Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004408

Physical Location & Seq

Genomic Coordinates Forward (+)

55089864 .. 55091948

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G027530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCCGTAGTTCCGACGAATCCTACTCTCAGGTACCTGAGAACCAGGACCGCACGTGACCCGTCACGTGACTCCCCAACCTTCACTTGTTCGCTCAACAAAGTTTCAATCTTGGGATTCAGGGCGGCAAATTCGCTGGTGTTGTACCGTAAATTCGATGAAATCCGGGGGCCGATGATAAGGGCTTTGAGCCCAGAAGGGTCGTTGCGAGAGCTCGATGATTCGCCGGTCTCCGTGGAGCTCGCGCCCATTTGCAGCGAGGCCCAGTTCGATCGGGTCGTCGCCGAGGCCCAACAGCTCCTGCAATCGTTCGTCGTCGTTTGGATGGCAAGCTGGTGCAGGAAGTGCATATATTTGAAACCAAAGTTGGAGAAGTTGGCAGCTGAGTACCATCCAAGATTGCTGTTCTACAGTGTTGATGTCAATTCAGTTCCACACAAGCTTGTTGCTCGCGCTGAAGTCACTAAAATGCCTACTATACAGCTCTGGAAAGATGGCAAGAAACAAGCTGAGGTAATTGGTGGTCATGGCAAAGCATATTTAGTGATTAATGAAGTTCGTGCAATGATTGAAACAGACGATAGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

196

Amino Acids

22.11

Weight (kDa)

