAGAGCTCGATGACTCGCCGGTCTCGGTGGAGCTCGCGCCCATTTGCAGCGAGGCCCAGTTCGATCGGGTCGTCGCCGAGGCCCAACAGCTCCAGCAATCGTTCGTCGTCGTTTGGATGGCAAGCTGGTGCAGGAAGTGCATATATTTGAAACCGAAGTTGGAGAAGTTGGCAGCCGAGTACTATCCAAGATTGCTGTTCTATAGTGTTGATGTCAATTCAGTTCCACACAAGGTTGTTGCTCGCGCTGAAGTCACTAAAATGCCTACTATACAGCTCTGGAAAGATGGCAAGAAACAAGCTGAGGTAATCGGTGGTCATGGCAAAGCATATTTAGTGATTAATGAAGTTCGTGCAATGATTGAAACAGACAATAGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

195

Amino Acids

21.98

Weight (kDa)

9.3

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	85 - 180	2.6e-16	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04260
fragaria_vesca	FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880
malus_domestica	MD01G1104800.v1.1
prunus_persica	Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1
pyrus_communis	pycom01g13140
rosa_chinensis	RchiOBHm_Chr1g0362831 RchiOBHm_Chr5g0036621 RchiOBHm_Chr7g0239631
rosa_laevigata	RLG00000027619
rosa_multiflora	Rmu_sc0005055.1_g000016 Rmu_sc0006739.1_g000005 Rmu_sc0035177.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293730 Rroxscaffold_5G00347900
rosa_rugosa	Rorug01G0301700 Rorug01G0301800 Rorug06G0050200
rosa_samantha	Rh1AG310600 Rh1BG029700 Rh1BG273700 Rh1CG290900 Rh1DG304500 Rh2CG160200 Rh5CG416200
rosa_wichuraiana	Rw1G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
Acc65I	GGTACC	1 cut(s)	33
AccB1I	GGYRCC	2 cut(s)	33, 121
AccII	CGCG	2 cut(s)	242, 450
AcsI	RAATTY	2 cut(s)	127, 149
AcuI	CTGAAG	1 cut(s)	474
AcvI	CACGTG	2 cut(s)	56, 68
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	2 cut(s)	35, 386
AgsI	TTSAA	3 cut(s)	105, 355, 569
AjnI	CCWGG	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	4 cut(s)	70, 102, 347, 379
AluBI	AGCT	6 cut(s)	211, 238, 295, 330, 481, 506
AluI	AGCT	6 cut(s)	211, 238, 295, 330, 481, 506
Alw21I	GWGCWC	2 cut(s)	213, 240
Alw26I	GTCTC	1 cut(s)	232
AoxI	GGCC	3 cut(s)	167, 258, 285
ApeKI	GCWGC	2 cut(s)	252, 377
ApoI	RAATTY	2 cut(s)	127, 149
AseI	ATTAAT	1 cut(s)	546
Asp718I	GGTACC	1 cut(s)	33
AspLEI	GCGC	3 cut(s)	124, 244, 452
AspS9I	GGNCC	3 cut(s)	167, 259, 286
AsuC2I	CCSGG	1 cut(s)	164
BanI	GGYRCC	2 cut(s)	33, 121
BanII	GRGCYC	3 cut(s)	191, 213, 240
BbrPI	CACGTG	2 cut(s)	56, 68
Bbv12I	GWGCWC	2 cut(s)	213, 240
BbvCI	CCTCAGC	1 cut(s)	507
BbvI	GCAGC	2 cut(s)	264, 389
BccI	CCATC	2 cut(s)	316, 485
BciT130I	CCWGG	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	232
BfmI	CTRYAG	1 cut(s)	406
BfoI	RGCGCY	1 cut(s)	125
BisI	GCNGC	2 cut(s)	253, 378
BlsI	GCNGC	2 cut(s)	254, 379
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	2 cut(s)	46, 164
BmgT120I	GGNCC	3 cut(s)	167, 259, 286
BmiI	GGNNCC	3 cut(s)	35, 123, 168
BmrFI	CCNGG	2 cut(s)	46, 164
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	281
Bpu10I	CCTNAGC	1 cut(s)	507
BpuMI	CCSGG	1 cut(s)	164
BsaAI	YACGTR	2 cut(s)	56, 68
BsaHI	GRCGYC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	163, 282
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	2 cut(s)	163, 282
