Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004408

Physical Location & Seq

Genomic Coordinates Reverse (-)

19600020 .. 19618217

Gene Structure 18198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCGCATCCGGACGTATGGTCGAATGCGATCTTCGAAGTCAATAGCTAGCATGGACCCTAGCACTTTCAACCACCAATATAAAGGGGGTCTCACTACCACATTAGGGGGGAATTGTCGTAATCAAACTAATCACCCACTGAGCTTCTCGAATGGAAGGCTAGTGAAATTAGTGAAGGCAGCGATGTCACCAGTATTGTGTTCTCAAGGTAAGATGGCAAGCTGGTGCAGGAAATGCATATATTTGAAACCGAAATTGGAGAAGTTAGCAGTAGAGTACTATCGAAGGCAACATTGGAAGACAAAATGCTTTGGAGCAATATGTGTATCGGCCTTTGATGTTCAAGTAGATAGGGCATATATAGAAACCGACGACAAACGGTGGTCGTCCGATCTACGATCAAAGGTCGCCGCTCGCCCCACGCCCATCGCTTTCCGCGACTACGGTAGTAGAGATGAGGCCTTCTGTGATTCCAAGCCTTGGTTGGACTCGGATTGTGAAGATGACTTCTACGGTGTCAATGGCAATTATTCTAGGAATCTCCTTGATAATTGCAGCATCAATAACCTACCAAAAACGCACATGAAATCAGTCCCAAGAAGATTGTTGGCCAATCTACCTTGTTTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

24.0

Weight (kDa)

