Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004408

Physical Location & Seq

Genomic Coordinates Forward (+)

21797787 .. 21800545

Gene Structure 2759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1104800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCCGTAGTACCGACGACGCGCCCTACTCTCCGGCTCCCGAGAGCCAGTGCCTCACGTGACCGGCCAACAGCTTCGCCCAAAGTTTCAATTTTGGGCTTCAGGCTCAGAGCGCCAAGCTCTTCAAATCCCCCGGTATTCTCCCGTAAATTTGATGAAATCCGGGGGCGGATTACTGTGCTGAGTGCTTTGAGCCAGGAAGGGTCGCTGCAGGAGGTGGATGATTCACCGGTCACGGTGGCGCTCGCGCCCATTTCCAGCGAGACCCAGTTCGATCGGGTGGTTGCCCAGGCCCAGCAGCTCGACGAATCGTTTGTTGTCGTTTGGGTGGCAACCTGGTGCAGAAAATGTATATATTTGAAGCCAAAATTGGAGAAGCTGGCAGCTGAGTACTATCCAAGATTGAAGTTCTATTCTGTTGATGTCAATTCAGTTCCACACAAACTCGTTAAACGTGCTGATGTCACTAAGATGCCAACTATACAGTTGTGGAAAGACGGCAAGAAGCAAGCTGAGGTTATCGGTGGTCACAAAGCACATTTAGTCATTAATGAAGTTCGGGAAATGATTGAAAACGAGGATAGCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

197

Amino Acids

21.99

Weight (kDa)

