Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006739.1

Orthogroup ID

OG0004408

Physical Location & Seq

Genomic Coordinates Forward (+)

21680 .. 24989

Gene Structure 3310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006739.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atggaaaacaaaaccctcatacataaaaggaaacggacaaaggtcgctaaggaaggtaggttggataaacgtccttgctccaacggaggtaatgagtttcccaagttggttgagaaagtagttgtcaaccgtgaggatgtcactgaggctgttgaagaaaatgtcaatctgaccaaggagccggagaatgaggagggggtagaatatgtggatttgacgatgtgtccacccacatcaaagtcaaaggtagctgaggttgaatgcaagttggcaataggttctgttgaacatattgttgcttgtgccactgttatggagtgcgaggatccttcccaacttgttcatggcactccactagggaatggcaatgtgcgcgtttctatctatgccgcgcttgaggagaaagcaaaagtgccatttcctgtgaaagatgaaattgaaacagtgaagcaggctatggggagttggggcattcctccccaacctagcaacaaggagtgtggatactttatcatgcgatacatgagagatatcattgaggataaagacatgtcattgtttcctacgaagctgcgcatggcatctgccgagctatctgtcgagccatcacacaacagttataacacatacccgttgcctgtttgtttatcagacaactgtgttccaccgttgtctgaattttcaacagacaacggctccctctacaacggtggcactccaaatcagataacagtttctgtctgtcgtctgataaggattttggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 Transposase_24

Protein Analysis

255

Amino Acids

28.26

Weight (kDa)

