Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004408

Physical Location & Seq

Genomic Coordinates Forward (+)

13982962 .. 13983228

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG160200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCAAGCTGGTGCAGGACATGCATATATTTGAAACCGAAGTTGGAGAAATTGGCATCTGCGTACTATCCAAGTTTACCATTCTGTAGCGTTGATGTCAACTCAGTCCCACACAAGCTTGTTGCTTGCGCTGAAGTCACTAGGATGCCTAATAAACAGCTCTGGAAAGATGGCGAGAAACAAGCTGAGGTAATCGGTGGTCATGGCAAAGCATATTCAGTGATTAATGAAGTTCGTGCAATGATTGAAACTGACAATAGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

88

Amino Acids

9.82

Weight (kDa)

8.38

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	2 - 70	5.1e-10	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04260
fragaria_vesca	FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880
malus_domestica	MD01G1104800.v1.1
prunus_persica	Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1
pyrus_communis	pycom01g13140
rosa_chinensis	RchiOBHm_Chr1g0362831 RchiOBHm_Chr5g0036621 RchiOBHm_Chr7g0239631
rosa_laevigata	RLG00000027619
rosa_multiflora	Rmu_sc0005055.1_g000016 Rmu_sc0006739.1_g000005 Rmu_sc0035177.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293730 Rroxscaffold_5G00347900
rosa_rugosa	Rorug01G0301700 Rorug01G0301800 Rorug06G0050200
rosa_samantha	Rh1AG310600 Rh1BG029700 Rh1BG273700 Rh1CG290900 Rh1DG304500 Rh2CG160200 Rh5CG416200
rosa_wichuraiana	Rw1G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	34, 248
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	4 cut(s)	9, 118, 160, 185
AluI	AGCT	4 cut(s)	9, 118, 160, 185
AseI	ATTAAT	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	131
BbvCI	CCTCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	85
BmsI	GCATC	2 cut(s)	65, 135
Bpu10I	CCTNAGC	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	117, 177
BsgI	GTGCAG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	116, 178
BsrDI	GCAATG	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	7, 127
BstDEI	CTNAG	2 cut(s)	103, 186
BstF5I	GGATG	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNSI	RCATGY	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	7, 127
CfoI	GCGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	2 cut(s)	21, 203
CviJI	RGCY	4 cut(s)	9, 118, 160, 185
CviKI_1	RGCY	4 cut(s)	9, 118, 160, 185
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	2 cut(s)	103, 186
Eco57I	CTGAAG	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	26
FaeI	CATG	2 cut(s)	24, 206
FaiI	YATR	6 cut(s)	22, 26, 28, 204, 214, 265
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	2 cut(s)	20, 202
FokI	GGATG	1 cut(s)	157
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	24, 206
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	116
Hpy166II	GTNNAC	2 cut(s)	77, 100
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	2 cut(s)	77, 100
HpyCH4V	TGCA	3 cut(s)	15, 24, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
HpyF3I	CTNAG	2 cut(s)	103, 186
Hsp92II	CATG	2 cut(s)	24, 206
HspAI	GCGC	1 cut(s)	129
LpnPI	CCDG	1 cut(s)	148
LweI	GCATC	2 cut(s)	65, 135
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	136
MluCI	AATT	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	1 cut(s)	181
Mph1103I	ATGCAT	1 cut(s)	26
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	21
NlaIII	CATG	2 cut(s)	24, 206
NmuCI	GTSAC	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	26
NspI	RCATGY	1 cut(s)	24
PshBI	ATTAAT	1 cut(s)	225
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	225
SetI	ASST	5 cut(s)	11, 120, 162, 187, 192
SfaNI	GCATC	2 cut(s)	65, 135
SfcI	CTRYAG	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	50
SspMI	CTAG	1 cut(s)	141
TasI	AATT	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	225
VspI	ATTAAT	1 cut(s)	225
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.