BseGI	GGATG	2 cut(s)	19, 327
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	3 cut(s)	29, 43, 498
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	264, 389
BsgI	GTGCAG	1 cut(s)	355
Bsh1236I	CGCG	2 cut(s)	242, 450
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	3 cut(s)	169, 260, 287
BshNI	GGYRCC	2 cut(s)	33, 121
BsiEI	CGRYCG	1 cut(s)	271
BsiHKAI	GWGCWC	2 cut(s)	213, 240
BsiSI	CCGG	2 cut(s)	163, 224
BslFI	GGGAC	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	3 cut(s)	169, 260, 287
Bso31I	GGTCTC	1 cut(s)	232
Bsp1286I	GDGCHC	3 cut(s)	191, 213, 240
Bsp143I	GATC	1 cut(s)	268
BspANI	GGCC	3 cut(s)	169, 260, 287
BspCNI	CTCAG	3 cut(s)	30, 42, 499
BspFNI	CGCG	2 cut(s)	242, 450
BspLI	GGNNCC	3 cut(s)	35, 123, 168
BspT107I	GGYRCC	2 cut(s)	33, 121
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	567
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	163, 282
BssMI	GATC	1 cut(s)	268
BssNI	GRCGYC	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	122
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstBAI	YACGTR	2 cut(s)	56, 68
BstC8I	GCNNGC	3 cut(s)	240, 328, 448
BstDEI	CTNAG	3 cut(s)	29, 38, 507
BstF5I	GGATG	2 cut(s)	19, 327
BstFNI	CGCG	2 cut(s)	242, 450
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	3 cut(s)	124, 244, 452
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	268
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 342
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	2 cut(s)	44, 162
BstSFI	CTRYAG	1 cut(s)	406
BstUI	CGCG	2 cut(s)	242, 450
BstV1I	GCAGC	2 cut(s)	264, 389
BsuRI	GGCC	3 cut(s)	169, 260, 287
BtsCI	GGATG	2 cut(s)	19, 327
Cac8I	GCNNGC	3 cut(s)	240, 328, 448
CfoI	GCGC	3 cut(s)	124, 244, 452
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	3 cut(s)	167, 259, 286
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	34, 385
CviAII	CATG	1 cut(s)	524
CviQI	GTAC	2 cut(s)	34, 385
DdeI	CTNAG	3 cut(s)	29, 38, 507
DinI	GGCGCC	1 cut(s)	123
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Ecl136II	GAGCTC	2 cut(s)	211, 238
Eco24I	GRGCYC	3 cut(s)	191, 213, 240
Eco31I	GGTCTC	1 cut(s)	232
Eco53kI	GAGCTC	2 cut(s)	211, 238
Eco57I	CTGAAG	1 cut(s)	474
Eco72I	CACGTG	2 cut(s)	56, 68
EcoICRI	GAGCTC	2 cut(s)	211, 238
EcoRII	CCWGG	1 cut(s)	44
EcoT38I	GRGCYC	3 cut(s)	191, 213, 240
EgeI	GGCGCC	1 cut(s)	123
EheI	GGCGCC	1 cut(s)	123
FaeI	CATG	1 cut(s)	527
FaiI	YATR	7 cut(s)	347, 349, 408, 476, 525, 535, 586
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	1 cut(s)	523
Fnu4HI	GCNGC	2 cut(s)	253, 378
FokI	GGATG	2 cut(s)	6, 334
FriOI	GRGCYC	3 cut(s)	191, 213, 240
Fsp4HI	GCNGC	2 cut(s)	253, 378
GlaI	GCGC	3 cut(s)	123, 243, 451
GluI	GCNGC	2 cut(s)	253, 378
GsuI	CTGGAG	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	169, 260, 287
HapII	CCGG	2 cut(s)	163, 224
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	3 cut(s)	124, 244, 452
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	527
Hin6I	GCGC	3 cut(s)	122, 242, 450
