Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004408

Physical Location & Seq

Genomic Coordinates Forward (+)

15708485 .. 15710941

Gene Structure 2457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g18880.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTCCGTGGCACAGACGTACCCTACTCTCCGGTACCTGAGAACCGCACGTGACCCGTCACGTGACTCCCCAACCCCTCCTTCTTCTTCTTCCCTTAAAGTTTCGATATTTGGATTCACGGCGCGAAACTTGGCGGTCACTTCGCGTAATTCCGATGAAATCTGGGCGCCGATAAGGGCGTTGAGCCCGGAAGGGTCGCTGCGGGAGCTCGATGACTCGCCGGTGTCTGTTGACCTCGTGCCGATTTGCAGCGAGGCCCAGTTCGACCGGGTCGTCGCCCAGGCCCAGCAGCTCCGGCAACCGTTCGTCGTCGTTTGGATAGCAAGCTGGTGCAGGAAATGCATATATTTGAAGCCGAAATTGGAGAAATTGGCAGCCGAGTACTATCCAAGATTGCTGTTCTACAGTGTTGATGTCAATTCAGTTCCATACAAGCTTGTTGCTTGCGCTGAAGTCACTAAGATGCCTACTATACAGCTTTGGAAAGATGGCAAGAAACAAGCTGAGGTGATTGGTGGTCATGGCAAAGCATTCTTAGTGATTAATGAAGTTCGCGCAATGATTGAAACTGACGATAGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

195

Amino Acids

21.72

Weight (kDa)

