Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035177.1

Orthogroup ID

OG0004408

Physical Location & Seq

Genomic Coordinates Forward (+)

4967 .. 5296

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035177.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgtccgtagttccgacgaatcctactctcaggtacctgagaaccaggaccgcacgtgactccccaaccttcacttgttcgctcaacaaagtttcaatcttgggattcagggcgccgaattcgctggtgttgtcccgtaaattcgatgaaatccgggggccgatgataagggctttgagcccagaagggtcgttgcgagagctcgatgattcgccggtctccgtggagctcgcgcccatttgcagcgaggcccagttcgatcgggtcgtcgccgaggcccaacagctcctgcaatcgttcgtcgtcgtttggtgcgtttctgggtcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

109

Amino Acids

12.03

Weight (kDa)

7.72

Isoelectric Point (pI)

58.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04260
fragaria_vesca	FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880
malus_domestica	MD01G1104800.v1.1
prunus_persica	Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1
pyrus_communis	pycom01g13140
rosa_chinensis	RchiOBHm_Chr1g0362831 RchiOBHm_Chr5g0036621 RchiOBHm_Chr7g0239631
rosa_laevigata	RLG00000027619
rosa_multiflora	Rmu_sc0005055.1_g000016 Rmu_sc0006739.1_g000005 Rmu_sc0035177.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293730 Rroxscaffold_5G00347900
rosa_rugosa	Rorug01G0301700 Rorug01G0301800 Rorug06G0050200
rosa_samantha	Rh1AG310600 Rh1BG029700 Rh1BG273700 Rh1CG290900 Rh1DG304500 Rh2CG160200 Rh5CG416200
rosa_wichuraiana	Rw1G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	33
AccB1I	GGYRCC	2 cut(s)	33, 112
AccII	CGCG	1 cut(s)	233
AciI	CCGC	1 cut(s)	51
AcsI	RAATTY	2 cut(s)	118, 140
AcvI	CACGTG	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	3 cut(s)	202, 229, 286
AluI	AGCT	3 cut(s)	202, 229, 286
Alw21I	GWGCWC	2 cut(s)	204, 231
Alw26I	GTCTC	1 cut(s)	223
AlwNI	CAGNNNCTG	1 cut(s)	289
AoxI	GGCC	3 cut(s)	158, 249, 276
ApeKI	GCWGC	1 cut(s)	243
ApoI	RAATTY	2 cut(s)	118, 140
Asp718I	GGTACC	1 cut(s)	33
AspLEI	GCGC	2 cut(s)	115, 235
AspS9I	GGNCC	4 cut(s)	48, 158, 250, 277
AsuC2I	CCSGG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	48
BanI	GGYRCC	2 cut(s)	33, 112
BanII	GRGCYC	3 cut(s)	182, 204, 231
BbrPI	CACGTG	1 cut(s)	56
Bbv12I	GWGCWC	2 cut(s)	204, 231
BbvI	GCAGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	223
BfoI	RGCGCY	1 cut(s)	116
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	2 cut(s)	46, 155
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	4 cut(s)	48, 158, 250, 277
BmiI	GGNNCC	3 cut(s)	35, 114, 159
BmrFI	CCNGG	2 cut(s)	46, 155
BmrI	ACTGGG	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	247
BpuMI	CCSGG	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	56
BsaHI	GRCGYC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	3 cut(s)	154, 222, 273
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	3 cut(s)	154, 222, 273
BseMII	CTCAG	2 cut(s)	29, 43
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	233
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	3 cut(s)	160, 251, 278
BshNI	GGYRCC	2 cut(s)	33, 112
BsiEI	CGRYCG	1 cut(s)	262
BsiHKAI	GWGCWC	2 cut(s)	204, 231
BsiSI	CCGG	2 cut(s)	154, 215
BslFI	GGGAC	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	3 cut(s)	160, 251, 278
Bso31I	GGTCTC	1 cut(s)	223
Bsp1286I	GDGCHC	3 cut(s)	182, 204, 231
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	3 cut(s)	160, 251, 278
BspCNI	CTCAG	2 cut(s)	30, 42
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	3 cut(s)	35, 114, 159
BspT107I	GGYRCC	2 cut(s)	33, 112
BspTNI	GGTCTC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	3 cut(s)	154, 222, 273
BssMI	GATC	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	29, 38
BstDSI	CCRYGG	1 cut(s)	222
BstFNI	CGCG	1 cut(s)	233
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	2 cut(s)	115, 235