9.46

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04260
fragaria_vesca	FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880
malus_domestica	MD01G1104800.v1.1
prunus_persica	Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1
pyrus_communis	pycom01g13140
rosa_chinensis	RchiOBHm_Chr1g0362831 RchiOBHm_Chr5g0036621 RchiOBHm_Chr7g0239631
rosa_laevigata	RLG00000027619
rosa_multiflora	Rmu_sc0005055.1_g000016 Rmu_sc0006739.1_g000005 Rmu_sc0035177.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293730 Rroxscaffold_5G00347900
rosa_rugosa	Rorug01G0301700 Rorug01G0301800 Rorug06G0050200
rosa_samantha	Rh1AG310600 Rh1BG029700 Rh1BG273700 Rh1CG290900 Rh1DG304500 Rh2CG160200 Rh5CG416200
rosa_wichuraiana	Rw1G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	480
AccBSI	CCGCTC	1 cut(s)	413
AccII	CGCG	1 cut(s)	438
AccIII	TCCGGA	1 cut(s)	9
AciI	CCGC	2 cut(s)	411, 436
AcoI	YGGCCR	1 cut(s)	609
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	105, 480
AgsI	TTSAA	3 cut(s)	70, 247, 344
AhdI	GACNNNNNGTC	1 cut(s)	18
AjuI	GAANNNNNNNTTGG	4 cut(s)	239, 271, 277, 309
AluBI	AGCT	3 cut(s)	47, 144, 222
AluI	AGCT	3 cut(s)	47, 144, 222
Alw26I	GTCTC	1 cut(s)	95
Aor13HI	TCCGGA	1 cut(s)	9
AoxI	GGCC	3 cut(s)	330, 459, 609
ApeKI	GCWGC	2 cut(s)	179, 555
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	125, 180
AsuII	TTCGAA	1 cut(s)	35
AsuNHI	GCTAGC	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	611
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	191, 567
BccI	CCATC	2 cut(s)	208, 434
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	5 cut(s)	48, 60, 161, 534, 631
BisI	GCNGC	3 cut(s)	180, 411, 556
BlsI	GCNGC	3 cut(s)	181, 412, 557
BmcAI	AGTACT	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	55
BmeRI	GACNNNNNGTC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	57
BmsI	GCATC	2 cut(s)	15, 567
BmtI	GCTAGC	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	305
Bpu14I	TTCGAA	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	479
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 480
Bse1I	ACTGG	1 cut(s)	191
BseAI	TCCGGA	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	1 cut(s)	6
BseLI	CCNNNNNNNGG	2 cut(s)	105, 480
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	191, 567
BsgI	GTGCAG	1 cut(s)	247
Bsh1236I	CGCG	1 cut(s)	438
BshFI	GGCC	3 cut(s)	332, 461, 611
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	2 cut(s)	105, 480
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	578
BsmI	GAATGC	1 cut(s)	30
BsnI	GGCC	3 cut(s)	332, 461, 611
Bso31I	GGTCTC	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	35
Bsp13I	TCCGGA	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	29, 391, 398
BspACI	CCGC	2 cut(s)	411, 436
BspANI	GGCC	3 cut(s)	332, 461, 611
BspCNI	CTCAG	1 cut(s)	132
BspEI	TCCGGA	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	57
BspOI	GCTAGC	1 cut(s)	51
BspT104I	TTCGAA	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	3 cut(s)	29, 391, 398
BssT1I	CCWWGG	1 cut(s)	479
Bst4CI	ACNGT	3 cut(s)	381, 446, 515
BstAPI	GCANNNNNTGC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	35
BstC8I	GCNNGC	3 cut(s)	49, 220, 415
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	6
BstFNI	CGCG	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	32, 394, 401
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	3 cut(s)	29, 391, 398
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	191, 567
BstV2I	GAAGAC	1 cut(s)	305
BsuRI	GGCC	3 cut(s)	332, 461, 611
BtgZI	GCGATG	2 cut(s)	197, 412
BtsCI	GGATG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	3 cut(s)	49, 220, 415
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	2 cut(s)	52, 583
CviJI	RGCY	8 cut(s)	47, 144, 160, 222, 332, 461, 478, 611
CviKI_1	RGCY	8 cut(s)	47, 144, 160, 222, 332, 461, 478, 611
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	3 cut(s)	31, 393, 400
DpnII	GATC	3 cut(s)	29, 391, 398
DriI	GACNNNNNGTC	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	609
Eam1105I	GACNNNNNGTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	479
Eco147I	AGGCCT	1 cut(s)	461
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	479
EcoT22I	ATGCAT	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	479
FaeI	CATG	2 cut(s)	55, 586
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	2 cut(s)	51, 582
Fnu4HI	GCNGC	3 cut(s)	180, 411, 556
Fsp4HI	GCNGC	3 cut(s)	180, 411, 556
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	5 cut(s)	48, 60, 161, 534, 631
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	3 cut(s)	180, 411, 556
HaeIII	GGCC	3 cut(s)	332, 461, 611
HapII	CCGG	1 cut(s)	10
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	55, 586
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	3 cut(s)	470, 488, 538
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	2 cut(s)	125, 180
Hpy188I	TCNGA	2 cut(s)	391, 493
Hpy188III	TCNNGA	2 cut(s)	10, 148
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	4 cut(s)	150, 169, 279, 472
HpyCH4III	ACNGT	3 cut(s)	381, 446, 515
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	228, 237, 555
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	55, 586
HspAI	GCGC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	29, 391, 398
LmnI	GCTCC	1 cut(s)	314
LpnPI	CCDG	4 cut(s)	23, 204, 208, 214
Lsp1109I	GCAGC	2 cut(s)	191, 567
LweI	GCATC	2 cut(s)	15, 567
MaeI	CTAG	5 cut(s)	48, 60, 161, 534, 631
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	3 cut(s)	31, 393, 400
MbiI	CCGCTC	1 cut(s)	413
MboI	GATC	3 cut(s)	29, 391, 398
MboII	GAAGA	4 cut(s)	24, 310, 512, 612
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	5 cut(s)	112, 167, 254, 526, 550
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	1 cut(s)	451
Mox20I	TGGCCA	1 cut(s)	611
Mph1103I	ATGCAT	1 cut(s)	239
MroI	TCCGGA	1 cut(s)	9
MscI	TGGCCA	1 cut(s)	611
Msp20I	TGGCCA	1 cut(s)	611
MspI	CCGG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	30
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	234
NdeII	GATC	3 cut(s)	29, 391, 398
NheI	GCTAGC	1 cut(s)	47
NlaIII	CATG	2 cut(s)	55, 586
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	186
NsbI	TGCGCA	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	239
NspV	TTCGAA	1 cut(s)	35
PceI	AGGCCT	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PctI	GAATGC	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	470, 538
PflMI	CCANNNNNTGG	1 cut(s)	480
PkrI	GCNGC	3 cut(s)	181, 412, 557
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	55
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SatI	GCNGC	3 cut(s)	180, 411, 556
Sau3AI	GATC	3 cut(s)	29, 391, 398
Sau96I	GGNCC	1 cut(s)	55
ScaI	AGTACT	1 cut(s)	278
SchI	GAGTC	1 cut(s)	482
SetI	ASST	8 cut(s)	17, 49, 146, 211, 224, 408, 570, 622
SfaNI	GCATC	2 cut(s)	15, 567
SfuI	TTCGAA	1 cut(s)	35
SinI	GGWCC	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	5 cut(s)	112, 167, 254, 526, 550
SseBI	AGGCCT	1 cut(s)	461
SsiI	CCGC	2 cut(s)	411, 436
SspMI	CTAG	5 cut(s)	48, 60, 161, 534, 631
StuI	AGGCCT	1 cut(s)	461
StyI	CCWWGG	1 cut(s)	479
TaaI	ACNGT	3 cut(s)	381, 446, 515
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	4 cut(s)	22, 35, 149, 283
TasI	AATT	5 cut(s)	112, 167, 254, 526, 550
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	2 cut(s)	470, 538
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	2 cut(s)	179, 555
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	599
TspRI	CASTG	1 cut(s)	144
Van91I	CCANNNNNTGG	1 cut(s)	480
VpaK11BI	GGWCC	1 cut(s)	55
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XspI	CTAG	5 cut(s)	48, 60, 161, 534, 631
ZrmI	AGTACT	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.