8.65

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04260
fragaria_vesca	FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880
malus_domestica	MD01G1104800.v1.1
prunus_persica	Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1
pyrus_communis	pycom01g13140
rosa_chinensis	RchiOBHm_Chr1g0362831 RchiOBHm_Chr5g0036621 RchiOBHm_Chr7g0239631
rosa_laevigata	RLG00000027619
rosa_multiflora	Rmu_sc0005055.1_g000016 Rmu_sc0006739.1_g000005 Rmu_sc0035177.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293730 Rroxscaffold_5G00347900
rosa_rugosa	Rorug01G0301700 Rorug01G0301800 Rorug06G0050200
rosa_samantha	Rh1AG310600 Rh1BG029700 Rh1BG273700 Rh1CG290900 Rh1DG304500 Rh2CG160200 Rh5CG416200
rosa_wichuraiana	Rw1G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
Acc65I	GGTACC	1 cut(s)	33
AccB1I	GGYRCC	2 cut(s)	33, 166
AccII	CGCG	3 cut(s)	124, 145, 555
AciI	CCGC	3 cut(s)	45, 134, 202
AcuI	CTGAAG	1 cut(s)	471
AcvI	CACGTG	2 cut(s)	50, 62
AcyI	GRCGYC	1 cut(s)	167
AfaI	GTAC	3 cut(s)	20, 35, 383
AgsI	TTSAA	2 cut(s)	352, 566
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	4 cut(s)	64, 96, 344, 376
AluBI	AGCT	6 cut(s)	208, 292, 327, 436, 478, 503
AluI	AGCT	6 cut(s)	208, 292, 327, 436, 478, 503
Alw21I	GWGCWC	1 cut(s)	210
AoxI	GGCC	2 cut(s)	255, 282
ApeKI	GCWGC	4 cut(s)	199, 249, 289, 374
AseI	ATTAAT	1 cut(s)	543
Asp718I	GGTACC	1 cut(s)	33
AspLEI	GCGC	4 cut(s)	124, 169, 449, 557
AspS9I	GGNCC	2 cut(s)	256, 283
AsuC2I	CCSGG	2 cut(s)	188, 269
AsuHPI	GGTGA	1 cut(s)	520
BaeI	ACNNNNGTAYC	1 cut(s)	35
BanI	GGYRCC	2 cut(s)	33, 166
BanII	GRGCYC	2 cut(s)	188, 210
BauI	CACGAG	1 cut(s)	236
BbrPI	CACGTG	2 cut(s)	50, 62
Bbv12I	GWGCWC	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	4 cut(s)	186, 261, 301, 386
BccI	CCATC	1 cut(s)	482
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	281
BcnI	CCSGG	2 cut(s)	188, 269
BfmI	CTRYAG	1 cut(s)	403
BfoI	RGCGCY	1 cut(s)	170
BisI	GCNGC	4 cut(s)	200, 250, 290, 375
BlsI	GCNGC	4 cut(s)	201, 251, 291, 376
BmcAI	AGTACT	1 cut(s)	383
Bme1390I	CCNGG	3 cut(s)	188, 269, 281
BmgT120I	GGNCC	2 cut(s)	256, 283
BmiI	GGNNCC	2 cut(s)	35, 168
BmrFI	CCNGG	3 cut(s)	188, 269, 281
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	453
BmuI	ACTGGG	1 cut(s)	253
Bpu10I	CCTNAGC	1 cut(s)	504
BpuMI	CCSGG	2 cut(s)	188, 269
BsaAI	YACGTR	2 cut(s)	50, 62
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	6, 279
BsaWI	WCCGGW	1 cut(s)	30
Bse118I	RCCGGY	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	6, 279
BseMI	GCAATG	1 cut(s)	564
BseMII	CTCAG	2 cut(s)	29, 495
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	4 cut(s)	186, 261, 301, 386
BseYI	CCCAGC	1 cut(s)	285
BsgI	GTGCAG	1 cut(s)	352
Bsh1236I	CGCG	3 cut(s)	124, 145, 555
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	2 cut(s)	257, 284
BshNI	GGYRCC	2 cut(s)	33, 166
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	5 cut(s)	31, 188, 221, 268, 295
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	2 cut(s)	257, 284
Bsp1286I	GDGCHC	2 cut(s)	188, 210
BspACI	CCGC	3 cut(s)	45, 134, 202
BspANI	GGCC	2 cut(s)	257, 284
BspCNI	CTCAG	2 cut(s)	30, 496
BspFNI	CGCG	3 cut(s)	124, 145, 555
BspLI	GGNNCC	2 cut(s)	35, 168
BspT107I	GGYRCC	2 cut(s)	33, 166
BsrDI	GCAATG	1 cut(s)	564
BsrFI	RCCGGY	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	6, 279
BssNI	GRCGYC	1 cut(s)	167
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	303, 407
BstACI	GRCGYC	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	339
BstBAI	YACGTR	2 cut(s)	50, 62
BstC8I	GCNNGC	2 cut(s)	325, 445
BstDEI	CTNAG	4 cut(s)	38, 459, 504, 535
BstDSI	CCRYGG	1 cut(s)	6
BstFNI	CGCG	3 cut(s)	124, 145, 555
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	4 cut(s)	124, 169, 449, 557
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 295, 339
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	3 cut(s)	186, 267, 279
BstSFI	CTRYAG	1 cut(s)	403
BstUI	CGCG	3 cut(s)	124, 145, 555
BstV1I	GCAGC	4 cut(s)	186, 261, 301, 386
BsuRI	GGCC	2 cut(s)	257, 284
BtgI	CCRYGG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	2 cut(s)	325, 445
CfoI	GCGC	4 cut(s)	124, 169, 449, 557
Cfr10I	RCCGGY	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	256, 283
Csp6I	GTAC	3 cut(s)	19, 34, 382
CviAII	CATG	1 cut(s)	521
CviQI	GTAC	3 cut(s)	19, 34, 382
