Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005954.1

Orthogroup ID

OG0001812

Physical Location & Seq

Genomic Coordinates Reverse (-)

122506 .. 123542

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005954.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atgcagctcttggaccgttcctccgtggaggtccacattcccgaatcaatgttccagaaatggctcagtgacatccccagttccggagatgaggaagatacccggagattcagaaagctgttgttgttctctggaaatgattatctgggcttgagttcacatcccaccattggaaatgctgctgccaaggcggctcaagaacatggaatgggcccaaggggctctgctttgatctgtggatatacagattaccataggcgactggagtcatccttagcggacttgaagaagaaagaggattgccttctttgtcctacagggtttgcagccaatatggccttgatggtagtgttgggaaatgttggctctctcttggctgctggaaaaacacctttaactaatgaaaagattgccattttttctgatgaactgaaccatgcgtccataattgatggtatgtatatgtcctatatcatgcttttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

161

Amino Acids

17.62

Weight (kDa)

5.68

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04620 AT5G04620 AT5G04620
fragaria_vesca	FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000
malus_domestica	MD15G1302100.v1.1
prunus_persica	Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.5G016200_v2.0.a1
pyrus_communis	pycom15g26500
rosa_chinensis	RchiOBHm_Chr1g0348931 RchiOBHm_Chr1g0348961
rosa_laevigata	RLG00000028615
rosa_multiflora	Rmu_sc0000106.1_g000011 Rmu_sc0000259.1_g000007 Rmu_sc0004199.1_g000013 Rmu_sc0005954.1_g000031 Rmu_sc0021541.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306270 Rroxscaffold_4G00306440
rosa_rugosa	Rorug01G0198700
rosa_samantha	Rh1AG216300 Rh1BG182200 Rh1CG106500 Rh1CG200500 Rh1DG115400 Rh1DG212200 Rh1DG212300 Rh6AG012000 Rh6BG000100 Rh6BG010800
rosa_wichuraiana	Rw1G018310 Rw1G018340 Rw1G018410 Rw2G027810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	2 cut(s)	191, 278
AfiI	CCNNNNNNNGG	2 cut(s)	83, 170
AgsI	TTSAA	1 cut(s)	286
AloI	GAACNNNNNNTCC	2 cut(s)	425, 457
AluBI	AGCT	2 cut(s)	7, 118
AluI	AGCT	2 cut(s)	7, 118
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	2 cut(s)	211, 336
ApaI	GGGCCC	1 cut(s)	215
ApeKI	GCWGC	5 cut(s)	4, 179, 182, 326, 377
AspS9I	GGNCC	4 cut(s)	13, 31, 211, 212
AsuC2I	CCSGG	1 cut(s)	103
AvaII	GGWCC	2 cut(s)	13, 31
BaeGI	GKGCMC	1 cut(s)	215
BanII	GRGCYC	2 cut(s)	215, 224
BbvI	GCAGC	5 cut(s)	16, 166, 169, 338, 364
BccI	CCATC	2 cut(s)	337, 446
BcnI	CCSGG	1 cut(s)	103
BfmI	CTRYAG	1 cut(s)	315
BglI	GCCNNNNNGGC	3 cut(s)	191, 219, 335
BisI	GCNGC	6 cut(s)	5, 180, 183, 192, 327, 378
BlsI	GCNGC	6 cut(s)	6, 181, 184, 193, 328, 379
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	2 cut(s)	13, 31
BmgT120I	GGNCC	4 cut(s)	13, 31, 211, 212
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	103
BmrI	ACTGGG	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	72
BoxI	GACNNNNGTC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	274
BpuEI	CTTGAG	2 cut(s)	172, 180
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	3 cut(s)	24, 186, 215
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 170
Bse1I	ACTGG	2 cut(s)	78, 267
BseAI	TCCGGA	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	24, 186, 215
BseGI	GGATG	3 cut(s)	72, 160, 269
BseLI	CCNNNNNNNGG	2 cut(s)	83, 170
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	2 cut(s)	78, 267
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	5 cut(s)	16, 166, 169, 338, 364
BshFI	GGCC	2 cut(s)	213, 338
BsiSI	CCGG	2 cut(s)	84, 103
BslI	CCNNNNNNNGG	2 cut(s)	83, 170
BsnI	GGCC	2 cut(s)	213, 338
Bsp120I	GGGCCC	1 cut(s)	211
Bsp1286I	GDGCHC	2 cut(s)	215, 224
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	2 cut(s)	191, 278
BspANI	GGCC	2 cut(s)	213, 338
BspCNI	CTCAG	1 cut(s)	78
BspEI	TCCGGA	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	78, 267
