Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004408

Physical Location & Seq

Genomic Coordinates Forward (+)

24286525 .. 24289692

Gene Structure 3168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G210100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCCGTGGTACCTACCCACCCTGCTCTCAGACACCTGGGAACCAGGGCCTCACGTGACCCTCCAACTTCACCCGAACTGAAAATTTCGATCCTGAGCTTCAGGCTCAGAGGGCCAACTCGCTACCCATCGTCTTCAAATCCTCTGGTCTTTTCCCGTAAATTTGATGAAATTCGGCGTCCAATTAGGGCCGTAAATGCTCTGAGCCAAGAAGGGTCGTTGCAAGAGCTCGATGATACGCCGGTCTCGGTGGCGCTCGTGCCGATTTCCGGCGAGACCCAGTTCGACCGGGTCATGGCCCAAGCGCAGCAGCTGGAGGAATCGGTCGTTGTCGTTTGGATGGCAAGCTGGTGCAGAAAATGTATATATTTGAAACCAAAATTGGAGAAGCTGGCAGCTGAGTATTATCCAAGATTGTGGTTCTATTCTGTTGATGTCAATTCAGTTCCTCACAAGCTTGTTGCTCGTGCTGAGGTCACTAAGATGCCAACTATACAGCTGTGGAAAGACGGCAAGAAACAAGCTGAGGTGATCGGTGGTCACAAAGCATATTTAGTCGTTAATGAAGTTCGTGACATGATTGAAAATGAGGATGACACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

201

Amino Acids

22.7

Weight (kDa)