9.51

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	87 - 182	3.7e-17	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04260
fragaria_vesca	FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880
malus_domestica	MD01G1104800.v1.1
prunus_persica	Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1
pyrus_communis	pycom01g13140
rosa_chinensis	RchiOBHm_Chr1g0362831 RchiOBHm_Chr5g0036621 RchiOBHm_Chr7g0239631
rosa_laevigata	RLG00000027619
rosa_multiflora	Rmu_sc0005055.1_g000016 Rmu_sc0006739.1_g000005 Rmu_sc0035177.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293730 Rroxscaffold_5G00347900
rosa_rugosa	Rorug01G0301700 Rorug01G0301800 Rorug06G0050200
rosa_samantha	Rh1AG310600 Rh1BG029700 Rh1BG273700 Rh1CG290900 Rh1DG304500 Rh2CG160200 Rh5CG416200
rosa_wichuraiana	Rw1G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	22, 248
AciI	CCGC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	85
AcvI	CACGTG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	12, 392
AgeI	ACCGGT	1 cut(s)	229
AgsI	TTSAA	5 cut(s)	90, 126, 361, 406, 572
AjnI	CCWGG	3 cut(s)	195, 288, 335
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AluBI	AGCT	6 cut(s)	74, 120, 301, 379, 386, 512
AluI	AGCT	6 cut(s)	74, 120, 301, 379, 386, 512
Alw26I	GTCTC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	2 cut(s)	65, 291
ApeKI	GCWGC	3 cut(s)	208, 298, 383
ApoI	RAATTY	1 cut(s)	149
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AseI	ATTAAT	1 cut(s)	549
AsiGI	ACCGGT	1 cut(s)	229
AspLEI	GCGC	4 cut(s)	24, 115, 244, 250
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	2 cut(s)	134, 164
AsuHPI	GGTGA	1 cut(s)	219
AvaI	CYCGRG	1 cut(s)	40
BbrPI	CACGTG	1 cut(s)	59
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	3 cut(s)	195, 310, 395
BceAI	ACGGC	1 cut(s)	514
BciT130I	CCWGG	3 cut(s)	197, 290, 337
BcnI	CCSGG	2 cut(s)	134, 164
BcoDI	GTCTC	1 cut(s)	257
BfmI	CTRYAG	1 cut(s)	209
BfoI	RGCGCY	2 cut(s)	116, 245
BisI	GCNGC	3 cut(s)	209, 299, 384
BlsI	GCNGC	3 cut(s)	210, 300, 385
BmcAI	AGTACT	1 cut(s)	392
Bme1390I	CCNGG	5 cut(s)	134, 164, 197, 290, 337
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	5 cut(s)	134, 164, 197, 290, 337
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	462
BmuI	ACTGGG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	513
BpuMI	CCSGG	2 cut(s)	134, 164
BsaAI	YACGTR	2 cut(s)	59, 588
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	3 cut(s)	132, 163, 288
BsaWI	WCCGGW	1 cut(s)	229
Bse118I	RCCGGY	2 cut(s)	63, 229
Bse1I	ACTGG	2 cut(s)	48, 268
BseBI	CCWGG	3 cut(s)	197, 290, 337
BseDI	CCNNGG	3 cut(s)	132, 163, 288
BseGI	GGATG	1 cut(s)	226
BseMII	CTCAG	4 cut(s)	121, 173, 378, 504
BseNI	ACTGG	2 cut(s)	48, 268
BseXI	GCAGC	3 cut(s)	195, 310, 395
BseYI	CCCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	361
Bsh1236I	CGCG	2 cut(s)	22, 248
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	67, 293
BshTI	ACCGGT	1 cut(s)	229
BsiEI	CGRYCG	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	5 cut(s)	34, 64, 134, 163, 230
BsmAI	GTCTC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	67, 293
Bso31I	GGTCTC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	2 cut(s)	67, 293
BspCNI	CTCAG	4 cut(s)	120, 174, 379, 505
BspFNI	CGCG	2 cut(s)	22, 248
BspLI	GGNNCC	1 cut(s)	38
BspMAI	CTGCAG	1 cut(s)	213
BspQI	GCTCTTC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	257
BsrFI	RCCGGY	2 cut(s)	63, 229
BsrI	ACTGG	2 cut(s)	48, 268
BssAI	RCCGGY	2 cut(s)	63, 229
BssECI	CCNNGG	3 cut(s)	132, 163, 288
BssMI	GATC	1 cut(s)	274
Bst2UI	CCWGG	3 cut(s)	197, 290, 337
Bst4CI	ACNGT	3 cut(s)	178, 238, 486
Bst6I	CTCTTC	1 cut(s)	127
BstBAI	YACGTR	2 cut(s)	59, 588
BstC8I	GCNNGC	3 cut(s)	246, 381, 510
BstDEI	CTNAG	5 cut(s)	107, 182, 387, 468, 513
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	2 cut(s)	22, 248
BstH2I	RGCGCY	2 cut(s)	116, 245
BstHHI	GCGC	4 cut(s)	24, 115, 244, 250
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	1 cut(s)	274
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	3 cut(s)	197, 290, 337
BstSCI	CCNGG	5 cut(s)	132, 162, 195, 288, 335
BstSFI	CTRYAG	1 cut(s)	209