BssECI	CCNNGG	3 cut(s)	24, 186, 215
BssMI	GATC	1 cut(s)	231
BssT1I	CCWWGG	2 cut(s)	186, 215
Bst4CI	ACNGT	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	65, 274
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	3 cut(s)	72, 160, 269
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 191, 219, 335
BstPAI	GACNNNNGTC	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	5 cut(s)	16, 166, 169, 338, 364
BsuRI	GGCC	2 cut(s)	213, 338
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	3 cut(s)	72, 160, 269
BtsIMutI	CAGTG	1 cut(s)	73
Cfr13I	GGNCC	4 cut(s)	13, 31, 211, 212
CseI	GACGC	1 cut(s)	429
CviAII	CATG	3 cut(s)	203, 437, 475
DdeI	CTNAG	2 cut(s)	65, 274
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Eco130I	CCWWGG	2 cut(s)	186, 215
Eco24I	GRGCYC	2 cut(s)	215, 224
Eco47I	GGWCC	2 cut(s)	13, 31
EcoT14I	CCWWGG	2 cut(s)	186, 215
EcoT38I	GRGCYC	2 cut(s)	215, 224
ErhI	CCWWGG	2 cut(s)	186, 215
FaeI	CATG	3 cut(s)	206, 440, 478
FatI	CATG	3 cut(s)	202, 436, 474
Fnu4HI	GCNGC	6 cut(s)	5, 180, 183, 192, 327, 378
FokI	GGATG	3 cut(s)	59, 147, 256
FriOI	GRGCYC	2 cut(s)	215, 224
Fsp4HI	GCNGC	6 cut(s)	5, 180, 183, 192, 327, 378
GluI	GCNGC	6 cut(s)	5, 180, 183, 192, 327, 378
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	213, 338
HapII	CCGG	2 cut(s)	84, 103
HgaI	GACGC	1 cut(s)	429
Hin1II	CATG	3 cut(s)	206, 440, 478
HinfI	GANTC	3 cut(s)	44, 108, 266
HpaII	CCGG	2 cut(s)	84, 103
Hpy166II	GTNNAC	2 cut(s)	34, 158
Hpy188I	TCNGA	2 cut(s)	113, 424
Hpy188III	TCNNGA	5 cut(s)	41, 55, 84, 132, 197
Hpy8I	GTNNAC	2 cut(s)	34, 158
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	4, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 191, 219, 335
HpyF3I	CTNAG	2 cut(s)	65, 274
Hsp92II	CATG	3 cut(s)	206, 440, 478
Kpn2I	TCCGGA	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	231
LpnPI	CCDG	9 cut(s)	68, 91, 97, 116, 117, 131, 248, 303, 366
Lsp1109I	GCAGC	5 cut(s)	16, 166, 169, 338, 364
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	3 cut(s)	107, 298, 301
MhlI	GDGCHC	2 cut(s)	215, 224
MluCI	AATT	1 cut(s)	447
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	4 cut(s)	22, 31, 85, 289
MroI	TCCGGA	1 cut(s)	83
MseI	TTAA	1 cut(s)	395
MspI	CCGG	2 cut(s)	84, 103
MspR9I	CCNGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	4 cut(s)	188, 191, 219, 335
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	3 cut(s)	206, 440, 478
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	44, 108
PkrI	GCNGC	6 cut(s)	6, 181, 184, 193, 328, 379
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PshAI	GACNNNNGTC	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	213
PspOMI	GGGCCC	1 cut(s)	211
PspPI	GGNCC	4 cut(s)	13, 31, 211, 212
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	6 cut(s)	5, 180, 183, 192, 327, 378
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	4 cut(s)	13, 31, 211, 212
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	2 cut(s)	215, 224
SetI	ASST	4 cut(s)	9, 33, 120, 394
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	2 cut(s)	13, 31
SmlI	CTYRAG	2 cut(s)	151, 195
SmoI	CTYRAG	2 cut(s)	151, 195
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	2 cut(s)	191, 278
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	2 cut(s)	186, 215
TaaI	ACNGT	1 cut(s)	17
TasI	AATT	1 cut(s)	447
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	2 cut(s)	44, 108
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	5 cut(s)	4, 179, 182, 326, 377
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	2 cut(s)	417, 441
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	13, 31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.