Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001812

Physical Location & Seq

Genomic Coordinates Forward (+)

1327093 .. 1330151

Gene Structure 3059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGACCTAAGGGTTCTGCTTTAATATGTGGCTATACCACTTATCATCGTTTGCTTGAGTCTAGTTTGGCGCAACTGAAGAAAAAAGAGGATTGTCTTGTTTGTCCTACTGGGTTTGCTGCCAATATGGCTGCAATGGTTGCAATTGGAAGTGTTGCTTCTCTTTTGGCCGCTAGCGGGAAACCTCTGAAGAATGAAAAAGTTGCCATCTTTTCTGATGCGCTGAATCATGCATCAATTATTGATGGTGTCCGTCTTGCTGAACGACAAGGAAATGTTGAAGTTTTTGTTTATCGACACTGTGACATGTATCACCTTAATTCGTTATTATCAAATTGCAAAATGAAGAGGAAGGTCGTGGTGACTGATAGCTTATTTAGTATGGACGGTGACTTTGCACCAATGGAAGAGCTCTCTCAGCTTCGGAAGAAGTATGGCTTCCTTCTAGTTATTGATGATGCTCATGGAACATTTGTCTGTGGAGAAAACGGTGGTGGCGTGGCTGAGGAATTTAACTGTGAAGCTGATGTAGATTTATGTGTGGGCACTTTGAGTAAGGCAGCAGGGTGTCATGGCGGTTTCATAGCTTGCAGCAAAAAATGGAAGCAACTGATACAGTCGAGAGGTCGTTCATTCATATTTTCAACAGCAATCCCTGTCCCAATGGCTGCAGCTGCTTATGCAGCAGTTGTAGTGGCGAGGAAGGAGATATGGAGAAGAAAGGCAATATGGGAGAGGGTAAAAGAGTTCAAGGAATTATCTGGAGTTGACATCTCAAGCCCCATTATCTCACTTGTTGTAGGGAATCAAGAGAAAGCCCTCAAAGCGAGCCGGTATCTATTAAAATCAGGCTTCCATGTAATGGCAATACGACCGCCCACAGTGCCACCCAATTCTTGCAGGCTAAGGGTGACACTGAGTGCAGCACATACCACAGAAGATGTGAAGAAACTCATCACTGCGCTTTCTTCTTGTTTGGACTTTGACAACACAGCCACTCACATTCCTTCCTTTCTATTTCCCAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0006768 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009102 GO:0009108 GO:0009110 GO:0009987 GO:0016053 GO:0017144 GO:0018130 GO:0019752 GO:0032787 GO:0034641 GO:0042364 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

343

Amino Acids

37.31

Weight (kDa)