BstUI	CGCG	2 cut(s)	22, 248
BstV1I	GCAGC	3 cut(s)	195, 310, 395
BsuRI	GGCC	2 cut(s)	67, 293
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	246, 381, 510
CfoI	GCGC	4 cut(s)	24, 115, 244, 250
Cfr10I	RCCGGY	2 cut(s)	63, 229
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	11, 391
CspAI	ACCGGT	1 cut(s)	229
CviQI	GTAC	2 cut(s)	11, 391
DdeI	CTNAG	5 cut(s)	107, 182, 387, 468, 513
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
EciI	GGCGGA	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	85
Eco72I	CACGTG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	40
EcoRII	CCWGG	3 cut(s)	195, 288, 335
FaiI	YATR	3 cut(s)	353, 355, 482
Fnu4HI	GCNGC	3 cut(s)	209, 299, 384
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	3 cut(s)	209, 299, 384
GlaI	GCGC	4 cut(s)	23, 114, 243, 249
GluI	GCNGC	3 cut(s)	209, 299, 384
GsaI	CCCAGC	1 cut(s)	298
HaeII	RGCGCY	2 cut(s)	116, 245
HaeIII	GGCC	2 cut(s)	67, 293
HapII	CCGG	5 cut(s)	34, 64, 134, 163, 230
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	4 cut(s)	24, 115, 244, 250
Hin6I	GCGC	4 cut(s)	22, 113, 242, 248
HinP1I	GCGC	4 cut(s)	22, 113, 242, 248
HinfI	GANTC	2 cut(s)	224, 308
HpaII	CCGG	5 cut(s)	34, 64, 134, 163, 230
HphI	GGTGA	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	2 cut(s)	40, 560
Hpy99I	CGWCG	3 cut(s)	19, 22, 308
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	3 cut(s)	178, 238, 486
HpyCH4IV	ACGT	3 cut(s)	58, 454, 587
HpyCH4V	TGCA	2 cut(s)	211, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	5 cut(s)	107, 182, 387, 468, 513
HpySE526I	ACGT	3 cut(s)	58, 454, 587
HspAI	GCGC	4 cut(s)	22, 113, 242, 248
Kzo9I	GATC	1 cut(s)	274
LguI	GCTCTTC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	3 cut(s)	195, 310, 395
LweI	GCATC	1 cut(s)	462
MabI	ACCWGGT	1 cut(s)	335
MaeII	ACGT	3 cut(s)	58, 454, 587
MaeIII	GTNAC	4 cut(s)	59, 232, 463, 527
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	1 cut(s)	114
MluCI	AATT	4 cut(s)	90, 149, 368, 427
MnlI	CCTC	4 cut(s)	64, 208, 508, 571
MseI	TTAA	2 cut(s)	450, 549
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	5 cut(s)	34, 64, 134, 163, 230
MspR9I	CCNGG	5 cut(s)	134, 164, 197, 290, 337
MvaI	CCWGG	3 cut(s)	197, 290, 337
MvnI	CGCG	2 cut(s)	22, 248
MwoI	GCNNNNNNNGC	1 cut(s)	112
NciI	CCSGG	2 cut(s)	134, 164
NdeII	GATC	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	4 cut(s)	59, 232, 463, 527
PciSI	GCTCTTC	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	224, 308
PinAI	ACCGGT	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	210, 300, 385
Ple19I	CGATCG	1 cut(s)	277
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
Ppu21I	YACGTR	2 cut(s)	59, 588
PshBI	ATTAAT	1 cut(s)	549
Psp6I	CCWGG	3 cut(s)	195, 288, 335
PspCI	CACGTG	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	294
PspGI	CCWGG	3 cut(s)	195, 288, 335
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	213
PvuI	CGATCG	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	2 cut(s)	12, 392
RsaNI	GTAC	2 cut(s)	11, 391
RseI	CAYNNNNRTG	1 cut(s)	470
SapI	GCTCTTC	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	450, 549
SatI	GCNGC	3 cut(s)	209, 299, 384
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	1 cut(s)	292
ScaI	AGTACT	1 cut(s)	392
ScrFI	CCNGG	5 cut(s)	134, 164, 197, 290, 337
SexAI	ACCWGGT	1 cut(s)	335
SfaNI	GCATC	1 cut(s)	462
SfcI	CTRYAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	470
Sse9I	AATT	4 cut(s)	90, 149, 368, 427
SsiI	CCGC	1 cut(s)	169
StyD4I	CCNGG	5 cut(s)	132, 162, 195, 288, 335
TaaI	ACNGT	3 cut(s)	178, 238, 486
TaiI	ACGT	3 cut(s)	61, 457, 590
TaqI	TCGA	2 cut(s)	273, 303
TasI	AATT	4 cut(s)	90, 149, 368, 427
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	2 cut(s)	224, 308
Tru1I	TTAA	2 cut(s)	450, 549
Tru9I	TTAA	2 cut(s)	450, 549
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	4 cut(s)	59, 232, 463, 527
TseI	GCWGC	3 cut(s)	208, 298, 383
Tsp45I	GTSAC	4 cut(s)	59, 232, 463, 527
TspDTI	ATGAA	2 cut(s)	171, 567
TspRI	CASTG	1 cut(s)	55
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	1 cut(s)	149
ZrmI	AGTACT	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.