Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004408

Physical Location & Seq

Genomic Coordinates Forward (+)

56437402 .. 56439486

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG290900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGTCCGTAGTTCCGACGAATCCTACTCTCAGGTACCTGAGAACCAGGACCGCACGTGACCCGTCACGTGACTCCCCAACCTTCACTTGTTCGCTCAACAAACTCTGGAAAGATGGCAAAAAACAAGCTGAGGTAATTGGTGGTCATGGCAAAGCATATTTAGTGATTAATGAAGTTCGTGCAATGATTGAAACAGACGATAGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

69

Amino Acids

7.74

Weight (kDa)

9.36

Isoelectric Point (pI)

53.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04260
fragaria_vesca	FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880
malus_domestica	MD01G1104800.v1.1
prunus_persica	Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1
pyrus_communis	pycom01g13140
rosa_chinensis	RchiOBHm_Chr1g0362831 RchiOBHm_Chr5g0036621 RchiOBHm_Chr7g0239631
rosa_laevigata	RLG00000027619
rosa_multiflora	Rmu_sc0005055.1_g000016 Rmu_sc0006739.1_g000005 Rmu_sc0035177.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293730 Rroxscaffold_5G00347900
rosa_rugosa	Rorug01G0301700 Rorug01G0301800 Rorug06G0050200
rosa_samantha	Rh1AG310600 Rh1BG029700 Rh1BG273700 Rh1CG290900 Rh1DG304500 Rh2CG160200 Rh5CG416200
rosa_wichuraiana	Rw1G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	33
AciI	CCGC	1 cut(s)	51
AcvI	CACGTG	2 cut(s)	56, 68
AfaI	GTAC	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AseI	ATTAAT	1 cut(s)	168
Asp718I	GGTACC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	33
BbrPI	CACGTG	2 cut(s)	56, 68
BbvCI	CCTCAGC	1 cut(s)	129
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	129
BsaAI	YACGTR	2 cut(s)	56, 68
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	29, 43, 120
BshNI	GGYRCC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	51
BspCNI	CTCAG	3 cut(s)	30, 42, 121
BspLI	GGNNCC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	46
BstBAI	YACGTR	2 cut(s)	56, 68
BstDEI	CTNAG	3 cut(s)	29, 38, 129
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	1 cut(s)	128
CviKI_1	RGCY	1 cut(s)	128
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	3 cut(s)	29, 38, 129
Eco47I	GGWCC	1 cut(s)	48
Eco72I	CACGTG	2 cut(s)	56, 68
EcoRII	CCWGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	149
FaiI	YATR	3 cut(s)	147, 157, 208
FatI	CATG	1 cut(s)	145
Hin1II	CATG	1 cut(s)	149
HinfI	GANTC	2 cut(s)	19, 71
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	91
HpyCH4IV	ACGT	2 cut(s)	55, 67
HpyCH4V	TGCA	1 cut(s)	182
HpyF3I	CTNAG	3 cut(s)	29, 38, 129
HpySE526I	ACGT	2 cut(s)	55, 67
Hsp92II	CATG	1 cut(s)	149
KpnI	GGTACC	1 cut(s)	37
LpnPI	CCDG	5 cut(s)	16, 31, 50, 58, 91
MaeII	ACGT	2 cut(s)	55, 67
MaeIII	GTNAC	3 cut(s)	56, 63, 68
MluCI	AATT	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	1 cut(s)	124
MseI	TTAA	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	3 cut(s)	56, 63, 68
PfeI	GAWTC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	65
PmaCI	CACGTG	2 cut(s)	56, 68
PmlI	CACGTG	2 cut(s)	56, 68
PpsI	GAGTC	1 cut(s)	65
Ppu21I	YACGTR	2 cut(s)	56, 68
PshBI	ATTAAT	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	44
PspCI	CACGTG	2 cut(s)	56, 68
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	48
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	168
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	46
SetI	ASST	7 cut(s)	35, 39, 58, 70, 83, 130, 135
SinI	GGWCC	1 cut(s)	48
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	44
TaiI	ACGT	2 cut(s)	58, 70
TasI	AATT	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseFI	GTSAC	3 cut(s)	56, 63, 68
Tsp45I	GTSAC	3 cut(s)	56, 63, 68
TspDTI	ATGAA	1 cut(s)	186
VpaK11BI	GGWCC	1 cut(s)	48
VspI	ATTAAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.