Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004408

Physical Location & Seq

Genomic Coordinates Forward (+)

13705881 .. 13708138

Gene Structure 2258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCCGTAGTACCGACGACGCGCCCTACTCTCCGGCACCCGAGAGCCAGTGCCTCAAGTGACGGGTCACGTGACCGGCCAACAGCTTCGCCCAAAGTTTCAATTTTGGCCTTCAGACCCAGAGCGCCAAGCTCTTCAAATCCCCCGGTGTTCTCCCGTAAATTTGATGAAATCCGGGGGCGGATTACTGCGCTGAGTGCTTTGAGCCAGGAAGGGTCGCTGCAGGAGGTGGATGATTCACCGGTCACAGTGGCGCTTGCGCCCATTTCCAGCGAGACCCAGTTCGATCGGGTGGTTGCCCAGGCCCAGCAGCTCGACGAATCGTTTGTTGTCGTTTGGGTGGCAACCTGGTGCAGAAAATGTATATATTTGAAGCCAAAATTGGAGAAGCTGGCAGCTGAGTACTATCCAAGATTGAAGTTCTATTCTGTTGATGTCAACTCAGTTCCACACAAACTCGTTAAACGTGCTGATGTCACTAAGATGCCAACTATACAGGTACGCTCGCACATCAGTGAGACATCTTTGAGGAACTTGGGGTGTTCCTTCTTCCCGTTTTCTGTTTATTCACCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

193

Amino Acids

21.45

Weight (kDa)