9.06

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	86 - 181	2.9e-16	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04260
fragaria_vesca	FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880
malus_domestica	MD01G1104800.v1.1
prunus_persica	Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1
pyrus_communis	pycom01g13140
rosa_chinensis	RchiOBHm_Chr1g0362831 RchiOBHm_Chr5g0036621 RchiOBHm_Chr7g0239631
rosa_laevigata	RLG00000027619
rosa_multiflora	Rmu_sc0005055.1_g000016 Rmu_sc0006739.1_g000005 Rmu_sc0035177.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293730 Rroxscaffold_5G00347900
rosa_rugosa	Rorug01G0301700 Rorug01G0301800 Rorug06G0050200
rosa_samantha	Rh1AG310600 Rh1BG029700 Rh1BG273700 Rh1CG290900 Rh1DG304500 Rh2CG160200 Rh5CG416200
rosa_wichuraiana	Rw1G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	33
AccII	CGCG	2 cut(s)	245, 453
AciI	CCGC	2 cut(s)	51, 125
AcsI	RAATTY	2 cut(s)	130, 152
AcuI	CTGAAG	1 cut(s)	477
AcvI	CACGTG	2 cut(s)	56, 68
AfaI	GTAC	3 cut(s)	35, 146, 389
AgsI	TTSAA	3 cut(s)	108, 358, 572
AjnI	CCWGG	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	350, 382
AluBI	AGCT	8 cut(s)	214, 241, 298, 333, 383, 442, 484, 509
AluI	AGCT	8 cut(s)	214, 241, 298, 333, 383, 442, 484, 509
Alw21I	GWGCWC	2 cut(s)	216, 243
Alw26I	GTCTC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	301
AoxI	GGCC	3 cut(s)	170, 261, 288
ApeKI	GCWGC	2 cut(s)	255, 380
ApoI	RAATTY	2 cut(s)	130, 152
AseI	ATTAAT	1 cut(s)	549
Asp718I	GGTACC	1 cut(s)	33
AspLEI	GCGC	2 cut(s)	247, 455
AspS9I	GGNCC	4 cut(s)	48, 170, 262, 289
AsuC2I	CCSGG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	33
BanII	GRGCYC	3 cut(s)	194, 216, 243
BbrPI	CACGTG	2 cut(s)	56, 68
Bbv12I	GWGCWC	2 cut(s)	216, 243
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	267, 392
BccI	CCATC	3 cut(s)	319, 399, 488
BciT130I	CCWGG	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	235
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	3 cut(s)	126, 256, 381
BlsI	GCNGC	3 cut(s)	127, 257, 382
Bme1390I	CCNGG	2 cut(s)	46, 167
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	4 cut(s)	48, 170, 262, 289
BmiI	GGNNCC	2 cut(s)	35, 171
BmrFI	CCNGG	2 cut(s)	46, 167
BmrI	ACTGGG	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	259
Bpu10I	CCTNAGC	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	167
BsaAI	YACGTR	2 cut(s)	56, 68
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	3 cut(s)	166, 234, 285
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	3 cut(s)	166, 234, 285
BseGI	GGATG	2 cut(s)	330, 391
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	4 cut(s)	29, 43, 375, 501
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	267, 392
BsgI	GTGCAG	1 cut(s)	358
Bsh1236I	CGCG	2 cut(s)	245, 453
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	3 cut(s)	172, 263, 290
BshNI	GGYRCC	1 cut(s)	33
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	2 cut(s)	216, 243
BsiSI	CCGG	2 cut(s)	166, 227
BsmAI	GTCTC	1 cut(s)	235
BsnI	GGCC	3 cut(s)	172, 263, 290
Bso31I	GGTCTC	1 cut(s)	235
Bsp1286I	GDGCHC	3 cut(s)	194, 216, 243
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	2 cut(s)	51, 125
BspANI	GGCC	3 cut(s)	172, 263, 290
BspCNI	CTCAG	4 cut(s)	30, 42, 376, 502
BspFNI	CGCG	2 cut(s)	245, 453
BspLI	GGNNCC	2 cut(s)	35, 171
BspT107I	GGYRCC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	570
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	3 cut(s)	166, 234, 285
BssMI	GATC	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	149, 413
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstBAI	YACGTR	2 cut(s)	56, 68
BstC8I	GCNNGC	3 cut(s)	243, 331, 451
BstDEI	CTNAG	4 cut(s)	29, 38, 384, 510
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	330, 391
BstFNI	CGCG	2 cut(s)	245, 453
BstHHI	GCGC	2 cut(s)	247, 455
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	271
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	2 cut(s)	44, 165
BstSFI	CTRYAG	1 cut(s)	409
BstUI	CGCG	2 cut(s)	245, 453
BstV1I	GCAGC	2 cut(s)	267, 392
BsuRI	GGCC	3 cut(s)	172, 263, 290
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	330, 391
BtsIMutI	CAGTG	1 cut(s)	418