8.85

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04260
fragaria_vesca	FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880
malus_domestica	MD01G1104800.v1.1
prunus_persica	Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1
pyrus_communis	pycom01g13140
rosa_chinensis	RchiOBHm_Chr1g0362831 RchiOBHm_Chr5g0036621 RchiOBHm_Chr7g0239631
rosa_laevigata	RLG00000027619
rosa_multiflora	Rmu_sc0005055.1_g000016 Rmu_sc0006739.1_g000005 Rmu_sc0035177.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293730 Rroxscaffold_5G00347900
rosa_rugosa	Rorug01G0301700 Rorug01G0301800 Rorug06G0050200
rosa_samantha	Rh1AG310600 Rh1BG029700 Rh1BG273700 Rh1CG290900 Rh1DG304500 Rh2CG160200 Rh5CG416200
rosa_wichuraiana	Rw1G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	10
AccB1I	GGYRCC	1 cut(s)	10
AclWI	GGATC	1 cut(s)	85
AcsI	RAATTY	3 cut(s)	84, 161, 171
AcuI	CTGAAG	1 cut(s)	85
AcvI	CACGTG	2 cut(s)	56, 600
AcyI	GRCGYC	1 cut(s)	178
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	269, 295
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	3 cut(s)	138, 373, 584
AjnI	CCWGG	2 cut(s)	36, 44
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	9 cut(s)	99, 229, 313, 348, 391, 398, 457, 499, 524
AluI	AGCT	9 cut(s)	99, 229, 313, 348, 391, 398, 457, 499, 524
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	2 cut(s)	250, 269
AlwI	GGATC	1 cut(s)	85
AlwNI	CAGNNNCTG	1 cut(s)	313
AoxI	GGCC	4 cut(s)	48, 113, 189, 297
ApeKI	GCWGC	3 cut(s)	307, 310, 395
ApoI	RAATTY	3 cut(s)	84, 161, 171
Asp718I	GGTACC	1 cut(s)	10
AspLEI	GCGC	2 cut(s)	256, 307
AspS9I	GGNCC	4 cut(s)	48, 113, 189, 298
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	63, 541
BaeI	ACNNNNGTAYC	2 cut(s)	228, 261
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	2 cut(s)	257, 465
BbrPI	CACGTG	2 cut(s)	56, 600
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	231
BbvCI	CCTCAGC	2 cut(s)	471, 525
BbvI	GCAGC	3 cut(s)	319, 322, 407
BccI	CCATC	2 cut(s)	136, 334
BceAI	ACGGC	2 cut(s)	176, 526
BciT130I	CCWGG	2 cut(s)	38, 46
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	2 cut(s)	250, 269
BfoI	RGCGCY	1 cut(s)	257
BisI	GCNGC	3 cut(s)	308, 311, 396
BlsI	GCNGC	3 cut(s)	309, 312, 397
Bme1390I	CCNGG	3 cut(s)	38, 46, 290
BmgT120I	GGNCC	4 cut(s)	48, 113, 189, 298
BmiI	GGNNCC	2 cut(s)	12, 43
BmrFI	CCNGG	3 cut(s)	38, 46, 290
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	474
BmuI	ACTGGG	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	335
Bpu10I	CCTNAGC	3 cut(s)	95, 471, 525
BpuMI	CCSGG	1 cut(s)	290
BsaAI	YACGTR	2 cut(s)	56, 600
BsaHI	GRCGYC	1 cut(s)	178
BsaI	GGTCTC	2 cut(s)	250, 269
BsaJI	CCNNGG	3 cut(s)	6, 37, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 295
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	38, 46
BseDI	CCNNGG	3 cut(s)	6, 37, 45
BseGI	GGATG	2 cut(s)	345, 598
BseLI	CCNNNNNNNGG	2 cut(s)	269, 295
BseMII	CTCAG	7 cut(s)	43, 86, 121, 194, 390, 462, 516
BseNI	ACTGG	1 cut(s)	280
BseXI	GCAGC	3 cut(s)	319, 322, 407
BsgI	GTGCAG	1 cut(s)	373
Bsh1285I	CGRYCG	2 cut(s)	289, 327
BshFI	GGCC	4 cut(s)	50, 115, 191, 299
BshNI	GGYRCC	1 cut(s)	10
BsiEI	CGRYCG	2 cut(s)	289, 327
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	3 cut(s)	242, 270, 289
BslI	CCNNNNNNNGG	2 cut(s)	269, 295
BsmAI	GTCTC	2 cut(s)	250, 269
BsnI	GGCC	4 cut(s)	50, 115, 191, 299
Bso31I	GGTCTC	2 cut(s)	250, 269
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	90, 531
BspANI	GGCC	4 cut(s)	50, 115, 191, 299
BspCNI	CTCAG	7 cut(s)	42, 87, 120, 195, 391, 463, 517
BspLI	GGNNCC	2 cut(s)	12, 43
BspPI	GGATC	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	10
BspTNI	GGTCTC	2 cut(s)	250, 269
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	6, 37, 45
BssMI	GATC	2 cut(s)	90, 531
BssNI	GRCGYC	1 cut(s)	178
BssSI	CACGAG	2 cut(s)	257, 465
Bst2BI	CACGAG	2 cut(s)	257, 465
Bst2UI	CCWGG	2 cut(s)	38, 46
BstACI	GRCGYC	1 cut(s)	178
BstBAI	YACGTR	2 cut(s)	56, 600
BstC8I	GCNNGC	2 cut(s)	346, 393
BstDEI	CTNAG	8 cut(s)	29, 95, 107, 203, 399, 471, 480, 525
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	345, 598
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	2 cut(s)	256, 307
BstKTI	GATC	2 cut(s)	93, 534
BstMAI	GTCTC	2 cut(s)	250, 269
BstMBI	GATC	2 cut(s)	90, 531
BstMCI	CGRYCG	2 cut(s)	289, 327