9.0

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	103 - 455	2.3e-47	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04620 AT5G04620 AT5G04620
fragaria_vesca	FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000
malus_domestica	MD15G1302100.v1.1
prunus_persica	Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.5G016200_v2.0.a1
pyrus_communis	pycom15g26500
rosa_chinensis	RchiOBHm_Chr1g0348931 RchiOBHm_Chr1g0348961
rosa_laevigata	RLG00000028615
rosa_multiflora	Rmu_sc0000106.1_g000011 Rmu_sc0000259.1_g000007 Rmu_sc0004199.1_g000013 Rmu_sc0005954.1_g000031 Rmu_sc0021541.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306270 Rroxscaffold_4G00306440
rosa_rugosa	Rorug01G0198700
rosa_samantha	Rh1AG216300 Rh1BG182200 Rh1CG106500 Rh1CG200500 Rh1DG115400 Rh1DG212200 Rh1DG212300 Rh6AG012000 Rh6BG000100 Rh6BG010800
rosa_wichuraiana	Rw1G018310 Rw1G018340 Rw1G018410 Rw2G027810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1030
AccB7I	CCANNNNNTGG	1 cut(s)	862
AciI	CCGC	4 cut(s)	171, 177, 576, 875
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	2 cut(s)	98, 209
AdeI	CACNNNGTG	1 cut(s)	920
AfiI	CCNNNNNNNGG	2 cut(s)	177, 862
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	3 cut(s)	281, 645, 751
AluBI	AGCT	6 cut(s)	372, 412, 421, 524, 587, 674
AluI	AGCT	6 cut(s)	372, 412, 421, 524, 587, 674
Alw21I	GWGCWC	1 cut(s)	414
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	9 cut(s)	119, 131, 560, 591, 668, 671, 674, 683, 923
ApoI	RAATTY	1 cut(s)	509
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
AspLEI	GCGC	3 cut(s)	73, 223, 964
AspS9I	GGNCC	1 cut(s)	5
AsuHPI	GGTGA	4 cut(s)	305, 373, 401, 922
AsuNHI	GCTAGC	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	5
AxyI	CCTNAGG	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	414
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	9 cut(s)	106, 118, 572, 603, 655, 661, 683, 695, 935
BccI	CCATC	2 cut(s)	215, 239
BfaI	CTAG	3 cut(s)	63, 174, 446
BfmI	CTRYAG	1 cut(s)	669
BglI	GCCNNNNNGGC	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	3 cut(s)	208, 242, 448
BmtI	GCTAGC	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	783
Bpu10I	CCTNAGC	2 cut(s)	504, 905
BpuEI	CTTGAG	2 cut(s)	77, 760
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 862
Bse118I	RCCGGY	1 cut(s)	831
Bse1I	ACTGG	1 cut(s)	115
Bse21I	CCTNAGG	1 cut(s)	9
Bse3DI	GCAATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	177, 862
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	3 cut(s)	431, 495, 908
BseNI	ACTGG	1 cut(s)	115
BseSI	GKGCMC	1 cut(s)	548
BseXI	GCAGC	9 cut(s)	106, 118, 572, 603, 655, 661, 683, 695, 935
BsgI	GTGCAG	1 cut(s)	942
Bsh1285I	CGRYCG	1 cut(s)	875
BshFI	GGCC	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	875
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	832
BslFI	GGGAC	2 cut(s)	18, 644
BslI	CCNNNNNNNGG	2 cut(s)	177, 862
BsmFI	GGGAC	2 cut(s)	18, 644
BsnI	GGCC	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	414, 548
BspACI	CCGC	4 cut(s)	171, 177, 576, 875
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	3 cut(s)	430, 496, 909
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	673
BspOI	GCTAGC	1 cut(s)	177
BspQI	GCTCTTC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	831
BsrI	ACTGG	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	831
Bst4CI	ACNGT	6 cut(s)	302, 389, 491, 518, 618, 883
Bst6I	CTCTTC	2 cut(s)	341, 402
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstC8I	GCNNGC	4 cut(s)	175, 589, 829, 902
BstDEI	CTNAG	5 cut(s)	9, 417, 504, 905, 917
BstHHI	GCGC	3 cut(s)	73, 223, 964
BstMCI	CGRYCG	1 cut(s)	875
BstMWI	GCNNNNNNNGC	8 cut(s)	128, 140, 418, 674, 680, 683, 824, 883
BstNSI	RCATGY	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	669
BstSLI	GKGCMC	1 cut(s)	548
BstV1I	GCAGC	9 cut(s)	106, 118, 572, 603, 655, 661, 683, 695, 935
Bsu36I	CCTNAGG	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	170
BtsI	GCAGTG	1 cut(s)	957
BtsIMutI	CAGTG	4 cut(s)	298, 888, 914, 957
Cac8I	GCNNGC	4 cut(s)	175, 589, 829, 902
CfoI	GCGC	3 cut(s)	73, 223, 964
Cfr10I	RCCGGY	1 cut(s)	831
Cfr13I	GGNCC	1 cut(s)	5
CviAII	CATG	5 cut(s)	230, 307, 464, 572, 857