Cac8I	GCNNGC	3 cut(s)	243, 331, 451
CaiI	CAGNNNCTG	1 cut(s)	301
CfoI	GCGC	2 cut(s)	247, 455
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	4 cut(s)	48, 170, 262, 289
Csp6I	GTAC	3 cut(s)	34, 145, 388
CviAII	CATG	1 cut(s)	527
CviQI	GTAC	3 cut(s)	34, 145, 388
DdeI	CTNAG	4 cut(s)	29, 38, 384, 510
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Ecl136II	GAGCTC	2 cut(s)	214, 241
Eco24I	GRGCYC	3 cut(s)	194, 216, 243
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	48
Eco53kI	GAGCTC	2 cut(s)	214, 241
Eco57I	CTGAAG	1 cut(s)	477
Eco72I	CACGTG	2 cut(s)	56, 68
EcoICRI	GAGCTC	2 cut(s)	214, 241
EcoRII	CCWGG	1 cut(s)	44
EcoT38I	GRGCYC	3 cut(s)	194, 216, 243
FaeI	CATG	1 cut(s)	530
FaiI	YATR	6 cut(s)	350, 352, 479, 528, 538, 589
FatI	CATG	1 cut(s)	526
Fnu4HI	GCNGC	3 cut(s)	126, 256, 381
FokI	GGATG	2 cut(s)	337, 378
FriOI	GRGCYC	3 cut(s)	194, 216, 243
Fsp4HI	GCNGC	3 cut(s)	126, 256, 381
GlaI	GCGC	2 cut(s)	246, 454
GluI	GCNGC	3 cut(s)	126, 256, 381
HaeIII	GGCC	3 cut(s)	172, 263, 290
HapII	CCGG	2 cut(s)	166, 227
HhaI	GCGC	2 cut(s)	247, 455
Hin1II	CATG	1 cut(s)	530
Hin6I	GCGC	2 cut(s)	245, 453
HinP1I	GCGC	2 cut(s)	245, 453
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	4 cut(s)	19, 71, 117, 221
HpaII	CCGG	2 cut(s)	166, 227
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	487
Hpy99I	CGWCG	4 cut(s)	19, 284, 317, 320
HpyAV	CCTTC	2 cut(s)	91, 191
HpyCH4III	ACNGT	2 cut(s)	149, 413
HpyCH4IV	ACGT	2 cut(s)	55, 67
HpyCH4V	TGCA	5 cut(s)	255, 304, 339, 348, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	4 cut(s)	29, 38, 384, 510
HpySE526I	ACGT	2 cut(s)	55, 67
Hsp92II	CATG	1 cut(s)	530
HspAI	GCGC	2 cut(s)	245, 453
KpnI	GGTACC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	2 cut(s)	238, 303
Lsp1109I	GCAGC	2 cut(s)	267, 392
MaeII	ACGT	2 cut(s)	55, 67
MaeIII	GTNAC	4 cut(s)	56, 63, 68, 460
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MhlI	GDGCHC	3 cut(s)	194, 216, 243
MluCI	AATT	4 cut(s)	130, 152, 424, 516
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	38, 348
MnlI	CCTC	3 cut(s)	253, 280, 505
MseI	TTAA	1 cut(s)	549
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	2 cut(s)	166, 227
MspR9I	CCNGG	2 cut(s)	46, 167
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	2 cut(s)	245, 453
MwoI	GCNNNNNNNGC	1 cut(s)	345
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	530
NlaIV	GGNNCC	2 cut(s)	35, 171
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	4 cut(s)	56, 63, 68, 460
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	19, 117, 221
PkrI	GCNGC	3 cut(s)	127, 257, 382
Ple19I	CGATCG	1 cut(s)	274
PleI	GAGTC	1 cut(s)	65
PmaCI	CACGTG	2 cut(s)	56, 68
PmlI	CACGTG	2 cut(s)	56, 68
PpsI	GAGTC	1 cut(s)	65
Ppu21I	YACGTR	2 cut(s)	56, 68
PshBI	ATTAAT	1 cut(s)	549
Psp124BI	GAGCTC	2 cut(s)	216, 243
Psp6I	CCWGG	1 cut(s)	44
PspCI	CACGTG	2 cut(s)	56, 68
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	35, 171
PspPI	GGNCC	4 cut(s)	48, 170, 262, 289
PstNI	CAGNNNCTG	1 cut(s)	301
PvuI	CGATCG	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	3 cut(s)	35, 146, 389
RsaNI	GTAC	3 cut(s)	34, 145, 388
RseI	CAYNNNNRTG	1 cut(s)	467
SacI	GAGCTC	2 cut(s)	216, 243
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	3 cut(s)	126, 256, 381
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	4 cut(s)	48, 170, 262, 289
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	46, 167
SduI	GDGCHC	3 cut(s)	194, 216, 243
SfcI	CTRYAG	1 cut(s)	409
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	467
Sse9I	AATT	4 cut(s)	130, 152, 424, 516
SsiI	CCGC	2 cut(s)	51, 125
SstI	GAGCTC	2 cut(s)	216, 243
StyD4I	CCNGG	2 cut(s)	44, 165
TaaI	ACNGT	2 cut(s)	149, 413
TaiI	ACGT	2 cut(s)	58, 70
TaqI	TCGA	3 cut(s)	156, 216, 270
TasI	AATT	4 cut(s)	130, 152, 424, 516
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	3 cut(s)	19, 117, 221
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	4 cut(s)	56, 63, 68, 460
TseI	GCWGC	2 cut(s)	255, 380
Tsp45I	GTSAC	4 cut(s)	56, 63, 68, 460
TspDTI	ATGAA	2 cut(s)	174, 567
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	48
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	2 cut(s)	130, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.