Rorug06G0050200

Thioredoxin-like 3-2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004408
Physical Location & Seq
Reverse (-)
6871417 .. 6872106
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0050200.1

Sequence Viewer

Length: 690 bp
ATGAAACGCCGATGCTTCAAATCTGTTGATGAAGCCGAGCAGTTTTATTCAAAGTACTCCCTCACAATCAGTTTTGGATACCAACTGGGAGATGTAGGATATAACAAAGATGGTCGGATAACGAGAAGGGAGTTTTTGTGCTCAAAGGAAGGGGTGAGATCACCTAAGTGGCTTGTGAAGAAGGATAGGGTCCGTTCTCCGAAAAGAGAAACTCGGGAGGGTTGCAAGGCAAAGATACGAGTGCTTTATAAAAAAGGCTCGGGAGTGTATGTCGTAAGAGCATTCGTAAGTGTGCACACCCACCCACTCACATCTCGAATTGAGTCCCCATTCTTGCGATCCCACCGAGAAGTGAAGGAAGCAGACCTGGCTCGTGCCCAAGCCATGAGATGCGTGTCAATTAGGCCATGTCATGCTTATGAATACATGGTAGATGAGGCAGGTGGATATGAAAATGTGGGATTCTTACAGAAAGATCTCTATAACAAGCTGGATGAACGACGACGAAATACTGCGTTCGAGAATGACACTCAAACAACACTTGCTTACATGAATGCTAGAAAAGAACAGGACCCGGATTTCTTCTGTAGGTTCAATGAGGATGAGGAAAACAGGTTAGCAAACTTGTTCTGGAGGGATACCCATTCTTTGATCGATTACAAATTTACAATCGCTTTGGGGATGTCTTGA

Protein Analysis

229

Amino Acids

26.94

Weight (kDa)