DdeI	CTNAG	5 cut(s)	9, 417, 504, 905, 917
DraIII	CACNNNGTG	1 cut(s)	920
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	2 cut(s)	341, 402
EarI	CTCTTC	2 cut(s)	341, 402
Ecl136II	GAGCTC	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	5
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	2 cut(s)	98, 209
Eco81I	CCTNAGG	1 cut(s)	9
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	414
FaeI	CATG	5 cut(s)	233, 310, 467, 575, 860
FalI	AAGNNNNNCTT	4 cut(s)	142, 174, 422, 454
FaqI	GGGAC	2 cut(s)	18, 644
FatI	CATG	5 cut(s)	229, 306, 463, 571, 856
FauI	CCCGC	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	414
FspBI	CTAG	3 cut(s)	63, 174, 446
GlaI	GCGC	3 cut(s)	72, 222, 963
GsuI	CTGGAG	1 cut(s)	783
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	832
HhaI	GCGC	3 cut(s)	73, 223, 964
Hin1II	CATG	5 cut(s)	233, 310, 467, 575, 860
Hin6I	GCGC	3 cut(s)	71, 221, 962
HinP1I	GCGC	3 cut(s)	71, 221, 962
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HinfI	GANTC	3 cut(s)	59, 226, 805
HpaII	CCGG	1 cut(s)	832
HphI	GGTGA	4 cut(s)	305, 373, 401, 922
Hpy166II	GTNNAC	1 cut(s)	769
Hpy188I	TCNGA	3 cut(s)	189, 217, 426
Hpy188III	TCNNGA	3 cut(s)	621, 762, 809
Hpy8I	GTNNAC	1 cut(s)	769
HpyAV	CCTTC	4 cut(s)	346, 452, 697, 1017
HpyCH4III	ACNGT	6 cut(s)	302, 389, 491, 518, 618, 883
HpyF10VI	GCNNNNNNNGC	8 cut(s)	128, 140, 418, 674, 680, 683, 824, 883
HpyF3I	CTNAG	5 cut(s)	9, 417, 504, 905, 917
Hsp92II	CATG	5 cut(s)	233, 310, 467, 575, 860
HspAI	GCGC	3 cut(s)	71, 221, 962
LguI	GCTCTTC	1 cut(s)	402
LpnPI	CCDG	7 cut(s)	96, 549, 669, 747, 834, 845, 886
Lsp1109I	GCAGC	9 cut(s)	106, 118, 572, 603, 655, 661, 683, 695, 935
LweI	GCATC	3 cut(s)	208, 242, 448
MaeI	CTAG	3 cut(s)	63, 174, 446
MaeIII	GTNAC	4 cut(s)	302, 361, 389, 910
MboII	GAAGA	9 cut(s)	91, 202, 358, 419, 439, 729, 950, 958, 960
MfeI	CAATTG	1 cut(s)	144
MhlI	GDGCHC	2 cut(s)	414, 548
MluCI	AATT	8 cut(s)	144, 237, 319, 334, 509, 755, 892, 1025
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	8 cut(s)	82, 195, 342, 499, 617, 693, 729, 830
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	4 cut(s)	23, 318, 513, 842
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	1 cut(s)	832
MunI	CAATTG	1 cut(s)	144
MwoI	GCNNNNNNNGC	8 cut(s)	128, 140, 418, 674, 680, 683, 824, 883
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	5 cut(s)	233, 310, 467, 575, 860
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	4 cut(s)	302, 361, 389, 910
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	310
PciI	ACATGT	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	226, 805
PflMI	CCANNNNNTGG	1 cut(s)	862
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	5
PscI	ACATGT	1 cut(s)	306
PsiI	TTATAA	1 cut(s)	1030
Psp124BI	GAGCTC	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PstI	CTGCAG	1 cut(s)	673
PvuII	CAGCTG	1 cut(s)	674
SacI	GAGCTC	1 cut(s)	414
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	4 cut(s)	23, 318, 513, 842
Sau96I	GGNCC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	68
SduI	GDGCHC	2 cut(s)	414, 548
SfaNI	GCATC	3 cut(s)	208, 242, 448
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	2 cut(s)	56, 775
SmoI	CTYRAG	2 cut(s)	56, 775
Sse9I	AATT	8 cut(s)	144, 237, 319, 334, 509, 755, 892, 1025
SsiI	CCGC	4 cut(s)	171, 177, 576, 875
SspMI	CTAG	3 cut(s)	63, 174, 446
SstI	GAGCTC	1 cut(s)	414
TaaI	ACNGT	6 cut(s)	302, 389, 491, 518, 618, 883
TaqI	TCGA	2 cut(s)	295, 620
TasI	AATT	8 cut(s)	144, 237, 319, 334, 509, 755, 892, 1025
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	226, 805
Tru1I	TTAA	4 cut(s)	23, 318, 513, 842
Tru9I	TTAA	4 cut(s)	23, 318, 513, 842
TscAI	CASTG	4 cut(s)	305, 888, 921, 964
TseFI	GTSAC	4 cut(s)	302, 361, 389, 910
TseI	GCWGC	9 cut(s)	119, 131, 560, 591, 668, 671, 674, 683, 923
Tsp45I	GTSAC	4 cut(s)	302, 361, 389, 910
TspDTI	ATGAA	5 cut(s)	210, 359, 571, 621, 625
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	4 cut(s)	305, 888, 921, 964
Van91I	CCANNNNNTGG	1 cut(s)	862
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	509
XceI	RCATGY	1 cut(s)	310
XspI	CTAG	3 cut(s)	63, 174, 446
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.