9.71

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04260
fragaria_vesca	FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880
malus_domestica	MD01G1104800.v1.1
prunus_persica	Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1
pyrus_communis	pycom01g13140
rosa_chinensis	RchiOBHm_Chr1g0362831 RchiOBHm_Chr5g0036621 RchiOBHm_Chr7g0239631
rosa_laevigata	RLG00000027619
rosa_multiflora	Rmu_sc0005055.1_g000016 Rmu_sc0006739.1_g000005 Rmu_sc0035177.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293730 Rroxscaffold_5G00347900
rosa_rugosa	Rorug01G0301700 Rorug01G0301800 Rorug06G0050200
rosa_samantha	Rh1AG310600 Rh1BG029700 Rh1BG273700 Rh1CG290900 Rh1DG304500 Rh2CG160200 Rh5CG416200
rosa_wichuraiana	Rw1G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	36
AccII	CGCG	1 cut(s)	22
AciI	CCGC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	97
AcvI	CACGTG	1 cut(s)	71
AfaI	GTAC	3 cut(s)	12, 404, 501
AgeI	ACCGGT	1 cut(s)	241
AgsI	TTSAA	4 cut(s)	102, 138, 373, 418
AjnI	CCWGG	3 cut(s)	207, 300, 347
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AleI	CACNNNNGTG	1 cut(s)	513
AluBI	AGCT	5 cut(s)	86, 132, 313, 391, 398
AluI	AGCT	5 cut(s)	86, 132, 313, 391, 398
Alw26I	GTCTC	2 cut(s)	269, 512
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	3 cut(s)	77, 108, 303
ApeKI	GCWGC	3 cut(s)	220, 310, 395
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	308, 340
AsiGI	ACCGGT	1 cut(s)	241
AspLEI	GCGC	5 cut(s)	24, 127, 193, 256, 262
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	2 cut(s)	146, 176
AsuHPI	GGTGA	2 cut(s)	231, 561
AvaI	CYCGRG	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	36
BbrPI	CACGTG	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	207, 322, 407
BciT130I	CCWGG	3 cut(s)	209, 302, 349
BcnI	CCSGG	2 cut(s)	146, 176
BcoDI	GTCTC	2 cut(s)	269, 512
BfmI	CTRYAG	1 cut(s)	221
BfoI	RGCGCY	2 cut(s)	128, 257
BisI	GCNGC	3 cut(s)	221, 311, 396
BlsI	GCNGC	3 cut(s)	222, 312, 397
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	5 cut(s)	146, 176, 209, 302, 349
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	5 cut(s)	146, 176, 209, 302, 349
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	474
BmuI	ACTGGG	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	40
BpuMI	CCSGG	2 cut(s)	146, 176
BsaAI	YACGTR	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	144, 175, 300
BsaWI	WCCGGW	1 cut(s)	241
Bse118I	RCCGGY	2 cut(s)	75, 241
Bse1I	ACTGG	2 cut(s)	48, 280
BseBI	CCWGG	3 cut(s)	209, 302, 349
BseDI	CCNNGG	3 cut(s)	144, 175, 300
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	3 cut(s)	185, 390, 456
BseNI	ACTGG	2 cut(s)	48, 280
BseXI	GCAGC	3 cut(s)	207, 322, 407
BseYI	CCCAGC	1 cut(s)	306
BsgI	GTGCAG	1 cut(s)	373
Bsh1236I	CGCG	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	3 cut(s)	79, 110, 305
BshNI	GGYRCC	1 cut(s)	36
BshTI	ACCGGT	1 cut(s)	241
BsiEI	CGRYCG	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	5 cut(s)	34, 76, 146, 175, 242
BsmAI	GTCTC	2 cut(s)	269, 512
BsnI	GGCC	3 cut(s)	79, 110, 305
Bso31I	GGTCTC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	3 cut(s)	79, 110, 305
BspCNI	CTCAG	3 cut(s)	186, 391, 455
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	38
BspMAI	CTGCAG	1 cut(s)	225
BspQI	GCTCTTC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	269
BsrFI	RCCGGY	2 cut(s)	75, 241
BsrI	ACTGG	2 cut(s)	48, 280
BssAI	RCCGGY	2 cut(s)	75, 241
BssECI	CCNNGG	3 cut(s)	144, 175, 300
BssMI	GATC	1 cut(s)	286
Bst2UI	CCWGG	3 cut(s)	209, 302, 349
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	71
BstC8I	GCNNGC	3 cut(s)	258, 393, 506
BstDEI	CTNAG	4 cut(s)	194, 399, 442, 480
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	22
BstH2I	RGCGCY	2 cut(s)	128, 257
BstHHI	GCGC	5 cut(s)	24, 127, 193, 256, 262
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	2 cut(s)	269, 512
BstMBI	GATC	1 cut(s)	286
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	3 cut(s)	209, 302, 349
BstSCI	CCNGG	5 cut(s)	144, 174, 207, 300, 347
BstSFI	CTRYAG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	3 cut(s)	207, 322, 407