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 197
BstNI	CCWGG	2 cut(s)	38, 46
BstSCI	CCNGG	3 cut(s)	36, 44, 288
BstV1I	GCAGC	3 cut(s)	319, 322, 407
BstV2I	GAAGAC	1 cut(s)	126
BstXI	CCANNNNNNTGG	1 cut(s)	417
BsuRI	GGCC	4 cut(s)	50, 115, 191, 299
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	345, 598
Cac8I	GCNNGC	2 cut(s)	346, 393
CaiI	CAGNNNCTG	1 cut(s)	313
CfoI	GCGC	2 cut(s)	256, 307
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	4 cut(s)	48, 113, 189, 298
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	2 cut(s)	295, 577
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	8 cut(s)	29, 95, 107, 203, 399, 471, 480, 525
DpnI	GATC	2 cut(s)	92, 533
DpnII	GATC	2 cut(s)	90, 531
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	2 cut(s)	250, 269
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	85
Eco72I	CACGTG	2 cut(s)	56, 600
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRII	CCWGG	2 cut(s)	36, 44
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	2 cut(s)	298, 580
FaiI	YATR	6 cut(s)	296, 365, 367, 494, 550, 578
FatI	CATG	2 cut(s)	294, 576
Fnu4HI	GCNGC	3 cut(s)	308, 311, 396
FokI	GGATG	1 cut(s)	352
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	308, 311, 396
GlaI	GCGC	2 cut(s)	255, 306
GluI	GCNGC	3 cut(s)	308, 311, 396
GsuI	CTGGAG	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	4 cut(s)	50, 115, 191, 299
HapII	CCGG	3 cut(s)	242, 270, 289
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	2 cut(s)	256, 307
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	298, 580
Hin6I	GCGC	2 cut(s)	254, 305
HinP1I	GCGC	2 cut(s)	254, 305
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	3 cut(s)	242, 270, 289
HphI	GGTGA	2 cut(s)	63, 541
Hpy188I	TCNGA	3 cut(s)	32, 110, 204
Hpy188III	TCNNGA	2 cut(s)	94, 572
HpyAV	CCTTC	1 cut(s)	206
HpyCH4IV	ACGT	2 cut(s)	55, 599
HpyCH4V	TGCA	2 cut(s)	223, 354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 197
HpyF3I	CTNAG	8 cut(s)	29, 95, 107, 203, 399, 471, 480, 525
HpySE526I	ACGT	2 cut(s)	55, 599
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	298, 580
HspAI	GCGC	2 cut(s)	254, 305
KpnI	GGTACC	1 cut(s)	14
Kzo9I	GATC	2 cut(s)	90, 531
Lsp1109I	GCAGC	3 cut(s)	319, 322, 407
LweI	GCATC	1 cut(s)	474
MaeII	ACGT	2 cut(s)	55, 599
MaeIII	GTNAC	4 cut(s)	56, 475, 539, 572
MalI	GATC	2 cut(s)	92, 533
MboI	GATC	2 cut(s)	90, 531
MboII	GAAGA	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	6 cut(s)	84, 161, 171, 183, 380, 439
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	9 cut(s)	61, 72, 104, 153, 310, 459, 466, 520, 583
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	482
MspA1I	CMGCKG	3 cut(s)	313, 398, 499
MspI	CCGG	3 cut(s)	242, 270, 289
MspR9I	CCNGG	3 cut(s)	38, 46, 290
MvaI	CCWGG	2 cut(s)	38, 46
MwoI	GCNNNNNNNGC	2 cut(s)	112, 197
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	2 cut(s)	90, 531
NlaIII	CATG	2 cut(s)	298, 580
NlaIV	GGNNCC	2 cut(s)	12, 43
NmuCI	GTSAC	4 cut(s)	56, 475, 539, 572
PfeI	GAWTC	1 cut(s)	320
PflFI	GACNNNGTC	1 cut(s)	290
PkrI	GCNGC	3 cut(s)	309, 312, 397
PmaCI	CACGTG	2 cut(s)	56, 600
PmlI	CACGTG	2 cut(s)	56, 600
Ppu21I	YACGTR	2 cut(s)	56, 600
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	36, 44
PspCI	CACGTG	2 cut(s)	56, 600
PspGI	CCWGG	2 cut(s)	36, 44
PspN4I	GGNNCC	2 cut(s)	12, 43
PspPI	GGNCC	4 cut(s)	48, 113, 189, 298
PstNI	CAGNNNCTG	1 cut(s)	313
PsyI	GACNNNGTC	1 cut(s)	290
PvuII	CAGCTG	3 cut(s)	313, 398, 499
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	482
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	3 cut(s)	308, 311, 396
Sau3AI	GATC	2 cut(s)	90, 531
Sau96I	GGNCC	4 cut(s)	48, 113, 189, 298
ScrFI	CCNGG	3 cut(s)	38, 46, 290
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	482
Sse9I	AATT	6 cut(s)	84, 161, 171, 183, 380, 439
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	3 cut(s)	36, 44, 288
TaiI	ACGT	2 cut(s)	58, 602
TaqI	TCGA	3 cut(s)	89, 231, 285
TaqII	GACCGA	1 cut(s)	313
TasI	AATT	6 cut(s)	84, 161, 171, 183, 380, 439
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TseFI	GTSAC	4 cut(s)	56, 475, 539, 572
TseI	GCWGC	3 cut(s)	307, 310, 395
Tsp45I	GTSAC	4 cut(s)	56, 475, 539, 572
TspDTI	ATGAA	2 cut(s)	183, 579
Tth111I	GACNNNGTC	1 cut(s)	290
XapI	RAATTY	3 cut(s)	84, 161, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.