5.32

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04260
fragaria_vesca	FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880
malus_domestica	MD01G1104800.v1.1
prunus_persica	Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1
pyrus_communis	pycom01g13140
rosa_chinensis	RchiOBHm_Chr1g0362831 RchiOBHm_Chr5g0036621 RchiOBHm_Chr7g0239631
rosa_laevigata	RLG00000027619
rosa_multiflora	Rmu_sc0005055.1_g000016 Rmu_sc0006739.1_g000005 Rmu_sc0035177.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293730 Rroxscaffold_5G00347900
rosa_rugosa	Rorug01G0301700 Rorug01G0301800 Rorug06G0050200
rosa_samantha	Rh1AG310600 Rh1BG029700 Rh1BG273700 Rh1CG290900 Rh1DG304500 Rh2CG160200 Rh5CG416200
rosa_wichuraiana	Rw1G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
Acc16I	TGCGCA	1 cut(s)	575
AccII	CGCG	2 cut(s)	375, 392
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	2 cut(s)	320, 333
AcsI	RAATTY	1 cut(s)	677
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	5 cut(s)	155, 260, 287, 440, 684
AhdI	GACNNNNNGTC	1 cut(s)	222
AluBI	AGCT	3 cut(s)	251, 571, 592
AluI	AGCT	3 cut(s)	251, 571, 592
AlwI	GGATC	2 cut(s)	320, 333
AlwNI	CAGNNNCTG	1 cut(s)	737
ApeKI	GCWGC	1 cut(s)	571
ApoI	RAATTY	1 cut(s)	677
AspLEI	GCGC	3 cut(s)	375, 394, 576
BamHI	GGATCC	1 cut(s)	325
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	558
BccI	CCATC	1 cut(s)	613
BceAI	ACGGC	1 cut(s)	709
BciVI	GTATCC	1 cut(s)	497
BfaI	CTAG	2 cut(s)	356, 486
BfuI	GTATCC	1 cut(s)	497
BisI	GCNGC	2 cut(s)	390, 572
BlsI	GCNGC	2 cut(s)	391, 573
BmeRI	GACNNNNNGTC	1 cut(s)	222
BmiI	GGNNCC	3 cut(s)	180, 327, 697
BmsI	GCATC	1 cut(s)	590
BoxI	GACNNNNGTC	1 cut(s)	41
Bpu10I	CCTNAGC	2 cut(s)	48, 252
BpuEI	CTTGAG	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	680, 710
Bse3DI	GCAATG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	135, 243
BseRI	GAGGAG	2 cut(s)	206, 413
BseXI	GCAGC	1 cut(s)	558
Bsh1236I	CGCG	2 cut(s)	375, 392
BsiSI	CCGG	1 cut(s)	182
BsmI	GAATGC	2 cut(s)	266, 471
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	1 cut(s)	390
BspCNI	CTCAG	2 cut(s)	136, 244
BspFNI	CGCG	2 cut(s)	375, 392
BspLI	GGNNCC	3 cut(s)	180, 327, 697
BspPI	GGATC	2 cut(s)	320, 333
BsrDI	GCAATG	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	8 cut(s)	131, 310, 445, 617, 659, 669, 710, 733
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	3 cut(s)	48, 144, 252
BstF5I	GGATG	1 cut(s)	142
BstFNI	CGCG	2 cut(s)	375, 392
BstHHI	GCGC	3 cut(s)	375, 394, 576
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	553
BstPAI	GACNNNNGTC	1 cut(s)	41
BstUI	CGCG	2 cut(s)	375, 392
BstV1I	GCAGC	1 cut(s)	558
BstX2I	RGATCY	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	497
BtsCI	GGATG	1 cut(s)	142
BtsIMutI	CAGTG	3 cut(s)	141, 306, 450
Cac8I	GCNNGC	1 cut(s)	453
CaiI	CAGNNNCTG	1 cut(s)	737
CfoI	GCGC	3 cut(s)	375, 394, 576
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	5 cut(s)	344, 514, 523, 550, 577
CviJI	RGCY	8 cut(s)	149, 181, 251, 455, 571, 592, 604, 696
CviKI_1	RGCY	8 cut(s)	149, 181, 251, 455, 571, 592, 604, 696
DdeI	CTNAG	3 cut(s)	48, 144, 252
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
DriI	GACNNNNNGTC	1 cut(s)	222
Eam1105I	GACNNNNNGTC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	532
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	5 cut(s)	347, 517, 526, 553, 580
FatI	CATG	5 cut(s)	343, 513, 522, 549, 576
Fnu4HI	GCNGC	2 cut(s)	390, 572
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	2 cut(s)	390, 572
FspBI	CTAG	2 cut(s)	356, 486
FspI	TGCGCA	1 cut(s)	575
GlaI	GCGC	3 cut(s)	374, 393, 575
GluI	GCNGC	2 cut(s)	390, 572
HapII	CCGG	1 cut(s)	182
HhaI	GCGC	3 cut(s)	375, 394, 576
Hin1II	CATG	5 cut(s)	347, 517, 526, 553, 580
Hin6I	GCGC	3 cut(s)	373, 392, 574
HinP1I	GCGC	3 cut(s)	373, 392, 574
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	127, 227
Hpy188I	TCNGA	5 cut(s)	171, 652, 676, 726, 750
Hpy8I	GTNNAC	2 cut(s)	127, 227
HpyAV	CCTTC	2 cut(s)	47, 339
HpyCH4III	ACNGT	8 cut(s)	131, 310, 445, 617, 659, 669, 710, 733
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpyF3I	CTNAG	3 cut(s)	48, 144, 252
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	5 cut(s)	347, 517, 526, 553, 580
HspAI	GCGC	3 cut(s)	373, 392, 574
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	3 cut(s)	83, 178, 701
LpnPI	CCDG	4 cut(s)	195, 435, 437, 651
Lsp1109I	GCAGC	1 cut(s)	558
LweI	GCATC	1 cut(s)	590
MaeI	CTAG	2 cut(s)	356, 486
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	1 cut(s)	167
MflI	RGATCY	1 cut(s)	325
MluCI	AATT	2 cut(s)	435, 677
MmeI	TCCRAC	2 cut(s)	42, 105
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	1 cut(s)	182
Mva1269I	GAATGC	2 cut(s)	266, 471
MvnI	CGCG	2 cut(s)	375, 392
MwoI	GCNNNNNNNGC	1 cut(s)	372
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	5 cut(s)	347, 517, 526, 553, 580
NlaIV	GGNNCC	3 cut(s)	180, 327, 697
NmeAIII	GCCGAG	1 cut(s)	613
NmuCI	GTSAC	1 cut(s)	139
NsbI	TGCGCA	1 cut(s)	575
NspI	RCATGY	1 cut(s)	553
PciI	ACATGT	1 cut(s)	549
PctI	GAATGC	2 cut(s)	266, 471
PkrI	GCNGC	2 cut(s)	391, 573
PscI	ACATGT	1 cut(s)	549
PshAI	GACNNNNGTC	1 cut(s)	41
PsiI	TTATAA	1 cut(s)	621
PspN4I	GGNNCC	3 cut(s)	180, 327, 697
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	311
SatI	GCNGC	2 cut(s)	390, 572
Sau3AI	GATC	1 cut(s)	325
SfaNI	GCATC	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	2 cut(s)	435, 677
SsiI	CCGC	1 cut(s)	390
SspMI	CTAG	2 cut(s)	356, 486
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	8 cut(s)	131, 310, 445, 617, 659, 669, 710, 733
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	600
TasI	AATT	2 cut(s)	435, 677
TauI	GCSGC	1 cut(s)	392
TscAI	CASTG	3 cut(s)	148, 313, 450
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	571
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	332, 447
TspGWI	ACGGA	2 cut(s)	49, 99
TspRI	CASTG	3 cut(s)	148, 313, 450
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	1 cut(s)	553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XspI	CTAG	2 cut(s)	356, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.