Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021541.1

Orthogroup ID

OG0001812

Physical Location & Seq

Genomic Coordinates Reverse (-)

17457 .. 18643

Gene Structure 1187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021541.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgggctcctgggaaaactgggtcgaacactcccttgacaaacttgaacgcctgcaactcctccggtctctccgacccatctacttccgcaatgaacctcaaaaacccaccaccaccatcgaagatgacgacctccaagtcttccaccaaatgcagctctgggaccgttcctccgtggaggtccacattcccgaatcaacgttccagaaatggctcagtgacatccccagttccggagatgaggaagatacccggagattcagaaagctgttgttgttctctggaaatgattatctgggcttgagttcacatcccaccattggaaatgctgctgctaaggcggctcaagaacatggaatgggcccaaggggctctgctttgatctgtggatatacagattaccataggcgactggagtcatccttagcggacttgaagaagaaagaggattgccttctttgtcctacagggtttgcagccaatatggccttgatggtagtgttgggaaatgttggctctctcttggctgctggaaaaacacctttaactaatgaaaagattgccattttttctgatgaactgaaccatgcgtccataattgatggtatgtatatgtcctatatcatgcttttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

211

Amino Acids

23.76

Weight (kDa)

5.48

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04620 AT5G04620 AT5G04620
fragaria_vesca	FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000
malus_domestica	MD15G1302100.v1.1
prunus_persica	Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.5G016200_v2.0.a1
pyrus_communis	pycom15g26500
rosa_chinensis	RchiOBHm_Chr1g0348931 RchiOBHm_Chr1g0348961
rosa_laevigata	RLG00000028615
rosa_multiflora	Rmu_sc0000106.1_g000011 Rmu_sc0000259.1_g000007 Rmu_sc0004199.1_g000013 Rmu_sc0005954.1_g000031 Rmu_sc0021541.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306270 Rroxscaffold_4G00306440
rosa_rugosa	Rorug01G0198700
rosa_samantha	Rh1AG216300 Rh1BG182200 Rh1CG106500 Rh1CG200500 Rh1DG115400 Rh1DG212200 Rh1DG212300 Rh6AG012000 Rh6BG000100 Rh6BG010800
rosa_wichuraiana	Rw1G018310 Rw1G018340 Rw1G018410 Rw2G027810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	3 cut(s)	88, 341, 428
AclI	AACGTT	1 cut(s)	200
AfiI	CCNNNNNNNGG	2 cut(s)	233, 320
AgsI	TTSAA	2 cut(s)	47, 436
AjnI	CCWGG	1 cut(s)	8
AloI	GAACNNNNNNTCC	2 cut(s)	575, 607
AluBI	AGCT	2 cut(s)	157, 268
AluI	AGCT	2 cut(s)	157, 268
Alw26I	GTCTC	1 cut(s)	72
Aor13HI	TCCGGA	1 cut(s)	233
AoxI	GGCC	2 cut(s)	361, 486
ApaI	GGGCCC	1 cut(s)	365
ApeKI	GCWGC	5 cut(s)	154, 329, 332, 476, 527
AspS9I	GGNCC	4 cut(s)	163, 181, 361, 362
AsuC2I	CCSGG	1 cut(s)	253
AvaII	GGWCC	2 cut(s)	163, 181
BaeGI	GKGCMC	1 cut(s)	365
BanII	GRGCYC	3 cut(s)	8, 365, 374
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	5 cut(s)	166, 316, 319, 488, 514
BccI	CCATC	4 cut(s)	86, 125, 487, 596
BciT130I	CCWGG	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	465
BglI	GCCNNNNNGGC	2 cut(s)	369, 485
BisI	GCNGC	6 cut(s)	155, 330, 333, 342, 477, 528
BlsI	GCNGC	6 cut(s)	156, 331, 334, 343, 478, 529
Bme1390I	CCNGG	2 cut(s)	10, 253
Bme18I	GGWCC	2 cut(s)	163, 181
BmgT120I	GGNCC	4 cut(s)	163, 181, 361, 362
BmiI	GGNNCC	3 cut(s)	7, 164, 363
BmrFI	CCNGG	2 cut(s)	10, 253
BmrI	ACTGGG	2 cut(s)	28, 222
BmuI	ACTGGG	2 cut(s)	28, 222
BoxI	GACNNNNGTC	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	434
Bpu10I	CCTNAGC	2 cut(s)	336, 424
BpuEI	CTTGAG	2 cut(s)	322, 330
BpuMI	CCSGG	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	3 cut(s)	9, 174, 365
BsaWI	WCCGGW	2 cut(s)	63, 233
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 320
Bse1I	ACTGG	3 cut(s)	23, 228, 417
Bse3DI	GCAATG	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	3 cut(s)	9, 174, 365
BseGI	GGATG	3 cut(s)	222, 310, 419
BseLI	CCNNNNNNNGG	2 cut(s)	233, 320
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	3 cut(s)	23, 228, 417
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	365
BseXI	GCAGC	5 cut(s)	166, 316, 319, 488, 514
BshFI	GGCC	2 cut(s)	363, 488
BsiSI	CCGG	3 cut(s)	64, 234, 253
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	233, 320
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	363, 488
Bso31I	GGTCTC	1 cut(s)	72
Bsp120I	GGGCCC	1 cut(s)	361
Bsp1286I	GDGCHC	3 cut(s)	8, 365, 374
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	3 cut(s)	88, 341, 428
BspANI	GGCC	2 cut(s)	363, 488
BspCNI	CTCAG	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	233
BspLI	GGNNCC	3 cut(s)	7, 164, 363