HinP1I	GCGC	3 cut(s)	122, 242, 450
HinfI	GANTC	3 cut(s)	71, 114, 218
HpaII	CCGG	2 cut(s)	163, 224
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	484
Hpy99I	CGWCG	4 cut(s)	19, 281, 314, 317
HpyAV	CCTTC	1 cut(s)	188
HpyCH4IV	ACGT	2 cut(s)	55, 67
HpyCH4V	TGCA	4 cut(s)	252, 336, 345, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 342
HpyF3I	CTNAG	3 cut(s)	29, 38, 507
HpySE526I	ACGT	2 cut(s)	55, 67
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	527
HspAI	GCGC	3 cut(s)	122, 242, 450
KasI	GGCGCC	1 cut(s)	121
KpnI	GGTACC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	2 cut(s)	235, 300
Lsp1109I	GCAGC	2 cut(s)	264, 389
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	2 cut(s)	55, 67
MaeIII	GTNAC	4 cut(s)	56, 63, 68, 457
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	1 cut(s)	81
MhlI	GDGCHC	3 cut(s)	191, 213, 240
MluCI	AATT	3 cut(s)	127, 149, 421
Mly113I	GGCGCC	1 cut(s)	122
MlyI	GAGTC	2 cut(s)	65, 212
MmeI	TCCRAC	2 cut(s)	38, 345
MnlI	CCTC	3 cut(s)	250, 277, 502
MseI	TTAA	1 cut(s)	546
MslI	CAYNNNNRTG	1 cut(s)	464
MspI	CCGG	2 cut(s)	163, 224
MspR9I	CCNGG	2 cut(s)	46, 164
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	2 cut(s)	242, 450
MwoI	GCNNNNNNNGC	2 cut(s)	130, 342
NarI	GGCGCC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	527
NlaIV	GGNNCC	3 cut(s)	35, 123, 168
NmeAIII	GCCGAG	2 cut(s)	307, 406
NmuCI	GTSAC	4 cut(s)	56, 63, 68, 457
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	254, 379
Ple19I	CGATCG	1 cut(s)	271
PleI	GAGTC	2 cut(s)	65, 212
PluTI	GGCGCC	1 cut(s)	125
PmaCI	CACGTG	2 cut(s)	56, 68
PmlI	CACGTG	2 cut(s)	56, 68
PpsI	GAGTC	2 cut(s)	65, 212
Ppu21I	YACGTR	2 cut(s)	56, 68
PshBI	ATTAAT	1 cut(s)	546
Psp124BI	GAGCTC	2 cut(s)	213, 240
Psp6I	CCWGG	1 cut(s)	44
PspCI	CACGTG	2 cut(s)	56, 68
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	3 cut(s)	35, 123, 168
PspPI	GGNCC	3 cut(s)	167, 259, 286
PvuI	CGATCG	1 cut(s)	271
RsaI	GTAC	2 cut(s)	35, 386
RsaNI	GTAC	2 cut(s)	34, 385
RseI	CAYNNNNRTG	1 cut(s)	464
SacI	GAGCTC	2 cut(s)	213, 240
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	2 cut(s)	253, 378
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	3 cut(s)	167, 259, 286
ScaI	AGTACT	1 cut(s)	386
SchI	GAGTC	2 cut(s)	65, 212
ScrFI	CCNGG	2 cut(s)	46, 164
SduI	GDGCHC	3 cut(s)	191, 213, 240
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	406
SfoI	GGCGCC	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	464
Sse9I	AATT	3 cut(s)	127, 149, 421
SspDI	GGCGCC	1 cut(s)	121
SstI	GAGCTC	2 cut(s)	213, 240
StyD4I	CCNGG	2 cut(s)	44, 162
TaiI	ACGT	2 cut(s)	58, 70
TaqI	TCGA	3 cut(s)	153, 213, 267
TasI	AATT	3 cut(s)	127, 149, 421
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TseFI	GTSAC	4 cut(s)	56, 63, 68, 457
TseI	GCWGC	2 cut(s)	252, 377
Tsp45I	GTSAC	4 cut(s)	56, 63, 68, 457
TspDTI	ATGAA	2 cut(s)	171, 564
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	2 cut(s)	127, 149
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.