BsuRI	GGCC	3 cut(s)	79, 110, 305
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	3 cut(s)	55, 255, 520
Cac8I	GCNNGC	3 cut(s)	258, 393, 506
CfoI	GCGC	5 cut(s)	24, 127, 193, 256, 262
Cfr10I	RCCGGY	2 cut(s)	75, 241
Cfr13I	GGNCC	1 cut(s)	304
CseI	GACGC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	347
Csp6I	GTAC	3 cut(s)	11, 403, 500
CspAI	ACCGGT	1 cut(s)	241
CviQI	GTAC	3 cut(s)	11, 403, 500
DdeI	CTNAG	4 cut(s)	194, 399, 442, 480
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	97
Eco72I	CACGTG	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	40
EcoRII	CCWGG	3 cut(s)	207, 300, 347
FaiI	YATR	3 cut(s)	365, 367, 494
Fnu4HI	GCNGC	3 cut(s)	221, 311, 396
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	3 cut(s)	221, 311, 396
GlaI	GCGC	5 cut(s)	23, 126, 192, 255, 261
GluI	GCNGC	3 cut(s)	221, 311, 396
GsaI	CCCAGC	1 cut(s)	310
HaeII	RGCGCY	2 cut(s)	128, 257
HaeIII	GGCC	3 cut(s)	79, 110, 305
HapII	CCGG	5 cut(s)	34, 76, 146, 175, 242
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	5 cut(s)	24, 127, 193, 256, 262
Hin6I	GCGC	5 cut(s)	22, 125, 191, 254, 260
HinP1I	GCGC	5 cut(s)	22, 125, 191, 254, 260
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	2 cut(s)	236, 320
HpaII	CCGG	5 cut(s)	34, 76, 146, 175, 242
HphI	GGTGA	2 cut(s)	231, 561
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	439
Hpy99I	CGWCG	3 cut(s)	19, 22, 320
HpyAV	CCTTC	3 cut(s)	121, 206, 556
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	2 cut(s)	70, 466
HpyCH4V	TGCA	2 cut(s)	223, 354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	4 cut(s)	194, 399, 442, 480
HpySE526I	ACGT	2 cut(s)	70, 466
HspAI	GCGC	5 cut(s)	22, 125, 191, 254, 260
Kzo9I	GATC	1 cut(s)	286
LguI	GCTCTTC	1 cut(s)	139
Lsp1109I	GCAGC	3 cut(s)	207, 322, 407
LweI	GCATC	1 cut(s)	474
MabI	ACCWGGT	1 cut(s)	347
MaeII	ACGT	2 cut(s)	70, 466
MaeIII	GTNAC	5 cut(s)	59, 66, 71, 244, 475
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	2 cut(s)	126, 541
MluCI	AATT	3 cut(s)	102, 161, 380
MnlI	CCTC	3 cut(s)	64, 220, 522
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	2 cut(s)	482, 513
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	5 cut(s)	34, 76, 146, 175, 242
MspR9I	CCNGG	5 cut(s)	146, 176, 209, 302, 349
MvaI	CCWGG	3 cut(s)	209, 302, 349
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	2 cut(s)	146, 176
NdeII	GATC	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	5 cut(s)	59, 66, 71, 244, 475
OliI	CACNNNNGTG	1 cut(s)	513
PciSI	GCTCTTC	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	236, 320
PinAI	ACCGGT	1 cut(s)	241
PkrI	GCNGC	3 cut(s)	222, 312, 397
Ple19I	CGATCG	1 cut(s)	289
PmaCI	CACGTG	1 cut(s)	71
PmlI	CACGTG	1 cut(s)	71
Ppu21I	YACGTR	1 cut(s)	71
Psp6I	CCWGG	3 cut(s)	207, 300, 347
PspCI	CACGTG	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	306
PspGI	CCWGG	3 cut(s)	207, 300, 347
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	225
PvuI	CGATCG	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	3 cut(s)	12, 404, 501
RsaNI	GTAC	3 cut(s)	11, 403, 500
RseI	CAYNNNNRTG	2 cut(s)	482, 513
SapI	GCTCTTC	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	3 cut(s)	221, 311, 396
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	1 cut(s)	304
ScaI	AGTACT	1 cut(s)	404
ScrFI	CCNGG	5 cut(s)	146, 176, 209, 302, 349
SexAI	ACCWGGT	1 cut(s)	347
SfaNI	GCATC	1 cut(s)	474
SfcI	CTRYAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	482, 513
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	3 cut(s)	102, 161, 380
SsiI	CCGC	1 cut(s)	181
StyD4I	CCNGG	5 cut(s)	144, 174, 207, 300, 347
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	2 cut(s)	73, 469
TaqI	TCGA	2 cut(s)	285, 315
TasI	AATT	3 cut(s)	102, 161, 380
TatI	WGTACW	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	236, 320
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	3 cut(s)	55, 255, 520
TseFI	GTSAC	5 cut(s)	59, 66, 71, 244, 475
TseI	GCWGC	3 cut(s)	220, 310, 395
Tsp45I	GTSAC	5 cut(s)	59, 66, 71, 244, 475
TspDTI	ATGAA	1 cut(s)	183
TspRI	CASTG	3 cut(s)	55, 255, 520
XapI	RAATTY	1 cut(s)	161
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.