Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001812

Physical Location & Seq

Genomic Coordinates Forward (+)

27825842 .. 27826117

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0198700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGTGGCCATGGACATCATCTCGAGGGAGGCGATTCACGGCGTGAGGTGGGTTTCGGCGGCGGGGATGGCTACTTCGGGGGGAGCTGGTAGCGGCTTGAGACGGCGATCCAAGTTTGGCTGGCTTGCTCAGGCTTCATCAGTGCTTTCTGGTGATCGTTCCTTCAGGCGTCGTGGCTCTGGCTTGCTTGCGGCGGCGAGTTTTGGTGTGTACAGCGGTGCTGCACAGGGAAGAGATGCTTGGAATGGGCTGGGCCACGGGTGGACCTTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00780 ko01100 map00780 map01100

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

91

Amino Acids

9.41

Weight (kDa)

11.83

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04620 AT5G04620 AT5G04620
fragaria_vesca	FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000 FvH4_7g11000
malus_domestica	MD15G1302100.v1.1
prunus_persica	Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.2G274800_v2.0.a1 Prupe.5G016200_v2.0.a1
pyrus_communis	pycom15g26500
rosa_chinensis	RchiOBHm_Chr1g0348931 RchiOBHm_Chr1g0348961
rosa_laevigata	RLG00000028615
rosa_multiflora	Rmu_sc0000106.1_g000011 Rmu_sc0000259.1_g000007 Rmu_sc0004199.1_g000013 Rmu_sc0005954.1_g000031 Rmu_sc0021541.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306270 Rroxscaffold_4G00306440
rosa_rugosa	Rorug01G0198700
rosa_samantha	Rh1AG216300 Rh1BG182200 Rh1CG106500 Rh1CG200500 Rh1DG115400 Rh1DG212200 Rh1DG212300 Rh6AG012000 Rh6BG000100 Rh6BG010800
rosa_wichuraiana	Rw1G018310 Rw1G018340 Rw1G018410 Rw2G027810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	59, 62, 93, 191, 194, 216
AclWI	GGATC	1 cut(s)	102
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	169
AdeI	CACNNNGTG	1 cut(s)	43
AfaI	GTAC	1 cut(s)	212
AjuI	GAANNNNNNNTTGG	2 cut(s)	223, 255
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	2 cut(s)	6, 253
ApeKI	GCWGC	1 cut(s)	221
AspS9I	GGNCC	2 cut(s)	253, 264
AsuHPI	GGTGA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	2 cut(s)	55, 119
BcoDI	GTCTC	1 cut(s)	94
BisI	GCNGC	5 cut(s)	60, 94, 192, 195, 222
BlsI	GCNGC	5 cut(s)	61, 95, 193, 196, 223
Bme18I	GGWCC	1 cut(s)	264
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	253, 264
BmsI	GCATC	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	169
BsaJI	CCNNGG	3 cut(s)	9, 256, 267
BseDI	CCNNGG	3 cut(s)	9, 256, 267
BseGI	GGATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	208
BseYI	CCCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	8, 255
BsiHKCI	CYCGRG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	8, 255
BsoBI	CYCGRG	1 cut(s)	22
Bsp1407I	TGTACA	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	107, 154
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	6 cut(s)	59, 62, 93, 191, 194, 216
BspANI	GGCC	2 cut(s)	8, 255
BspCNI	CTCAG	1 cut(s)	142
BspPI	GGATC	1 cut(s)	102
BsrGI	TGTACA	1 cut(s)	210
BssECI	CCNNGG	3 cut(s)	9, 256, 267
BssMI	GATC	2 cut(s)	107, 154
BssNI	GRCGYC	1 cut(s)	169
BssT1I	CCWWGG	2 cut(s)	9, 267
Bst6I	CTCTTC	1 cut(s)	226
BstACI	GRCGYC	1 cut(s)	169
BstAUI	TGTACA	1 cut(s)	210
BstC8I	GCNNGC	4 cut(s)	122, 126, 185, 189
BstDEI	CTNAG	1 cut(s)	129
BstDSI	CCRYGG	2 cut(s)	9, 256
BstF5I	GGATG	1 cut(s)	72
BstKTI	GATC	2 cut(s)	110, 157
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	2 cut(s)	107, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	8, 255
BtgI	CCRYGG	2 cut(s)	9, 256
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	4 cut(s)	122, 126, 185, 189
Cfr13I	GGNCC	2 cut(s)	253, 264
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	1 cut(s)	10
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	2 cut(s)	109, 156
DpnII	GATC	2 cut(s)	107, 154
DraIII	CACNNNGTG	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco130I	CCWWGG	2 cut(s)	9, 267
Eco47I	GGWCC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	9, 267
ErhI	CCWWGG	2 cut(s)	9, 267
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	1 cut(s)	13
FaiI	YATR	1 cut(s)	11
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FatI	CATG	1 cut(s)	9
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	5 cut(s)	60, 94, 192, 195, 222
FokI	GGATG	1 cut(s)	79
Fsp4HI	GCNGC	5 cut(s)	60, 94, 192, 195, 222
GluI	GCNGC	5 cut(s)	60, 94, 192, 195, 222
GsaI	CCCAGC	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	8, 255
HgaI	GACGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	13
HinfI	GANTC	1 cut(s)	34
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	211, 264
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	2 cut(s)	211, 264
Hpy99I	CGWCG	1 cut(s)	174
HpyAV	CCTTC	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	107, 154
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	8 cut(s)	72, 106, 116, 135, 151, 165, 212, 236
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	226
MalI	GATC	2 cut(s)	109, 156
MboI	GATC	2 cut(s)	107, 154
MboII	GAAGA	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	8
MluNI	TGGCCA	1 cut(s)	8
MnlI	CCTC	3 cut(s)	18, 22, 39
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	107, 154
NlaIII	CATG	1 cut(s)	13
PaeR7I	CTCGAG	1 cut(s)	22
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	5 cut(s)	61, 95, 193, 196, 223
PspFI	CCCAGC	1 cut(s)	250
PspPI	GGNCC	2 cut(s)	253, 264
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SatI	GCNGC	5 cut(s)	60, 94, 192, 195, 222
Sau3AI	GATC	2 cut(s)	107, 154
Sau96I	GGNCC	2 cut(s)	253, 264
SetI	ASST	3 cut(s)	50, 88, 269
SfaNI	GCATC	1 cut(s)	226
Sfr274I	CTCGAG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	264
SlaI	CTCGAG	1 cut(s)	22
SmlI	CTYRAG	2 cut(s)	22, 97
SmoI	CTYRAG	2 cut(s)	22, 97
SsiI	CCGC	6 cut(s)	59, 62, 93, 191, 194, 216
StyI	CCWWGG	2 cut(s)	9, 267
TaqI	TCGA	1 cut(s)	23
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	4 cut(s)	62, 96, 194, 197
TfiI	GAWTC	1 cut(s)	34
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	264
XhoI	CTCGAG	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.