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	259
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	2 cut(s)	44, 153
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	255
BsuRI	GGCC	3 cut(s)	160, 251, 278
BtgI	CCRYGG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	231
CaiI	CAGNNNCTG	1 cut(s)	289
CfoI	GCGC	2 cut(s)	115, 235
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	4 cut(s)	48, 158, 250, 277
Csp6I	GTAC	1 cut(s)	34
CviJI	RGCY	8 cut(s)	160, 173, 180, 202, 229, 251, 278, 286
CviKI_1	RGCY	8 cut(s)	160, 173, 180, 202, 229, 251, 278, 286
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	29, 38
DinI	GGCGCC	1 cut(s)	114
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Ecl136II	GAGCTC	2 cut(s)	202, 229
Eco24I	GRGCYC	3 cut(s)	182, 204, 231
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	48
Eco53kI	GAGCTC	2 cut(s)	202, 229
Eco72I	CACGTG	1 cut(s)	56
EcoICRI	GAGCTC	2 cut(s)	202, 229
EcoRI	GAATTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	44
EcoT38I	GRGCYC	3 cut(s)	182, 204, 231
EgeI	GGCGCC	1 cut(s)	114
EheI	GGCGCC	1 cut(s)	114
FaqI	GGGAC	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	244
FriOI	GRGCYC	3 cut(s)	182, 204, 231
Fsp4HI	GCNGC	1 cut(s)	244
GlaI	GCGC	2 cut(s)	114, 234
GluI	GCNGC	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	3 cut(s)	160, 251, 278
HapII	CCGG	2 cut(s)	154, 215
HhaI	GCGC	2 cut(s)	115, 235
Hin1I	GRCGYC	1 cut(s)	113
Hin6I	GCGC	2 cut(s)	113, 233
HinP1I	GCGC	2 cut(s)	113, 233
HinfI	GANTC	4 cut(s)	19, 59, 105, 209
HpaII	CCGG	2 cut(s)	154, 215
Hpy188I	TCNGA	1 cut(s)	15
Hpy99I	CGWCG	4 cut(s)	19, 272, 305, 308
HpyAV	CCTTC	2 cut(s)	79, 179
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	243, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	29, 38
HpySE526I	ACGT	1 cut(s)	55
Hsp92I	GRCGYC	1 cut(s)	113
HspAI	GCGC	2 cut(s)	113, 233
KasI	GGCGCC	1 cut(s)	112
KpnI	GGTACC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	226, 291
Lsp1109I	GCAGC	1 cut(s)	255
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MhlI	GDGCHC	3 cut(s)	182, 204, 231
MluCI	AATT	2 cut(s)	118, 140
Mly113I	GGCGCC	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	2 cut(s)	241, 268
MseI	TTAA	1 cut(s)	328
MspI	CCGG	2 cut(s)	154, 215
MspR9I	CCNGG	2 cut(s)	46, 155
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	121
NarI	GGCGCC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	1 cut(s)	259
NlaIV	GGNNCC	3 cut(s)	35, 114, 159
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 312
PfeI	GAWTC	3 cut(s)	19, 105, 209
PkrI	GCNGC	1 cut(s)	245
Ple19I	CGATCG	1 cut(s)	262
PleI	GAGTC	1 cut(s)	53
PluTI	GGCGCC	1 cut(s)	116
PmaCI	CACGTG	1 cut(s)	56
PmlI	CACGTG	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	56
Psp124BI	GAGCTC	2 cut(s)	204, 231
Psp6I	CCWGG	1 cut(s)	44
PspCI	CACGTG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	3 cut(s)	35, 114, 159
PspPI	GGNCC	4 cut(s)	48, 158, 250, 277
PstNI	CAGNNNCTG	1 cut(s)	289
PvuI	CGATCG	1 cut(s)	262
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SacI	GAGCTC	2 cut(s)	204, 231
SaqAI	TTAA	1 cut(s)	328
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	4 cut(s)	48, 158, 250, 277
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	46, 155
SduI	GDGCHC	3 cut(s)	182, 204, 231
SetI	ASST	7 cut(s)	35, 39, 58, 71, 204, 231, 288
SfoI	GGCGCC	1 cut(s)	114
SinI	GGWCC	1 cut(s)	48
Sse9I	AATT	2 cut(s)	118, 140
SsiI	CCGC	1 cut(s)	51
SspDI	GGCGCC	1 cut(s)	112
SstI	GAGCTC	2 cut(s)	204, 231
StyD4I	CCNGG	2 cut(s)	44, 153
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	144, 204, 258
TasI	AATT	2 cut(s)	118, 140
TfiI	GAWTC	3 cut(s)	19, 105, 209
Tru1I	TTAA	1 cut(s)	328
Tru9I	TTAA	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	48
XapI	RAATTY	2 cut(s)	118, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.