DdeI	CTNAG	4 cut(s)	38, 459, 504, 535
DinI	GGCGCC	1 cut(s)	168
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	188, 210
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	471
Eco72I	CACGTG	2 cut(s)	50, 62
EcoICRI	GAGCTC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	344
EcoT38I	GRGCYC	2 cut(s)	188, 210
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
FaeI	CATG	1 cut(s)	524
FaiI	YATR	6 cut(s)	344, 346, 430, 473, 522, 583
FatI	CATG	1 cut(s)	520
FauI	CCCGC	1 cut(s)	195
Fnu4HI	GCNGC	4 cut(s)	200, 250, 290, 375
FriOI	GRGCYC	2 cut(s)	188, 210
Fsp4HI	GCNGC	4 cut(s)	200, 250, 290, 375
GlaI	GCGC	4 cut(s)	123, 168, 448, 556
GluI	GCNGC	4 cut(s)	200, 250, 290, 375
GsaI	CCCAGC	1 cut(s)	289
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	257, 284
HapII	CCGG	5 cut(s)	31, 188, 221, 268, 295
HhaI	GCGC	4 cut(s)	124, 169, 449, 557
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	1 cut(s)	524
Hin6I	GCGC	4 cut(s)	122, 167, 447, 555
HinP1I	GCGC	4 cut(s)	122, 167, 447, 555
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	3 cut(s)	65, 114, 215
HpaII	CCGG	5 cut(s)	31, 188, 221, 268, 295
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	3 cut(s)	278, 311, 314
HpyAV	CCTTC	2 cut(s)	90, 185
HpyCH4III	ACNGT	2 cut(s)	303, 407
HpyCH4IV	ACGT	3 cut(s)	17, 49, 61
HpyCH4V	TGCA	3 cut(s)	249, 333, 342
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 295, 339
HpyF3I	CTNAG	4 cut(s)	38, 459, 504, 535
HpySE526I	ACGT	3 cut(s)	17, 49, 61
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	524
HspAI	GCGC	4 cut(s)	122, 167, 447, 555
KasI	GGCGCC	1 cut(s)	166
KpnI	GGTACC	1 cut(s)	37
LmnI	GCTCC	2 cut(s)	205, 297
Lsp1109I	GCAGC	4 cut(s)	186, 261, 301, 386
LweI	GCATC	1 cut(s)	453
MaeII	ACGT	3 cut(s)	17, 49, 61
MaeIII	GTNAC	5 cut(s)	50, 57, 62, 136, 454
MboII	GAAGA	3 cut(s)	75, 78, 81
MhlI	GDGCHC	2 cut(s)	188, 210
MluCI	AATT	4 cut(s)	148, 359, 368, 418
Mly113I	GGCGCC	1 cut(s)	167
MlyI	GAGTC	2 cut(s)	59, 209
MnlI	CCTC	4 cut(s)	87, 245, 247, 499
Mph1103I	ATGCAT	1 cut(s)	344
MseI	TTAA	2 cut(s)	96, 543
MslI	CAYNNNNRTG	1 cut(s)	461
MspI	CCGG	5 cut(s)	31, 188, 221, 268, 295
MspR9I	CCNGG	3 cut(s)	188, 269, 281
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	3 cut(s)	124, 145, 555
MwoI	GCNNNNNNNGC	3 cut(s)	205, 295, 339
NarI	GGCGCC	1 cut(s)	167
NciI	CCSGG	2 cut(s)	188, 269
NlaIII	CATG	1 cut(s)	524
NlaIV	GGNNCC	2 cut(s)	35, 168
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	5 cut(s)	50, 57, 62, 136, 454
NsiI	ATGCAT	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	114
PflFI	GACNNNGTC	1 cut(s)	269
PkrI	GCNGC	4 cut(s)	201, 251, 291, 376
PleI	GAGTC	2 cut(s)	59, 209
PluTI	GGCGCC	1 cut(s)	170
PmaCI	CACGTG	2 cut(s)	50, 62
PmlI	CACGTG	2 cut(s)	50, 62
PpsI	GAGTC	2 cut(s)	59, 209
Ppu21I	YACGTR	2 cut(s)	50, 62
PshBI	ATTAAT	1 cut(s)	543
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	1 cut(s)	279
PspCI	CACGTG	2 cut(s)	50, 62
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	35, 168
PspPI	GGNCC	2 cut(s)	256, 283
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	3 cut(s)	20, 35, 383
RsaNI	GTAC	3 cut(s)	19, 34, 382
RseI	CAYNNNNRTG	1 cut(s)	461
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	96, 543
SatI	GCNGC	4 cut(s)	200, 250, 290, 375
Sau96I	GGNCC	2 cut(s)	256, 283
ScaI	AGTACT	1 cut(s)	383
SchI	GAGTC	2 cut(s)	59, 209
ScrFI	CCNGG	3 cut(s)	188, 269, 281
SduI	GDGCHC	2 cut(s)	188, 210
SfaNI	GCATC	1 cut(s)	453
SfcI	CTRYAG	1 cut(s)	403
SfoI	GGCGCC	1 cut(s)	168
SgrAI	CRCCGGYG	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	4 cut(s)	148, 359, 368, 418
SsiI	CCGC	3 cut(s)	45, 134, 202
SspDI	GGCGCC	1 cut(s)	166
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	3 cut(s)	186, 267, 279
TaaI	ACNGT	2 cut(s)	303, 407
TaiI	ACGT	3 cut(s)	20, 52, 64
TaqI	TCGA	3 cut(s)	104, 210, 264
TasI	AATT	4 cut(s)	148, 359, 368, 418
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	2 cut(s)	96, 543
Tru9I	TTAA	2 cut(s)	96, 543
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	5 cut(s)	50, 57, 62, 136, 454
TseI	GCWGC	4 cut(s)	199, 249, 289, 374
Tsp45I	GTSAC	5 cut(s)	50, 57, 62, 136, 454
TspDTI	ATGAA	2 cut(s)	171, 561
TspRI	CASTG	1 cut(s)	412
Tth111I	GACNNNGTC	1 cut(s)	269
VspI	ATTAAT	1 cut(s)	543
ZrmI	AGTACT	1 cut(s)	383
Zsp2I	ATGCAT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.