BspTNI	GGTCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	97
BsrI	ACTGG	3 cut(s)	23, 228, 417
BssECI	CCNNGG	3 cut(s)	9, 174, 365
BssMI	GATC	1 cut(s)	381
BssT1I	CCWWGG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	3 cut(s)	215, 336, 424
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	222, 310, 419
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	4 cut(s)	338, 341, 369, 485
BstNI	CCWGG	1 cut(s)	10
BstPAI	GACNNNNGTC	1 cut(s)	415
BstSCI	CCNGG	2 cut(s)	8, 251
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	5 cut(s)	166, 316, 319, 488, 514
BstV2I	GAAGAC	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	363, 488
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	222, 310, 419
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	53
Cfr13I	GGNCC	4 cut(s)	163, 181, 361, 362
CseI	GACGC	1 cut(s)	579
CviAII	CATG	3 cut(s)	353, 587, 625
DdeI	CTNAG	3 cut(s)	215, 336, 424
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	365
Eco24I	GRGCYC	3 cut(s)	8, 365, 374
Eco31I	GGTCTC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	163, 181
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	365
EcoT38I	GRGCYC	3 cut(s)	8, 365, 374
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	3 cut(s)	356, 590, 628
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	3 cut(s)	352, 586, 624
Fnu4HI	GCNGC	6 cut(s)	155, 330, 333, 342, 477, 528
FokI	GGATG	3 cut(s)	209, 297, 406
FriOI	GRGCYC	3 cut(s)	8, 365, 374
Fsp4HI	GCNGC	6 cut(s)	155, 330, 333, 342, 477, 528
GluI	GCNGC	6 cut(s)	155, 330, 333, 342, 477, 528
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	363, 488
HapII	CCGG	3 cut(s)	64, 234, 253
HgaI	GACGC	1 cut(s)	579
Hin1II	CATG	3 cut(s)	356, 590, 628
HinfI	GANTC	3 cut(s)	194, 258, 416
HpaII	CCGG	3 cut(s)	64, 234, 253
Hpy166II	GTNNAC	2 cut(s)	184, 308
Hpy188I	TCNGA	3 cut(s)	74, 263, 574
Hpy188III	TCNNGA	5 cut(s)	191, 205, 234, 282, 347
Hpy8I	GTNNAC	2 cut(s)	184, 308
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	3 cut(s)	55, 154, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	338, 341, 369, 485
HpyF3I	CTNAG	3 cut(s)	215, 336, 424
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	3 cut(s)	356, 590, 628
Kpn2I	TCCGGA	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	381
LmnI	GCTCC	1 cut(s)	11
Lsp1109I	GCAGC	5 cut(s)	166, 316, 319, 488, 514
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	5 cut(s)	133, 134, 257, 448, 451
MhlI	GDGCHC	3 cut(s)	8, 365, 374
MluCI	AATT	1 cut(s)	597
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	7 cut(s)	71, 108, 143, 172, 181, 235, 439
MroI	TCCGGA	1 cut(s)	233
MseI	TTAA	1 cut(s)	545
MspI	CCGG	3 cut(s)	64, 234, 253
MspR9I	CCNGG	2 cut(s)	10, 253
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	4 cut(s)	338, 341, 369, 485
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	3 cut(s)	356, 590, 628
NlaIV	GGNNCC	3 cut(s)	7, 164, 363
NmuCI	GTSAC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	194, 258
PkrI	GCNGC	6 cut(s)	156, 331, 334, 343, 478, 529
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PshAI	GACNNNNGTC	1 cut(s)	415
Psp1406I	AACGTT	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	3 cut(s)	7, 164, 363
PspOMI	GGGCCC	1 cut(s)	361
PspPI	GGNCC	4 cut(s)	163, 181, 361, 362
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	6 cut(s)	155, 330, 333, 342, 477, 528
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	4 cut(s)	163, 181, 361, 362
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	2 cut(s)	10, 253
SduI	GDGCHC	3 cut(s)	8, 365, 374
SetI	ASST	7 cut(s)	100, 135, 159, 183, 203, 270, 544
SfcI	CTRYAG	1 cut(s)	465
SinI	GGWCC	2 cut(s)	163, 181
SmlI	CTYRAG	2 cut(s)	301, 345
SmoI	CTYRAG	2 cut(s)	301, 345
Sse9I	AATT	1 cut(s)	597
SsiI	CCGC	3 cut(s)	88, 341, 428
StyD4I	CCNGG	2 cut(s)	8, 251
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	2 cut(s)	24, 120
TasI	AATT	1 cut(s)	597
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	194, 258
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	5 cut(s)	154, 329, 332, 476, 527
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	108, 567, 591
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	2 cut(s)	163, 181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.