9.37

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 14 - 104 1.9e-15 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
AarI CACCTGC 1 cut(s) 431
Acc36I ACCTGC 1 cut(s) 431
AclWI GGATC 1 cut(s) 333
AcsI RAATTY 1 cut(s) 662
AfaI GTAC 1 cut(s) 56
AgsI TTSAA 3 cut(s) 19, 51, 595
AjnI CCWGG 1 cut(s) 366
AleI CACNNNNGTG 1 cut(s) 166
AluBI AGCT 1 cut(s) 490
AluI AGCT 1 cut(s) 490
Alw21I GWGCWC 2 cut(s) 143, 297
Alw44I GTGCAC 1 cut(s) 293
AlwI GGATC 1 cut(s) 333
Ama87I CYCGRG 2 cut(s) 213, 259
AoxI GGCC 1 cut(s) 404
ApaLI GTGCAC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 662
AspS9I GGNCC 2 cut(s) 190, 571
AsuC2I CCSGG 1 cut(s) 575
AsuHPI GGTGA 2 cut(s) 153, 166
AvaI CYCGRG 2 cut(s) 213, 259
AvaII GGWCC 2 cut(s) 190, 571
BaeGI GKGCMC 2 cut(s) 297, 379
BauI CACGAG 1 cut(s) 372
Bbv12I GWGCWC 2 cut(s) 143, 297
BccI CCATC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 368
BciVI GTATCC 2 cut(s) 71, 631
BcnI CCSGG 1 cut(s) 575
BfaI CTAG 1 cut(s) 558
BfmI CTRYAG 1 cut(s) 586
BfuAI ACCTGC 1 cut(s) 431
BfuI GTATCC 2 cut(s) 71, 631
BglII AGATCT 1 cut(s) 475
BmcAI AGTACT 1 cut(s) 56
Bme1390I CCNGG 2 cut(s) 368, 575
Bme18I GGWCC 2 cut(s) 190, 571
BmeT110I CYCGRG 2 cut(s) 213, 259
BmgT120I GGNCC 2 cut(s) 190, 571
BmiI GGNNCC 2 cut(s) 191, 573
BmrFI CCNGG 2 cut(s) 368, 575
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 2 cut(s) 2, 380
BmuI ACTGGG 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 652
BpuMI CCSGG 1 cut(s) 575
Bsa29I ATCGAT 1 cut(s) 654
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 255, 285
Bse1I ACTGG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 368
BseCI ATCGAT 1 cut(s) 654
BseGI GGATG 3 cut(s) 499, 607, 687
BseNI ACTGG 1 cut(s) 90
BseSI GKGCMC 2 cut(s) 297, 379
BshFI GGCC 1 cut(s) 406
BshVI ATCGAT 1 cut(s) 654
BsiHKAI GWGCWC 2 cut(s) 143, 297
BsiHKCI CYCGRG 2 cut(s) 213, 259
BsiSI CCGG 1 cut(s) 575
BslFI GGGAC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 310
BsmI GAATGC 2 cut(s) 281, 559
BsnI GGCC 1 cut(s) 406
BsoBI CYCGRG 2 cut(s) 213, 259
Bsp1286I GDGCHC 3 cut(s) 143, 297, 379
Bsp143I GATC 4 cut(s) 158, 338, 475, 651
BspANI GGCC 1 cut(s) 406
BspDI ATCGAT 1 cut(s) 654
BspLI GGNNCC 2 cut(s) 191, 573
BspMI ACCTGC 1 cut(s) 431
BspPI GGATC 1 cut(s) 333
BsrI ACTGG 1 cut(s) 90
BssMI GATC 4 cut(s) 158, 338, 475, 651
BssSI CACGAG 1 cut(s) 372
Bst2BI CACGAG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 368
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 3 cut(s) 499, 607, 687
BstKTI GATC 4 cut(s) 161, 341, 478, 654
BstMBI GATC 4 cut(s) 158, 338, 475, 651
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 2 cut(s) 366, 573
BstSFI CTRYAG 1 cut(s) 586
BstSLI GKGCMC 2 cut(s) 297, 379
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
Bsu15I ATCGAT 1 cut(s) 654
BsuI GTATCC 2 cut(s) 71, 631
BsuRI GGCC 1 cut(s) 406
BsuTUI ATCGAT 1 cut(s) 654
BtsCI GGATG 3 cut(s) 499, 607, 687
BveI ACCTGC 1 cut(s) 431
Cfr13I GGNCC 2 cut(s) 190, 571
ClaI ATCGAT 1 cut(s) 654
Csp6I GTAC 1 cut(s) 55
CviAII CATG 5 cut(s) 385, 408, 413, 427, 550
CviJI RGCY 7 cut(s) 35, 172, 258, 371, 383, 406, 490
CviKI_1 RGCY 7 cut(s) 35, 172, 258, 371, 383, 406, 490
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 165
DpnI GATC 4 cut(s) 160, 340, 477, 653
DpnII GATC 4 cut(s) 158, 338, 475, 651
Eco47I GGWCC 2 cut(s) 190, 571
Eco88I CYCGRG 2 cut(s) 213, 259
EcoO109I RGGNCCY 1 cut(s) 571
EcoRII CCWGG 1 cut(s) 366
FaeI CATG 5 cut(s) 388, 411, 416, 430, 553
FaqI GGGAC 1 cut(s) 310
FatI CATG 5 cut(s) 384, 407, 412, 426, 549
FokI GGATG 2 cut(s) 506, 614
FspBI CTAG 1 cut(s) 558
GsuI CTGGAG 1 cut(s) 652
HaeIII GGCC 1 cut(s) 406
HapII CCGG 1 cut(s) 575
Hin1II CATG 5 cut(s) 388, 411, 416, 430, 553
HinfI GANTC 2 cut(s) 323, 462
HpaII CCGG 1 cut(s) 575
HphI GGTGA 2 cut(s) 153, 166
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 2 cut(s) 117, 201
Hpy188III TCNNGA 6 cut(s) 215, 261, 315, 520, 631, 687
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 2 cut(s) 504, 507
HpyAV CCTTC 4 cut(s) 120, 143, 175, 349
HpyCH4V TGCA 2 cut(s) 225, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 1 cut(s) 165
Hsp92II CATG 5 cut(s) 388, 411, 416, 430, 553
Kzo9I GATC 4 cut(s) 158, 338, 475, 651
LpnPI CCDG 9 cut(s) 71, 353, 380, 426, 476, 554, 588, 598, 616
LweI GCATC 2 cut(s) 2, 380
MaeI CTAG 1 cut(s) 558
MalI GATC 4 cut(s) 160, 340, 477, 653
MboI GATC 4 cut(s) 158, 338, 475, 651
MboII GAAGA 2 cut(s) 190, 574
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 3 cut(s) 143, 297, 379
MluCI AATT 3 cut(s) 318, 399, 662
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 6 cut(s) 71, 211, 430, 592, 598, 627
MslI CAYNNNNRTG 2 cut(s) 166, 417
MspI CCGG 1 cut(s) 575
MspR9I CCNGG 2 cut(s) 368, 575
Mva1269I GAATGC 2 cut(s) 281, 559
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 368
NciI CCSGG 1 cut(s) 575
NdeII GATC 4 cut(s) 158, 338, 475, 651
NlaIII CATG 5 cut(s) 388, 411, 416, 430, 553
NlaIV GGNNCC 2 cut(s) 191, 573
NmeAIII GCCGAG 1 cut(s) 61
OliI CACNNNNGTG 1 cut(s) 166
PaqCI CACCTGC 1 cut(s) 431
PctI GAATGC 2 cut(s) 281, 559
PfeI GAWTC 1 cut(s) 462
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PpuMI RGGWCCY 1 cut(s) 571
PsiI TTATAA 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 571
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 2 cut(s) 191, 573
PspPI GGNCC 2 cut(s) 190, 571
PspPPI RGGWCCY 1 cut(s) 571
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 166, 417
Sau3AI GATC 4 cut(s) 158, 338, 475, 651
Sau96I GGNCC 2 cut(s) 190, 571
ScaI AGTACT 1 cut(s) 56
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 368, 575
SduI GDGCHC 3 cut(s) 143, 297, 379
SetI ASST 6 cut(s) 166, 369, 445, 492, 593, 617
SfaNI GCATC 2 cut(s) 2, 380
SfcI CTRYAG 1 cut(s) 586
SinI GGWCC 2 cut(s) 190, 571
SmiMI CAYNNNNRTG 2 cut(s) 166, 417
Sse9I AATT 3 cut(s) 318, 399, 662
SspMI CTAG 1 cut(s) 558
StyD4I CCNGG 2 cut(s) 366, 573
TaqI TCGA 3 cut(s) 316, 519, 654
TasI AATT 3 cut(s) 318, 399, 662
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 1 cut(s) 462
TspDTI ATGAA 6 cut(s) 17, 45, 435, 465, 510, 566
TspGWI ACGGA 1 cut(s) 182
VneI GTGCAC 1 cut(s) 293
VpaK11BI GGWCC 2 cut(s) 190, 571
XapI RAATTY 1 cut(s) 662
XspI CTAG 1 cut(s) 558
ZrmI AGTACT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.